Wall clock time and date at job start Tue Mar 31 2020 17:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.58564 * 2 1 4 4 C 1.53190 * 109.59035 * 120.28625 * 2 1 3 5 5 H 1.08996 * 109.50032 * 54.47105 * 4 2 1 6 6 N 1.46503 * 109.52201 * 294.39031 * 4 2 1 7 7 C 1.34779 * 120.00236 * 155.14715 * 6 4 2 8 8 O 1.21283 * 119.99571 * 359.97438 * 7 6 4 9 9 C 1.50692 * 120.00195 * 180.02562 * 7 6 4 10 10 C 1.50693 * 109.47219 * 179.97438 * 9 7 6 11 11 C 1.35452 * 126.78126 * 89.70585 * 10 9 7 12 12 C 1.41377 * 103.98839 * 179.90760 * 11 10 9 13 13 C 1.50703 * 126.80170 * 180.09092 * 12 11 10 14 14 C 1.52999 * 117.50027 * 343.92166 * 13 12 11 15 15 C 1.52999 * 117.50154 * 275.29623 * 13 12 11 16 16 N 1.30167 * 106.39560 * 0.36384 * 12 11 10 17 17 O 1.20918 * 111.60826 * 359.76429 * 16 12 11 18 18 C 1.53045 * 109.31591 * 174.42830 * 4 2 1 19 19 C 1.53046 * 109.53179 * 298.63151 * 18 4 2 20 20 C 1.53192 * 109.31285 * 61.36697 * 19 18 4 21 21 N 1.46925 * 109.58736 * 239.57586 * 2 1 3 22 22 C 1.36935 * 120.63234 * 6.61972 * 21 2 1 23 23 H 1.08004 * 119.99880 * 330.17189 * 22 21 2 24 24 C 1.38814 * 119.99910 * 150.16336 * 22 21 2 25 25 N 1.31612 * 120.00059 * 344.48600 * 24 22 21 26 26 Si 1.86805 * 119.99699 * 164.48723 * 24 22 21 27 27 H 1.48503 * 109.47066 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46945 * 119.99991 * 26 24 22 29 29 H 1.48503 * 109.46863 * 239.99919 * 26 24 22 30 30 H 1.08995 * 109.47368 * 299.71282 * 1 2 3 31 31 H 1.09002 * 109.47366 * 59.71848 * 1 2 3 32 32 H 1.09007 * 109.47065 * 179.71896 * 1 2 3 33 33 H 0.97008 * 120.00025 * 335.14562 * 6 4 2 34 34 H 1.09006 * 109.46861 * 299.99624 * 9 7 6 35 35 H 1.09004 * 109.47558 * 59.99321 * 9 7 6 36 36 H 1.08003 * 128.00570 * 0.02562 * 11 10 9 37 37 H 1.09003 * 115.54747 * 129.62775 * 13 12 11 38 38 H 1.08997 * 117.49924 * 359.97438 * 14 13 12 39 39 H 1.08994 * 117.50023 * 145.01911 * 14 13 12 40 40 H 1.08996 * 117.49800 * 214.97962 * 15 13 12 41 41 H 1.09001 * 117.49783 * 359.97438 * 15 13 12 42 42 H 1.08997 * 109.46028 * 178.61550 * 18 4 2 43 43 H 1.08995 * 109.46471 * 58.64754 * 18 4 2 44 44 H 1.09001 * 109.49625 * 181.32202 * 19 18 4 45 45 H 1.09000 * 109.49804 * 301.41425 * 19 18 4 46 46 H 1.08991 * 109.58670 * 65.15226 * 20 19 18 47 47 H 1.08998 * 109.58295 * 185.57856 * 20 19 18 48 48 H 0.97005 * 120.00165 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6031 -1.7237 1.2934 6 7 1.6705 0.0291 2.4438 7 6 1.5504 -0.6011 3.6292 8 8 1.7507 -1.7949 3.7042 9 6 1.1661 0.1773 4.8609 10 6 1.1003 -0.7541 6.0436 11 6 2.1143 -1.0704 6.8842 12 6 1.5271 -1.9678 7.8055 13 6 2.2074 -2.6389 8.9708 14 6 3.7373 -2.6432 8.9888 15 6 2.9721 -3.9344 8.6919 16 7 0.2840 -2.1040 7.4443 17 8 0.0283 -1.4379 6.4681 18 6 3.5676 -0.8464 1.1712 19 6 3.9570 -1.6657 -0.0615 20 6 3.4651 -0.9484 -1.3226 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1154 -2.1676 23 1 0.1396 -1.3820 -1.9088 24 6 1.5764 -1.1928 -3.4875 25 7 2.6871 -0.5923 -3.8591 26 14 0.5687 -2.1491 -4.7364 27 1 -0.6262 -2.7267 -4.0703 28 1 0.1365 -1.2375 -5.8260 29 1 1.3953 -3.2438 -5.3054 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.5100 0.9839 2.3837 34 1 1.9104 0.9513 5.0484 35 1 0.1911 0.6403 4.7087 36 1 3.1346 -0.7173 6.8580 37 1 1.6927 -2.5544 9.9279 38 1 4.2518 -2.1609 8.1577 39 1 4.2294 -2.5613 9.9579 40 1 2.9608 -4.7020 9.4657 41 1 2.9828 -4.3016 7.6656 42 1 3.9379 -1.3421 2.0685 43 1 4.0062 0.1488 1.0991 44 1 5.0413 -1.7696 -0.1015 45 1 3.4984 -2.6527 -0.0020 46 1 3.9903 0.0003 -1.4317 47 1 3.6518 -1.5744 -2.1952 48 1 2.9827 -0.6467 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993424813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:14 Heat of formation + Delta-G solvation = 66.913090 kcal Electronic energy + Delta-G solvation = -28819.362054 eV Core-core repulsion = 24878.954462 eV Total energy + Delta-G solvation = -3940.407592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.03532 -39.85805 -37.83620 -37.73766 -34.39329 -33.83461 -33.07812 -32.57418 -31.70476 -29.67923 -28.24908 -26.13885 -25.01819 -24.84301 -23.17760 -22.47543 -22.14436 -20.74634 -20.59549 -19.88404 -19.33694 -17.87923 -17.43192 -16.79192 -16.39088 -16.11456 -15.65491 -15.36654 -14.97038 -14.77943 -14.21770 -13.95999 -13.81365 -13.75461 -13.50082 -13.21544 -12.93021 -12.59782 -12.41093 -12.28294 -11.88955 -11.73327 -11.70621 -11.57297 -11.30537 -11.14414 -10.95482 -10.78162 -10.71342 -10.59129 -10.34335 -10.19500 -10.05261 -10.03560 -9.92263 -9.74258 -9.49447 -9.32643 -8.74945 -8.48839 -6.70146 -5.82618 -3.27392 1.30180 2.02919 2.64679 2.85033 3.35036 3.35621 3.38044 3.44172 3.46571 3.85496 4.22310 4.46311 4.48504 4.58287 4.72436 4.80104 4.82496 4.97146 5.03782 5.25692 5.26154 5.30471 5.36671 5.46407 5.48895 5.52296 5.56970 5.71582 5.74434 5.77503 5.86169 5.92368 6.03971 6.17430 6.29655 6.36910 6.48612 6.57454 6.66577 6.71127 6.80460 6.95584 7.03213 7.36243 7.61905 7.64083 7.79673 8.15284 8.29781 8.42233 9.17099 9.79639 10.35912 11.26081 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.002360 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.152387 B =11860.142460 C =12177.766520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.715 5.715 7 C 0.512 3.488 8 O -0.532 6.532 9 C -0.065 4.065 10 C -0.003 4.003 11 C -0.215 4.215 12 C 0.047 3.953 13 C -0.087 4.087 14 C -0.163 4.163 15 C -0.163 4.163 16 N -0.359 5.359 17 O 0.107 5.893 18 C -0.116 4.116 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.252 4.252 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.087 0.913 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 3.512 22.434 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.104 0.896 6 N -0.366 5.366 7 C 0.296 3.704 8 O -0.409 6.409 9 C -0.105 4.105 10 C -0.067 4.067 11 C -0.237 4.237 12 C -0.111 4.111 13 C -0.106 4.106 14 C -0.200 4.200 15 C -0.201 4.201 16 N -0.061 5.061 17 O 0.039 5.961 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.186 0.814 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.105 0.895 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.705 1.934 22.757 22.849 hybrid contribution 0.314 0.383 -0.898 1.026 sum 1.019 2.316 21.858 22.004 Atomic orbital electron populations 1.21825 0.95618 1.01769 1.00249 1.20558 0.93277 0.93532 0.86623 0.95451 1.21833 0.95121 0.96898 0.83639 0.89572 1.46086 1.69998 1.12317 1.08163 1.20147 0.77857 0.88095 0.84287 1.90763 1.49686 1.14922 1.85482 1.20177 1.06297 0.95940 0.88135 1.23553 0.87231 0.97951 0.98004 1.22233 1.01230 1.03050 0.97183 1.22556 0.90554 0.99274 0.98760 1.20083 0.93641 1.01502 0.95339 1.23024 0.92008 1.01217 1.03774 1.23038 1.02575 0.90915 1.03607 1.73787 1.17941 1.13267 1.01142 1.84825 1.34771 1.43329 1.33145 1.21755 0.95348 1.00038 0.98337 1.22188 0.99238 0.99727 0.96890 1.20827 0.83126 0.97190 0.94417 1.44040 1.03146 1.64989 1.18335 1.19198 0.95199 1.37769 0.85995 0.91162 1.25090 0.97889 0.99451 0.96991 1.70031 1.24091 1.43731 1.16702 0.86247 0.79674 0.79599 0.81404 1.20190 1.21721 1.21548 0.94252 0.91739 0.92658 0.76837 0.85591 0.86274 0.81361 0.86049 0.88177 0.87834 0.87920 0.88282 0.93268 0.92722 0.93000 0.92532 0.96240 0.89481 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.84 37.15 0.29 -2.14 16 2 C 0.17 3.21 3.03 -67.60 -0.21 3.00 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.22 1.99 -67.81 -0.14 2.09 16 5 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 6 N -0.72 -9.05 4.58 -53.69 -0.25 -9.30 16 7 C 0.51 6.71 7.79 -10.99 -0.09 6.62 16 8 O -0.53 -9.63 15.70 5.55 0.09 -9.54 16 9 C -0.06 -0.55 6.27 -29.04 -0.18 -0.73 16 10 C 0.00 -0.04 5.98 -35.31 -0.21 -0.25 16 11 C -0.22 -2.36 10.40 -39.38 -0.41 -2.77 16 12 C 0.05 0.57 6.95 -82.10 -0.57 0.00 16 13 C -0.09 -0.81 6.33 -91.77 -0.58 -1.39 16 14 C -0.16 -1.17 10.04 -26.73 -0.27 -1.44 16 15 C -0.16 -1.39 10.23 -26.73 -0.27 -1.66 16 16 N -0.36 -5.14 12.07 33.42 0.40 -4.74 16 17 O 0.11 1.48 11.20 17.16 0.19 1.67 16 18 C -0.12 -1.98 5.46 -26.68 -0.15 -2.13 16 19 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 20 C 0.17 3.92 5.28 -3.71 -0.02 3.90 16 21 N -0.58 -13.80 2.99 -164.78 -0.49 -14.29 16 22 C -0.25 -6.59 8.58 -15.06 -0.13 -6.72 16 23 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 24 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 25 N -0.90 -25.40 11.23 55.49 0.62 -24.78 16 26 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.04 0.55 7.79 -51.93 -0.40 0.15 16 31 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 32 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.40 3.75 8.61 -40.82 -0.35 3.40 16 34 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.17 1.43 7.62 -52.48 -0.40 1.03 16 37 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 0.72 7.34 -51.93 -0.38 0.34 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 2.27 6.15 -51.93 -0.32 1.95 16 48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -32.96 388.25 -9.35 -42.31 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.57 Total: 2.95 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.17 Total: -6.44 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.29 Total: -53.10 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.28 Total: -7.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.96 -9.35 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993424813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.227 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds