Wall clock time and date at job start Tue Mar 31 2020 17:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 O 1.42903 * 109.46908 * 119.99930 * 2 1 3 5 5 C 1.35727 * 116.99709 * 85.30170 * 4 2 1 6 6 C 1.39222 * 120.38374 * 354.63460 * 5 4 2 7 7 C 1.38328 * 118.44645 * 180.02562 * 6 5 4 8 8 C 1.39466 * 119.12816 * 359.97368 * 7 6 5 9 9 C 1.47933 * 119.65145 * 180.02562 * 8 7 6 10 10 O 1.21541 * 120.00469 * 0.02563 * 9 8 7 11 11 N 1.34782 * 119.99480 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.64802 * 359.69500 * 11 9 8 13 13 C 1.55135 * 104.72073 * 155.81410 * 12 11 9 14 14 C 1.55163 * 101.48326 * 37.29466 * 13 12 11 15 15 H 1.08999 * 110.72030 * 205.96451 * 14 13 12 16 16 N 1.46503 * 110.71774 * 82.69622 * 14 13 12 17 17 C 1.36937 * 119.99995 * 91.47647 * 16 14 13 18 18 H 1.07998 * 120.00047 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99970 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47044 * 90.00186 * 21 19 17 23 23 H 1.48499 * 109.47193 * 209.99629 * 21 19 17 24 24 H 1.48491 * 109.47264 * 330.00203 * 21 19 17 25 25 C 1.47026 * 125.64387 * 180.02562 * 11 9 8 26 26 H 1.09002 * 109.88107 * 300.44308 * 25 11 9 27 27 C 1.53003 * 109.88080 * 61.60864 * 25 11 9 28 28 N 1.32789 * 120.68863 * 0.02562 * 8 7 6 29 29 C 1.31377 * 121.69496 * 359.97438 * 28 8 7 30 30 H 1.09005 * 109.47377 * 60.00009 * 1 2 3 31 31 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47430 * 299.99917 * 1 2 3 33 33 H 1.08999 * 109.47009 * 239.99870 * 2 1 3 34 34 H 1.08998 * 109.47440 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47499 * 300.00096 * 3 2 1 36 36 H 1.08999 * 109.47125 * 59.99941 * 3 2 1 37 37 H 1.08002 * 120.77804 * 359.74527 * 6 5 4 38 38 H 1.08003 * 120.43348 * 179.97438 * 7 6 5 39 39 H 1.08998 * 110.37064 * 274.74428 * 12 11 9 40 40 H 1.08999 * 110.36954 * 37.07497 * 12 11 9 41 41 H 1.08998 * 111.19525 * 279.19108 * 13 12 11 42 42 H 1.08995 * 110.93990 * 155.28835 * 13 12 11 43 43 H 0.96992 * 119.99947 * 271.47798 * 16 14 13 44 44 H 0.97000 * 120.00268 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.47223 * 58.54473 * 27 25 11 46 46 H 1.08998 * 109.46512 * 178.54320 * 27 25 11 47 47 H 1.08992 * 109.46988 * 298.54339 * 27 25 11 48 48 H 1.07998 * 119.59812 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1182 -2.0244 1.0958 6 6 1.6737 -2.7096 -0.0317 7 6 1.8068 -4.0861 -0.0613 8 6 2.3785 -4.7365 1.0320 9 6 2.5270 -6.2083 1.0124 10 8 2.1521 -6.8441 0.0468 11 7 3.0781 -6.8440 2.0654 12 6 3.5790 -6.1987 3.2925 13 6 3.5123 -7.3069 4.3761 14 6 3.9181 -8.5622 3.5594 15 1 3.5015 -9.4646 4.0068 16 7 5.3758 -8.6612 3.4512 17 6 6.0848 -9.3724 4.3821 18 1 5.5694 -9.8600 5.1964 19 6 7.4658 -9.4666 4.2793 20 7 8.0940 -8.8720 3.2872 21 14 8.4329 -10.4374 5.5489 22 1 8.5523 -11.8499 5.1062 23 1 9.7882 -9.8484 5.6953 24 1 7.7270 -10.3858 6.8543 25 6 3.2854 -8.2952 2.1774 26 1 2.3293 -8.8132 2.1013 27 6 4.2289 -8.7730 1.0717 28 7 2.7909 -4.0485 2.0902 29 6 2.6789 -2.7409 2.1499 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.2311 -2.1792 -0.8619 38 1 1.4725 -4.6498 -0.9197 39 1 4.6066 -5.8632 3.1525 40 1 2.9395 -5.3602 3.5684 41 1 2.5026 -7.4091 4.7737 42 1 4.2271 -7.1132 5.1758 43 1 5.8387 -8.2230 2.7201 44 1 9.0590 -8.9381 3.2151 45 1 5.1792 -8.2453 1.1519 46 1 4.3982 -9.8446 1.1767 47 1 3.7812 -8.5694 0.0991 48 1 3.0253 -2.2153 3.0275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987631326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:48 Heat of formation + Delta-G solvation = -26.920737 kcal Electronic energy + Delta-G solvation = -28886.980116 eV Core-core repulsion = 24942.503584 eV Total energy + Delta-G solvation = -3944.476532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.09250 -41.07456 -39.57438 -38.65196 -35.75931 -34.36699 -33.66104 -33.13514 -32.25140 -31.49748 -30.25842 -28.19559 -26.74547 -25.94371 -25.47076 -24.76922 -23.56845 -22.26025 -21.41332 -20.27581 -19.39873 -19.35264 -18.41022 -17.92254 -17.36577 -16.68714 -16.64935 -16.38028 -15.89389 -15.65626 -15.61562 -15.42829 -15.07230 -14.69266 -14.62524 -14.34617 -14.19548 -14.00002 -13.77547 -13.47495 -13.41303 -13.17537 -13.13888 -12.95477 -12.87397 -12.81992 -12.52377 -12.31455 -12.22259 -12.04706 -11.97872 -11.75881 -11.66357 -11.45828 -11.20880 -10.95354 -10.91541 -10.43195 -9.74083 -9.44019 -8.97236 -7.89843 -5.18195 -0.38332 0.08923 1.50685 1.51722 1.60031 1.65388 1.87425 2.03880 2.59370 2.75655 3.08644 3.41201 3.47600 3.59656 3.74850 3.79603 3.84769 3.90218 3.95762 3.99682 4.02543 4.14091 4.28135 4.37054 4.46020 4.59694 4.64060 4.69619 4.73159 4.77823 4.81394 4.82744 4.88105 4.89521 4.91221 5.06811 5.11601 5.23518 5.24706 5.26747 5.29397 5.34999 5.43729 5.49998 5.59036 6.15139 6.31162 6.51006 6.64916 7.08725 7.38151 8.11834 8.36193 9.33702 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.002496 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.165159 B =11216.140220 C =11909.304212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 C -0.148 4.148 4 O -0.305 6.305 5 C 0.115 3.885 6 C -0.168 4.168 7 C -0.067 4.067 8 C 0.015 3.985 9 C 0.577 3.423 10 O -0.573 6.573 11 N -0.590 5.590 12 C 0.120 3.880 13 C -0.151 4.151 14 C 0.164 3.836 15 H 0.078 0.922 16 N -0.724 5.724 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.291 1.291 23 H -0.301 1.301 24 H -0.267 1.267 25 C 0.128 3.872 26 H 0.086 0.914 27 C -0.135 4.135 28 N -0.426 5.426 29 C 0.065 3.935 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.042 0.958 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.375 0.625 44 H 0.248 0.752 45 H 0.038 0.962 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.144 21.295 -6.386 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 C -0.205 4.205 4 O -0.217 6.217 5 C 0.066 3.934 6 C -0.194 4.194 7 C -0.088 4.088 8 C -0.121 4.121 9 C 0.366 3.634 10 O -0.454 6.454 11 N -0.321 5.321 12 C -0.002 4.002 13 C -0.192 4.192 14 C 0.054 3.946 15 H 0.096 0.904 16 N -0.365 5.365 17 C -0.364 4.364 18 H 0.100 0.900 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.218 1.218 23 H -0.228 1.228 24 H -0.192 1.192 25 C 0.024 3.976 26 H 0.104 0.896 27 C -0.194 4.194 28 N -0.138 5.138 29 C -0.098 4.098 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.195 0.805 38 H 0.172 0.828 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.210 0.790 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.926 20.539 -5.956 27.905 hybrid contribution 0.869 -0.185 -0.589 1.067 sum -17.057 20.354 -6.546 27.351 Atomic orbital electron populations 1.22399 0.93712 1.03164 1.04396 1.22906 0.95426 0.94511 0.86444 1.21899 1.02015 0.92285 1.04275 1.86147 1.80166 1.14768 1.40653 1.20443 0.93562 0.84507 0.94933 1.21965 1.03883 0.93880 0.99647 1.22001 0.94193 0.94704 0.97923 1.20793 1.04530 0.93163 0.93638 1.17827 0.77531 0.86558 0.81455 1.90711 1.52856 1.67620 1.34216 1.48514 1.57700 1.08063 1.17815 1.22541 0.98820 0.96482 0.82317 1.23487 1.01871 0.96201 0.97616 1.21423 0.84279 0.97103 0.91822 0.90418 1.42686 1.01186 1.61395 1.31225 1.19651 0.89584 1.23009 1.04205 0.90027 1.25519 0.97793 1.02895 1.00621 1.69836 1.07794 1.50202 1.34382 0.85162 0.77683 0.77794 0.79232 1.21827 1.22777 1.19156 1.21967 0.98622 0.80486 0.96489 0.89580 1.21754 0.98436 1.01223 0.97945 1.67812 1.13506 1.08285 1.24219 1.22698 0.99485 0.88355 0.99275 0.88636 0.92362 0.91532 0.89648 0.92009 0.88179 0.91424 0.80540 0.82845 0.93951 0.86895 0.89270 0.90808 0.79032 0.94285 0.94332 0.91901 0.92884 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.19 71.98 0.66 -0.63 16 2 C 0.06 0.58 2.85 30.59 0.09 0.67 16 3 C -0.15 -1.00 9.56 71.98 0.69 -0.31 16 4 O -0.31 -4.75 9.80 -90.50 -0.89 -5.63 16 5 C 0.12 2.11 6.64 22.75 0.15 2.26 16 6 C -0.17 -2.86 8.34 22.53 0.19 -2.67 16 7 C -0.07 -1.57 9.62 22.59 0.22 -1.35 16 8 C 0.01 0.44 6.72 41.87 0.28 0.72 16 9 C 0.58 20.75 7.62 86.81 0.66 21.42 16 10 O -0.57 -22.84 15.35 -3.84 -0.06 -22.90 16 11 N -0.59 -21.26 3.06 -790.88 -2.42 -23.69 16 12 C 0.12 4.10 5.93 86.94 0.52 4.62 16 13 C -0.15 -5.09 6.78 32.07 0.22 -4.88 16 14 C 0.16 6.42 3.48 46.18 0.16 6.58 16 15 H 0.08 2.92 8.09 -2.39 -0.02 2.90 16 16 N -0.72 -35.81 4.54 -317.32 -1.44 -37.25 16 17 C -0.23 -12.56 9.96 84.03 0.84 -11.72 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 21 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.13 4.78 3.43 45.34 0.16 4.94 16 26 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 27 C -0.14 -5.54 8.51 71.98 0.61 -4.93 16 28 N -0.43 -11.73 6.57 -184.53 -1.21 -12.95 16 29 C 0.06 1.39 11.14 85.00 0.95 2.34 16 30 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.50 6.97 -2.39 -0.02 0.49 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.65 6.32 -2.39 -0.02 0.64 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.18 1.79 5.59 -2.91 -0.02 1.77 16 38 H 0.15 3.39 7.63 -2.91 -0.02 3.36 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.11 3.43 5.86 -2.39 -0.01 3.41 16 41 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.38 20.50 5.67 -92.71 -0.53 19.98 16 44 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.04 1.78 6.20 -2.39 -0.01 1.76 16 46 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.05 2.14 6.88 -2.39 -0.02 2.13 16 48 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.95 383.35 3.59 -66.37 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.45 Total: 34.30 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.85 Total: 13.17 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -4.79 Total: -133.38 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.95 Total: -28.54 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -69.95 3.59 -66.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987631326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.447 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds