Wall clock time and date at job start Tue Mar 31 2020 17:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.70059 * 2 1 4 4 C 1.53192 * 109.58954 * 120.35486 * 2 1 3 5 5 H 1.09002 * 109.49793 * 294.40889 * 4 2 1 6 6 N 1.46504 * 109.49474 * 54.46897 * 4 2 1 7 7 C 1.34772 * 120.00036 * 204.66080 * 6 4 2 8 8 O 1.21284 * 120.00302 * 0.27773 * 7 6 4 9 9 C 1.50703 * 120.00099 * 180.27726 * 7 6 4 10 10 C 1.50700 * 109.46877 * 179.97438 * 9 7 6 11 11 C 1.35453 * 126.77578 * 90.00523 * 10 9 7 12 12 C 1.41375 * 103.98661 * 179.97438 * 11 10 9 13 13 C 1.50705 * 126.80124 * 180.02562 * 12 11 10 14 14 C 1.53001 * 117.49826 * 343.75020 * 13 12 11 15 15 C 1.53003 * 117.49485 * 275.08987 * 13 12 11 16 16 N 1.30172 * 106.39540 * 0.02562 * 12 11 10 17 17 O 1.20920 * 111.60680 * 359.72239 * 16 12 11 18 18 C 1.53037 * 109.34310 * 174.44011 * 4 2 1 19 19 C 1.53047 * 109.53645 * 298.61918 * 18 4 2 20 20 C 1.53189 * 109.31045 * 61.36484 * 19 18 4 21 21 N 1.46926 * 108.77739 * 305.36207 * 20 19 18 22 22 C 1.36934 * 120.63502 * 233.62744 * 21 20 19 23 23 H 1.08004 * 120.00016 * 150.17514 * 22 21 20 24 24 C 1.38812 * 120.00211 * 330.18475 * 22 21 20 25 25 N 1.31624 * 119.99544 * 344.46765 * 24 22 21 26 26 Si 1.86796 * 120.00376 * 164.47724 * 24 22 21 27 27 H 1.48504 * 109.47162 * 59.99625 * 26 24 22 28 28 H 1.48500 * 109.47051 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47022 * 299.99573 * 26 24 22 30 30 H 1.08998 * 109.46946 * 299.64291 * 1 2 3 31 31 H 1.09000 * 109.47166 * 59.64223 * 1 2 3 32 32 H 1.09000 * 109.46901 * 179.64153 * 1 2 3 33 33 H 0.96998 * 119.99769 * 24.93919 * 6 4 2 34 34 H 1.08991 * 109.47316 * 300.00056 * 9 7 6 35 35 H 1.09004 * 109.47116 * 60.00063 * 9 7 6 36 36 H 1.08001 * 128.00469 * 359.97438 * 11 10 9 37 37 H 1.08998 * 115.54599 * 129.42339 * 13 12 11 38 38 H 1.09006 * 117.49960 * 359.97438 * 14 13 12 39 39 H 1.08994 * 117.49918 * 145.01983 * 14 13 12 40 40 H 1.09001 * 117.49491 * 214.97457 * 15 13 12 41 41 H 1.08994 * 117.50279 * 359.97438 * 15 13 12 42 42 H 1.08994 * 109.45775 * 58.63577 * 18 4 2 43 43 H 1.09000 * 109.45878 * 178.61397 * 18 4 2 44 44 H 1.08996 * 109.49925 * 181.31538 * 19 18 4 45 45 H 1.08998 * 109.49838 * 301.41893 * 19 18 4 46 46 H 1.09005 * 109.59104 * 65.15336 * 20 19 18 47 47 H 1.08999 * 109.58844 * 185.57873 * 20 19 18 48 48 H 0.97000 * 119.99755 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 1.7656 -0.1671 2.1369 6 7 1.4514 -2.0679 1.3071 7 6 1.3347 -2.6992 2.4921 8 8 1.7153 -2.1571 3.5081 9 6 0.7312 -4.0787 2.5548 10 6 0.7171 -4.5563 3.9841 11 6 -0.2744 -4.3768 4.8893 12 6 0.2097 -5.0106 6.0566 13 6 -0.4946 -5.1163 7.3847 14 6 -1.6776 -4.1784 7.6336 15 6 -0.3490 -3.9437 8.3567 16 7 1.3843 -5.4849 5.7569 17 8 1.6810 -5.2469 4.6090 18 6 3.5676 -0.8479 1.1710 19 6 3.9577 -1.6659 -0.0623 20 6 3.4665 -0.9474 -1.3229 21 7 2.0239 -0.7001 -1.1945 22 6 1.1555 -1.1142 -2.1689 23 1 0.1413 -1.3811 -1.9106 24 6 1.5786 -1.1910 -3.4888 25 7 2.6893 -0.5901 -3.8597 26 14 0.5716 -2.1470 -4.7383 27 1 -0.7890 -1.5594 -4.8314 28 1 1.2331 -2.0756 -6.0659 29 1 0.4700 -3.5656 -4.3111 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0277 -0.0064 33 1 1.1470 -2.5015 0.4946 34 1 -0.2887 -4.0469 2.1719 35 1 1.3255 -4.7631 1.9493 36 1 -1.2167 -3.8673 4.7512 37 1 -0.5488 -6.1186 7.8096 38 1 -1.9462 -3.4847 6.8368 39 1 -2.5100 -4.5636 8.2225 40 1 -0.3079 -4.1747 9.4212 41 1 0.2565 -3.0962 8.0359 42 1 4.0062 0.1474 1.1001 43 1 3.9374 -1.3448 2.0679 44 1 5.0420 -1.7698 -0.1019 45 1 3.4990 -2.6530 -0.0041 46 1 3.9917 0.0016 -1.4309 47 1 3.6536 -1.5724 -2.1961 48 1 2.9848 -0.6435 -4.7821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993424806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:08 Heat of formation + Delta-G solvation = 67.745610 kcal Electronic energy + Delta-G solvation = -29304.991185 eV Core-core repulsion = 25364.619694 eV Total energy + Delta-G solvation = -3940.371491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.95281 -39.83230 -37.78975 -37.71652 -34.02695 -33.71929 -32.99060 -32.43019 -31.74060 -29.73397 -28.22488 -26.22016 -25.05246 -24.77741 -23.11705 -22.38611 -22.10016 -21.01412 -20.64986 -19.68112 -18.79617 -17.82233 -17.32304 -16.71577 -16.47059 -16.04565 -15.44654 -15.20888 -14.99921 -14.71340 -14.12585 -14.06118 -13.84259 -13.69004 -13.36697 -13.06680 -12.95738 -12.62667 -12.32448 -12.18543 -11.90784 -11.85018 -11.64608 -11.32715 -11.28573 -11.23751 -11.02016 -10.76317 -10.67851 -10.66309 -10.58193 -10.17252 -10.06740 -9.90310 -9.81805 -9.70975 -9.36528 -9.29569 -8.62403 -8.51365 -6.73034 -5.86957 -3.32978 1.39378 2.10451 2.79911 2.95299 3.30659 3.36818 3.38462 3.40174 3.60643 3.90840 4.31720 4.39697 4.52285 4.64563 4.81640 4.92719 4.97701 5.11405 5.15526 5.25273 5.27498 5.29893 5.39319 5.52485 5.54386 5.57720 5.59775 5.70138 5.76365 5.80285 5.91504 5.94140 6.06548 6.16772 6.27433 6.35957 6.48901 6.61515 6.63349 6.73291 6.89122 6.90225 7.03063 7.32708 7.60818 7.71633 7.88769 8.22719 8.36257 8.48989 9.12118 9.75052 10.32720 11.20978 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002705 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.766580 B =10347.241525 C =10671.385542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.135 3.865 5 H 0.076 0.924 6 N -0.696 5.696 7 C 0.511 3.489 8 O -0.546 6.546 9 C -0.067 4.067 10 C 0.003 3.997 11 C -0.218 4.218 12 C 0.046 3.954 13 C -0.086 4.086 14 C -0.163 4.163 15 C -0.164 4.164 16 N -0.361 5.361 17 O 0.105 5.895 18 C -0.122 4.122 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.259 4.259 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.169 0.831 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.018 0.982 47 H 0.085 0.915 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -6.677 15.896 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.029 3.971 5 H 0.094 0.906 6 N -0.348 5.348 7 C 0.296 3.704 8 O -0.424 6.424 9 C -0.107 4.107 10 C -0.061 4.061 11 C -0.240 4.240 12 C -0.112 4.112 13 C -0.104 4.104 14 C -0.200 4.200 15 C -0.202 4.202 16 N -0.064 5.064 17 O 0.038 5.962 18 C -0.160 4.160 19 C -0.179 4.179 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.389 4.389 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.186 0.814 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.104 0.896 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.611 -6.945 17.085 19.277 hybrid contribution -1.157 -0.214 -1.452 1.869 sum -6.767 -7.159 15.633 18.478 Atomic orbital electron populations 1.21775 0.95612 1.01420 1.00446 1.20735 0.93342 0.93934 0.86812 0.94309 1.21556 0.92939 0.82778 0.99821 0.90633 1.45946 1.61393 1.18646 1.08781 1.20114 0.79420 0.86708 0.84189 1.90715 1.49955 1.67308 1.34422 1.20183 1.05419 0.96017 0.89118 1.23587 0.88677 0.97217 0.96664 1.22221 1.02742 1.06953 0.92050 1.22543 0.92018 0.99917 0.96710 1.20076 1.01753 0.97098 0.91518 1.23036 0.91717 1.01889 1.03392 1.23040 1.00215 0.99230 0.97690 1.73782 1.15872 1.21166 0.95557 1.84820 1.39304 1.54675 1.17369 1.21773 0.95436 1.00521 0.98294 1.22138 0.99000 0.99520 0.97242 1.20793 0.83162 0.97165 0.94283 1.44171 1.03090 1.64830 1.18853 1.19085 0.95196 1.38410 0.86164 0.91247 1.25120 0.97777 0.99292 0.97038 1.70015 1.23980 1.43326 1.16896 0.86417 0.79612 0.80144 0.80803 1.20933 1.21737 1.20976 0.94240 0.91776 0.92769 0.75315 0.85567 0.86296 0.81381 0.86092 0.88151 0.87860 0.87980 0.88330 0.91923 0.93108 0.93438 0.92812 0.96406 0.89640 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.73 37.16 0.29 -1.98 16 2 C 0.16 2.96 3.20 -67.56 -0.22 2.74 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.14 2.26 2.32 -67.81 -0.16 2.10 16 5 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 6 N -0.70 -10.37 3.47 -53.69 -0.19 -10.55 16 7 C 0.51 7.42 7.79 -10.99 -0.09 7.33 16 8 O -0.55 -9.98 15.70 5.55 0.09 -9.89 16 9 C -0.07 -0.71 6.27 -29.03 -0.18 -0.89 16 10 C 0.00 0.03 5.98 -35.30 -0.21 -0.18 16 11 C -0.22 -2.59 10.40 -39.38 -0.41 -3.00 16 12 C 0.05 0.60 6.95 -82.10 -0.57 0.02 16 13 C -0.09 -0.84 6.33 -91.77 -0.58 -1.42 16 14 C -0.16 -1.23 10.05 -26.69 -0.27 -1.50 16 15 C -0.16 -1.42 10.24 -26.69 -0.27 -1.69 16 16 N -0.36 -5.42 12.07 33.42 0.40 -5.01 16 17 O 0.11 1.56 11.20 17.18 0.19 1.75 16 18 C -0.12 -2.08 5.57 -26.69 -0.15 -2.23 16 19 C -0.14 -2.53 5.93 -26.61 -0.16 -2.69 16 20 C 0.17 3.76 5.28 -3.71 -0.02 3.74 16 21 N -0.59 -12.77 2.64 -164.72 -0.44 -13.21 16 22 C -0.26 -6.18 8.58 -15.06 -0.13 -6.31 16 23 H 0.07 1.58 6.23 -52.48 -0.33 1.26 16 24 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -24.44 11.23 55.49 0.62 -23.81 16 26 Si 0.90 20.07 29.58 -169.99 -5.03 15.05 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 32 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 33 H 0.41 6.06 7.77 -40.82 -0.32 5.74 16 34 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.17 1.58 7.62 -52.49 -0.40 1.18 16 37 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.76 7.34 -51.93 -0.38 0.38 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.97 7.53 -51.93 -0.39 0.57 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.11 6.14 -51.93 -0.32 1.80 16 48 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -30.13 385.06 -9.22 -39.35 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.47 Total: 6.38 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.21 Total: -5.85 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.41 Total: -52.58 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.28 Total: -8.15 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.13 -9.22 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993424806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.093 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds