Wall clock time and date at job start Tue Mar 31 2020 17:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58119 * 2 1 4 4 C 1.53188 * 109.58861 * 239.71591 * 2 1 3 5 5 H 1.09007 * 109.49981 * 305.41809 * 4 2 1 6 6 N 1.46504 * 109.50258 * 65.48292 * 4 2 1 7 7 C 1.34774 * 120.00441 * 205.00185 * 6 4 2 8 8 O 1.21285 * 119.99563 * 359.97438 * 7 6 4 9 9 C 1.50692 * 120.00086 * 180.26997 * 7 6 4 10 10 C 1.50702 * 109.47212 * 179.72169 * 9 7 6 11 11 C 1.35459 * 126.77316 * 90.00420 * 10 9 7 12 12 C 1.41375 * 103.98319 * 179.97438 * 11 10 9 13 13 C 1.50705 * 126.80089 * 180.02562 * 12 11 10 14 14 C 1.52997 * 117.49934 * 343.75681 * 13 12 11 15 15 C 1.52990 * 117.50198 * 275.09022 * 13 12 11 16 16 N 1.30173 * 106.39869 * 0.02562 * 12 11 10 17 17 O 1.20927 * 111.60415 * 359.72041 * 16 12 11 18 18 C 1.53043 * 109.31364 * 185.43192 * 4 2 1 19 19 C 1.53044 * 109.53503 * 61.36577 * 18 4 2 20 20 C 1.53195 * 109.31199 * 298.63392 * 19 18 4 21 21 N 1.46921 * 109.70435 * 120.35193 * 2 1 3 22 22 C 1.36942 * 120.63107 * 353.44703 * 21 2 1 23 23 H 1.07999 * 120.00042 * 41.19503 * 22 21 2 24 24 C 1.38809 * 120.00103 * 221.19716 * 22 21 2 25 25 N 1.31614 * 120.00213 * 214.88902 * 24 22 21 26 26 Si 1.86806 * 119.99911 * 34.89241 * 24 22 21 27 27 H 1.48499 * 109.46975 * 84.62154 * 26 24 22 28 28 H 1.48500 * 109.46875 * 204.62292 * 26 24 22 29 29 H 1.48503 * 109.46958 * 324.62258 * 26 24 22 30 30 H 1.09003 * 109.46822 * 180.28460 * 1 2 3 31 31 H 1.08992 * 109.47408 * 300.28412 * 1 2 3 32 32 H 1.09004 * 109.46851 * 60.28815 * 1 2 3 33 33 H 0.97003 * 119.99180 * 24.99743 * 6 4 2 34 34 H 1.08998 * 109.47468 * 299.72595 * 9 7 6 35 35 H 1.09006 * 109.47051 * 59.72898 * 9 7 6 36 36 H 1.07994 * 128.00578 * 359.97438 * 11 10 9 37 37 H 1.09001 * 115.54629 * 129.41490 * 13 12 11 38 38 H 1.09001 * 117.49782 * 359.97438 * 14 13 12 39 39 H 1.08998 * 117.50101 * 145.01912 * 14 13 12 40 40 H 1.09006 * 117.49878 * 214.97836 * 15 13 12 41 41 H 1.08999 * 117.50292 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.46160 * 181.38113 * 18 4 2 43 43 H 1.08990 * 109.45961 * 301.34528 * 18 4 2 44 44 H 1.09001 * 109.49728 * 178.68412 * 19 18 4 45 45 H 1.08997 * 109.50020 * 58.58399 * 19 18 4 46 46 H 1.09002 * 109.58582 * 294.85130 * 20 19 18 47 47 H 1.09003 * 109.70429 * 174.49344 * 20 19 18 48 48 H 0.97001 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6045 -1.7245 -1.2924 6 7 1.6677 0.0280 -2.4437 7 6 1.5443 -0.6034 -3.6280 8 8 1.7449 -1.7972 -3.7025 9 6 1.1635 0.1751 -4.8608 10 6 1.1003 -0.7566 -6.0437 11 6 0.0175 -1.4465 -6.4755 12 6 0.4920 -2.1566 -7.6022 13 6 -0.3001 -3.0921 -8.4789 14 6 -1.6337 -3.6096 -7.9363 15 6 -0.4273 -4.5477 -8.0252 16 7 1.7485 -1.8423 -7.7323 17 8 2.1029 -1.0621 -6.8791 18 6 3.5679 -0.8433 -1.1729 19 6 3.9604 -1.6607 0.0600 20 6 3.4685 -0.9434 1.3211 21 7 2.0254 -0.6989 1.1936 22 6 1.1585 -1.1143 2.1690 23 1 0.2110 -1.5554 1.8972 24 6 1.4977 -0.9682 3.5071 25 7 1.1198 -1.8736 4.3844 26 14 2.4906 0.5134 4.0626 27 1 1.5767 1.6578 4.3082 28 1 3.2161 0.1816 5.3151 29 1 3.4682 0.8785 3.0060 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.5076 0.9828 -2.3841 34 1 0.1886 0.6389 -4.7110 35 1 1.9090 0.9483 -5.0469 36 1 -0.9777 -1.4527 -6.0562 37 1 -0.2320 -2.9030 -9.5502 38 1 -1.9381 -3.2737 -6.9450 39 1 -2.4429 -3.7614 -8.6506 40 1 -0.4434 -5.3162 -8.7981 41 1 0.0622 -4.8289 -7.0928 42 1 3.9382 -1.3390 -2.0702 43 1 4.0045 0.1529 -1.1022 44 1 5.0450 -1.7624 0.0989 45 1 3.5038 -2.6487 0.0020 46 1 3.9920 0.0066 1.4288 47 1 3.6578 -1.5661 2.1956 48 1 1.3565 -1.7714 5.3195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993424809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:10 Heat of formation + Delta-G solvation = 48.345951 kcal Electronic energy + Delta-G solvation = -28867.344574 eV Core-core repulsion = 24926.131851 eV Total energy + Delta-G solvation = -3941.212723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.93670 -41.08775 -39.33191 -38.50637 -35.88889 -34.71341 -34.39160 -33.90709 -33.46345 -31.67629 -29.41944 -27.75841 -26.65118 -25.64258 -24.28258 -23.69366 -22.97050 -22.34153 -21.72457 -21.29937 -20.53630 -18.87957 -18.40091 -18.33489 -17.72450 -17.34733 -16.82962 -16.53766 -16.25139 -16.07590 -15.49412 -15.37107 -15.11287 -15.04490 -14.85636 -14.71455 -14.36855 -14.20697 -13.72305 -13.38264 -13.21156 -13.01615 -12.94740 -12.70424 -12.60559 -12.53541 -12.43483 -12.36596 -12.04597 -12.00904 -11.81743 -11.73475 -11.54127 -11.37864 -11.28083 -11.05254 -10.69918 -10.49534 -10.32144 -9.99708 -8.63364 -8.23084 -5.50698 0.42175 1.18035 1.41735 1.48359 1.56596 1.65333 2.00024 2.36193 2.50758 2.69131 2.97361 3.12727 3.45394 3.47418 3.80888 3.83263 3.91530 3.97063 4.04714 4.08750 4.10929 4.16003 4.31069 4.31712 4.40215 4.47870 4.60392 4.64137 4.68304 4.75183 4.75862 4.80000 4.92044 4.96770 5.01872 5.06195 5.08408 5.08924 5.12874 5.18304 5.24544 5.30179 5.42226 5.53289 5.65503 5.95934 6.28938 6.62574 7.02993 7.26939 7.32673 7.67875 8.16897 8.96730 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002440 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.417746 B =11471.205772 C =11837.320944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.057 0.943 4 C 0.146 3.854 5 H 0.049 0.951 6 N -0.701 5.701 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.051 4.051 10 C -0.011 4.011 11 C -0.222 4.222 12 C 0.039 3.961 13 C -0.104 4.104 14 C -0.143 4.143 15 C -0.172 4.172 16 N -0.395 5.395 17 O 0.086 5.914 18 C -0.111 4.111 19 C -0.128 4.128 20 C 0.138 3.862 21 N -0.605 5.605 22 C -0.261 4.261 23 H 0.041 0.959 24 C -0.002 4.002 25 N -0.930 5.930 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.306 1.306 29 H -0.237 1.237 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.420 0.580 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.192 0.808 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 7.771 -24.510 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 H 0.075 0.925 4 C 0.039 3.961 5 H 0.068 0.932 6 N -0.353 5.353 7 C 0.300 3.700 8 O -0.467 6.467 9 C -0.091 4.091 10 C -0.075 4.075 11 C -0.243 4.243 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.180 4.180 15 C -0.210 4.210 16 N -0.101 5.101 17 O 0.021 5.979 18 C -0.150 4.150 19 C -0.167 4.167 20 C 0.013 3.987 21 N -0.330 5.330 22 C -0.390 4.390 23 H 0.058 0.942 24 C -0.201 4.201 25 N -0.572 5.572 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.234 1.234 29 H -0.160 1.160 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.258 0.742 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.209 0.791 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.611 6.547 -25.250 26.135 hybrid contribution -0.268 0.406 1.575 1.648 sum -1.879 6.952 -23.676 24.747 Atomic orbital electron populations 1.21711 0.94574 1.00611 1.01536 1.20893 0.94325 0.94141 0.85106 0.92534 1.21242 0.94858 0.95469 0.84542 0.93248 1.45769 1.69653 1.13086 1.06809 1.20899 0.76303 0.87579 0.85246 1.90769 1.51898 1.17759 1.86280 1.20340 1.09858 0.95444 0.83476 1.24154 0.87036 1.00889 0.95468 1.22638 1.02489 1.00886 0.98267 1.23122 0.90431 1.00496 0.97886 1.20265 1.00131 0.93904 0.97943 1.23158 0.90583 1.00728 1.03538 1.23082 1.02668 0.91957 1.03284 1.73771 1.15991 1.08676 1.11631 1.84758 1.36592 1.45978 1.30529 1.21704 0.95289 1.00859 0.97103 1.21931 1.00741 0.98635 0.95440 1.21374 0.83965 0.97205 0.96126 1.44394 1.02631 1.66341 1.19635 1.18400 1.01625 1.33786 0.85238 0.94182 1.26103 0.98984 0.98978 0.96068 1.70189 1.50247 1.33169 1.03595 0.86327 0.79576 0.82874 0.77706 1.21641 1.23367 1.16030 0.95376 0.93411 0.89722 0.74176 0.81193 0.82763 0.79128 0.85072 0.88209 0.85288 0.86127 0.90551 0.92877 0.90168 0.90138 0.94246 0.94210 0.94122 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.97 71.98 0.57 -3.59 16 2 C 0.16 5.45 3.03 44.97 0.14 5.58 16 3 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.15 4.44 2.00 45.07 0.09 4.53 16 5 H 0.05 1.94 7.58 -2.38 -0.02 1.92 16 6 N -0.70 -14.21 4.57 -442.16 -2.02 -16.23 16 7 C 0.51 11.46 7.79 87.65 0.68 12.15 16 8 O -0.59 -20.33 15.70 -3.05 -0.05 -20.38 16 9 C -0.05 -0.61 6.27 29.10 0.18 -0.43 16 10 C -0.01 -0.23 5.98 25.04 0.15 -0.08 16 11 C -0.22 -4.47 10.40 22.40 0.23 -4.24 16 12 C 0.04 0.91 6.95 43.58 0.30 1.21 16 13 C -0.10 -1.84 6.33 -11.54 -0.07 -1.91 16 14 C -0.14 -1.82 10.05 30.62 0.31 -1.52 16 15 C -0.17 -2.84 10.24 30.62 0.31 -2.52 16 16 N -0.39 -11.14 12.07 -49.55 -0.60 -11.74 16 17 O 0.09 2.26 11.20 71.68 0.80 3.06 16 18 C -0.11 -3.29 5.46 30.62 0.17 -3.13 16 19 C -0.13 -4.40 6.08 30.67 0.19 -4.21 16 20 C 0.14 5.60 4.60 86.36 0.40 6.00 16 21 N -0.61 -26.66 2.47 -675.23 -1.67 -28.33 16 22 C -0.26 -14.05 8.44 84.03 0.71 -13.34 16 23 H 0.04 2.41 6.82 -2.91 -0.02 2.39 16 24 C 0.00 -0.14 4.82 84.86 0.41 0.27 16 25 N -0.93 -56.57 13.97 21.65 0.30 -56.27 16 26 Si 0.91 42.84 27.39 68.60 1.88 44.72 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 29 H -0.24 -10.11 5.24 99.48 0.52 -9.59 16 30 H 0.03 1.07 7.39 -2.39 -0.02 1.05 16 31 H 0.05 1.74 7.71 -2.39 -0.02 1.72 16 32 H 0.08 1.96 7.78 -2.38 -0.02 1.94 16 33 H 0.42 4.96 8.61 -92.71 -0.80 4.16 16 34 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.15 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.19 2.78 7.62 -2.91 -0.02 2.76 16 37 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.10 1.29 7.34 -2.39 -0.02 1.28 16 39 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.04 1.51 6.71 -2.39 -0.02 1.50 16 47 H 0.04 1.86 7.01 -2.39 -0.02 1.84 16 48 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -78.91 385.66 3.41 -75.50 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.01 Total: 14.88 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.77 Total: -5.22 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.98 Total: -112.56 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.75 Total: -17.32 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -78.91 3.41 -75.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993424809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.850 kcal (2) G-P(sol) polarization free energy of solvation -78.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds