Wall clock time and date at job start Tue Mar 31 2020 17:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 O 1.42903 * 109.46908 * 119.99930 * 2 1 3 5 5 C 1.35727 * 116.99709 * 85.30170 * 4 2 1 6 6 C 1.39222 * 120.38374 * 354.63460 * 5 4 2 7 7 C 1.38328 * 118.44645 * 180.02562 * 6 5 4 8 8 C 1.39466 * 119.12816 * 359.97368 * 7 6 5 9 9 C 1.47933 * 119.65145 * 180.02562 * 8 7 6 10 10 O 1.21541 * 120.00469 * 0.02563 * 9 8 7 11 11 N 1.34782 * 119.99480 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.64802 * 359.69500 * 11 9 8 13 13 C 1.55135 * 104.72073 * 155.81410 * 12 11 9 14 14 C 1.55163 * 101.48326 * 37.29466 * 13 12 11 15 15 H 1.08999 * 110.72030 * 205.96451 * 14 13 12 16 16 N 1.46503 * 110.71774 * 82.69622 * 14 13 12 17 17 C 1.36937 * 119.99995 * 91.47647 * 16 14 13 18 18 H 1.07998 * 120.00047 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99970 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47044 * 90.00186 * 21 19 17 23 23 H 1.48499 * 109.47193 * 209.99629 * 21 19 17 24 24 H 1.48491 * 109.47264 * 330.00203 * 21 19 17 25 25 C 1.47026 * 125.64387 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88107 * 300.44308 * 25 11 9 27 27 C 1.53003 * 109.88080 * 61.60864 * 25 11 9 28 28 N 1.32789 * 120.68863 * 0.02562 * 8 7 6 29 29 C 1.31377 * 121.69496 * 359.97438 * 28 8 7 30 30 H 1.09005 * 109.47377 * 60.00009 * 1 2 3 31 31 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47430 * 299.99917 * 1 2 3 33 33 H 1.08999 * 109.47009 * 239.99870 * 2 1 3 34 34 H 1.08998 * 109.47440 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47499 * 300.00096 * 3 2 1 36 36 H 1.08999 * 109.47125 * 59.99941 * 3 2 1 37 37 H 1.08002 * 120.77804 * 359.74527 * 6 5 4 38 38 H 1.08003 * 120.43348 * 179.97438 * 7 6 5 39 39 H 1.08998 * 110.37064 * 274.74428 * 12 11 9 40 40 H 1.08999 * 110.36954 * 37.07497 * 12 11 9 41 41 H 1.08998 * 111.19525 * 279.19108 * 13 12 11 42 42 H 1.08995 * 110.93990 * 155.28835 * 13 12 11 43 43 H 0.96992 * 119.99947 * 271.47798 * 16 14 13 44 44 H 0.97000 * 120.00268 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.47223 * 58.54473 * 27 25 11 46 46 H 1.08998 * 109.46512 * 178.54320 * 27 25 11 47 47 H 1.08992 * 109.46988 * 298.54339 * 27 25 11 48 48 H 1.07998 * 119.59812 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1182 -2.0244 1.0958 6 6 1.6737 -2.7096 -0.0317 7 6 1.8068 -4.0861 -0.0613 8 6 2.3785 -4.7365 1.0320 9 6 2.5270 -6.2083 1.0124 10 8 2.1521 -6.8441 0.0468 11 7 3.0781 -6.8440 2.0654 12 6 3.5790 -6.1987 3.2925 13 6 3.5123 -7.3069 4.3761 14 6 3.9181 -8.5622 3.5594 15 1 3.5015 -9.4646 4.0068 16 7 5.3758 -8.6612 3.4512 17 6 6.0848 -9.3724 4.3821 18 1 5.5694 -9.8600 5.1964 19 6 7.4658 -9.4666 4.2793 20 7 8.0940 -8.8720 3.2872 21 14 8.4329 -10.4374 5.5489 22 1 8.5523 -11.8499 5.1062 23 1 9.7882 -9.8484 5.6953 24 1 7.7270 -10.3858 6.8543 25 6 3.2854 -8.2952 2.1774 26 1 2.3293 -8.8132 2.1013 27 6 4.2289 -8.7730 1.0717 28 7 2.7909 -4.0485 2.0902 29 6 2.6789 -2.7409 2.1499 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.2311 -2.1792 -0.8619 38 1 1.4725 -4.6498 -0.9197 39 1 4.6066 -5.8632 3.1525 40 1 2.9395 -5.3602 3.5684 41 1 2.5026 -7.4091 4.7737 42 1 4.2271 -7.1132 5.1758 43 1 5.8387 -8.2230 2.7201 44 1 9.0590 -8.9381 3.2151 45 1 5.1792 -8.2453 1.1519 46 1 4.3982 -9.8446 1.1767 47 1 3.7812 -8.5694 0.0991 48 1 3.0253 -2.2153 3.0275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987631326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:49 Heat of formation + Delta-G solvation = -7.788260 kcal Electronic energy + Delta-G solvation = -28886.150470 eV Core-core repulsion = 24942.503584 eV Total energy + Delta-G solvation = -3943.646885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14624 -39.87307 -38.57766 -37.23270 -33.99474 -33.76229 -32.57394 -31.60018 -30.73471 -30.30078 -28.63361 -27.81384 -25.17101 -24.83213 -23.99394 -23.39407 -22.41131 -21.46805 -20.07456 -18.91650 -18.59156 -17.50993 -17.14680 -16.77641 -16.10817 -15.85478 -15.45280 -14.99824 -14.77712 -14.59599 -14.29384 -14.00262 -13.83326 -13.61469 -13.36353 -13.11826 -13.04238 -12.85195 -12.75763 -12.62081 -12.42314 -12.24156 -12.12400 -11.64004 -11.47845 -11.28137 -11.12161 -10.93392 -10.87011 -10.69636 -10.52365 -10.24416 -10.07742 -10.06600 -9.80783 -9.54027 -9.34243 -8.88059 -8.70558 -8.14165 -6.96135 -5.76535 -3.05558 0.60425 0.95282 2.62503 2.85216 3.26775 3.44279 3.49644 3.51163 3.81986 4.14250 4.18163 4.32009 4.36355 4.48245 4.58746 4.59277 4.76971 4.87568 5.02046 5.15641 5.18639 5.24755 5.29038 5.34354 5.53297 5.55979 5.60001 5.62104 5.66743 5.73126 5.77831 5.83820 5.90003 5.98017 6.07673 6.18835 6.44565 6.47170 6.57351 6.67675 6.72043 6.84907 6.91846 6.95969 7.09999 7.60210 7.71224 7.92757 8.41442 8.44177 9.53311 10.09630 10.44803 11.45820 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.002496 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.165159 B =11216.140220 C =11909.304212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.300 6.300 5 C 0.101 3.899 6 C -0.179 4.179 7 C -0.070 4.070 8 C 0.047 3.953 9 C 0.581 3.419 10 O -0.547 6.547 11 N -0.585 5.585 12 C 0.109 3.891 13 C -0.164 4.164 14 C 0.171 3.829 15 H 0.069 0.931 16 N -0.713 5.713 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.124 3.876 26 H 0.071 0.929 27 C -0.149 4.149 28 N -0.408 5.408 29 C 0.072 3.928 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 19.478 -6.676 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.206 4.206 4 O -0.212 6.212 5 C 0.052 3.948 6 C -0.205 4.205 7 C -0.091 4.091 8 C -0.090 4.090 9 C 0.368 3.632 10 O -0.426 6.426 11 N -0.316 5.316 12 C -0.013 4.013 13 C -0.205 4.205 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.355 5.355 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C 0.021 3.979 26 H 0.089 0.911 27 C -0.207 4.207 28 N -0.120 5.120 29 C -0.089 4.089 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.878 18.714 -6.268 25.330 hybrid contribution 0.369 0.190 -0.436 0.602 sum -15.509 18.904 -6.704 25.354 Atomic orbital electron populations 1.22400 0.94726 1.03279 1.03490 1.22553 0.94569 0.93977 0.87200 1.21861 1.02370 0.93123 1.03264 1.86125 1.80487 1.15657 1.38961 1.20442 0.95137 0.83780 0.95460 1.21706 1.04816 0.94968 0.98975 1.21923 0.94791 0.93632 0.98716 1.21117 1.01428 0.94701 0.91799 1.17319 0.78468 0.85166 0.82198 1.90747 1.51744 1.66594 1.33500 1.48475 1.57363 1.08508 1.17278 1.22647 0.99911 0.96052 0.82705 1.23617 1.00648 0.97917 0.98337 1.21205 0.86663 0.95624 0.90576 0.91305 1.42551 0.99342 1.61668 1.31983 1.19243 0.89272 1.24364 1.04285 0.91048 1.24740 0.96561 1.00996 0.98474 1.69665 1.08166 1.47884 1.32183 0.86196 0.79543 0.79557 0.80892 1.21779 1.21876 1.20761 1.22084 0.98585 0.79426 0.97835 0.91081 1.21919 0.99520 1.01963 0.97299 1.67990 1.12947 1.06993 1.24027 1.22391 0.99427 0.89020 0.98098 0.90729 0.91780 0.91150 0.90654 0.91405 0.90334 0.91252 0.83723 0.83219 0.91305 0.88817 0.92307 0.89591 0.77540 0.93492 0.91537 0.91440 0.92778 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.19 37.15 0.34 -0.59 16 2 C 0.07 0.45 2.85 -26.74 -0.08 0.38 16 3 C -0.15 -0.71 9.56 37.16 0.36 -0.35 16 4 O -0.30 -2.71 9.80 -18.89 -0.19 -2.90 16 5 C 0.10 1.03 6.64 -38.85 -0.26 0.78 16 6 C -0.18 -1.73 8.34 -39.18 -0.33 -2.06 16 7 C -0.07 -0.85 9.62 -39.09 -0.38 -1.23 16 8 C 0.05 0.71 6.72 -83.03 -0.56 0.15 16 9 C 0.58 10.37 7.62 -12.29 -0.09 10.28 16 10 O -0.55 -10.77 15.35 5.33 0.08 -10.69 16 11 N -0.59 -10.50 3.06 -163.95 -0.50 -11.00 16 12 C 0.11 1.86 5.93 -2.41 -0.01 1.85 16 13 C -0.16 -2.85 6.78 -24.46 -0.17 -3.02 16 14 C 0.17 3.39 3.48 -66.09 -0.23 3.16 16 15 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 16 N -0.71 -17.35 4.54 -51.65 -0.23 -17.58 16 17 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.12 2.31 3.43 -66.95 -0.23 2.08 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 C -0.15 -2.95 8.51 37.16 0.32 -2.64 16 28 N -0.41 -5.74 6.57 -9.68 -0.06 -5.80 16 29 C 0.07 0.83 11.14 -17.38 -0.19 0.64 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.37 6.97 -51.93 -0.36 0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.42 6.32 -51.93 -0.33 0.09 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.15 0.99 5.59 -52.49 -0.29 0.70 16 38 H 0.15 1.72 7.63 -52.48 -0.40 1.32 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.46 5.86 -51.93 -0.30 1.15 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.39 10.20 5.67 -40.82 -0.23 9.97 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 1.47 6.20 -51.93 -0.32 1.15 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.05 1.06 6.88 -51.93 -0.36 0.70 16 48 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -31.79 383.35 -8.40 -40.18 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.22 Total: 9.61 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.75 Total: 2.37 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.08 Total: -61.48 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.10 Total: -13.59 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.79 -8.40 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987631326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.396 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds