Wall clock time and date at job start Tue Mar 31 2020 17:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.58564 * 2 1 4 4 C 1.53190 * 109.59035 * 120.28625 * 2 1 3 5 5 H 1.08996 * 109.50032 * 54.47105 * 4 2 1 6 6 N 1.46503 * 109.52201 * 294.39031 * 4 2 1 7 7 C 1.34779 * 120.00236 * 155.14715 * 6 4 2 8 8 O 1.21283 * 119.99571 * 359.97438 * 7 6 4 9 9 C 1.50692 * 120.00195 * 180.02562 * 7 6 4 10 10 C 1.50693 * 109.47219 * 179.97438 * 9 7 6 11 11 C 1.35452 * 126.78126 * 89.70585 * 10 9 7 12 12 C 1.41377 * 103.98839 * 179.90760 * 11 10 9 13 13 C 1.50703 * 126.80170 * 180.09092 * 12 11 10 14 14 C 1.52999 * 117.50027 * 343.92166 * 13 12 11 15 15 C 1.52999 * 117.50154 * 275.29623 * 13 12 11 16 16 N 1.30167 * 106.39560 * 0.36384 * 12 11 10 17 17 O 1.20918 * 111.60826 * 359.76429 * 16 12 11 18 18 C 1.53045 * 109.31591 * 174.42830 * 4 2 1 19 19 C 1.53046 * 109.53179 * 298.63151 * 18 4 2 20 20 C 1.53192 * 109.31285 * 61.36697 * 19 18 4 21 21 N 1.46925 * 109.58736 * 239.57586 * 2 1 3 22 22 C 1.36935 * 120.63234 * 6.61972 * 21 2 1 23 23 H 1.08004 * 119.99880 * 330.17189 * 22 21 2 24 24 C 1.38814 * 119.99910 * 150.16336 * 22 21 2 25 25 N 1.31612 * 120.00059 * 344.48600 * 24 22 21 26 26 Si 1.86805 * 119.99699 * 164.48723 * 24 22 21 27 27 H 1.48503 * 109.47066 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46945 * 119.99991 * 26 24 22 29 29 H 1.48503 * 109.46863 * 239.99919 * 26 24 22 30 30 H 1.08995 * 109.47368 * 299.71282 * 1 2 3 31 31 H 1.09002 * 109.47366 * 59.71848 * 1 2 3 32 32 H 1.09007 * 109.47065 * 179.71896 * 1 2 3 33 33 H 0.97008 * 120.00025 * 335.14562 * 6 4 2 34 34 H 1.09006 * 109.46861 * 299.99624 * 9 7 6 35 35 H 1.09004 * 109.47558 * 59.99321 * 9 7 6 36 36 H 1.08003 * 128.00570 * 0.02562 * 11 10 9 37 37 H 1.09003 * 115.54747 * 129.62775 * 13 12 11 38 38 H 1.08997 * 117.49924 * 359.97438 * 14 13 12 39 39 H 1.08994 * 117.50023 * 145.01911 * 14 13 12 40 40 H 1.08996 * 117.49800 * 214.97962 * 15 13 12 41 41 H 1.09001 * 117.49783 * 359.97438 * 15 13 12 42 42 H 1.08997 * 109.46028 * 178.61550 * 18 4 2 43 43 H 1.08995 * 109.46471 * 58.64754 * 18 4 2 44 44 H 1.09001 * 109.49625 * 181.32202 * 19 18 4 45 45 H 1.09000 * 109.49804 * 301.41425 * 19 18 4 46 46 H 1.08991 * 109.58670 * 65.15226 * 20 19 18 47 47 H 1.08998 * 109.58295 * 185.57856 * 20 19 18 48 48 H 0.97005 * 120.00165 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6031 -1.7237 1.2934 6 7 1.6705 0.0291 2.4438 7 6 1.5504 -0.6011 3.6292 8 8 1.7507 -1.7949 3.7042 9 6 1.1661 0.1773 4.8609 10 6 1.1003 -0.7541 6.0436 11 6 2.1143 -1.0704 6.8842 12 6 1.5271 -1.9678 7.8055 13 6 2.2074 -2.6389 8.9708 14 6 3.7373 -2.6432 8.9888 15 6 2.9721 -3.9344 8.6919 16 7 0.2840 -2.1040 7.4443 17 8 0.0283 -1.4379 6.4681 18 6 3.5676 -0.8464 1.1712 19 6 3.9570 -1.6657 -0.0615 20 6 3.4651 -0.9484 -1.3226 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1154 -2.1676 23 1 0.1396 -1.3820 -1.9088 24 6 1.5764 -1.1928 -3.4875 25 7 2.6871 -0.5923 -3.8591 26 14 0.5687 -2.1491 -4.7364 27 1 -0.6262 -2.7267 -4.0703 28 1 0.1365 -1.2375 -5.8260 29 1 1.3953 -3.2438 -5.3054 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.5100 0.9839 2.3837 34 1 1.9104 0.9513 5.0484 35 1 0.1911 0.6403 4.7087 36 1 3.1346 -0.7173 6.8580 37 1 1.6927 -2.5544 9.9279 38 1 4.2518 -2.1609 8.1577 39 1 4.2294 -2.5613 9.9579 40 1 2.9608 -4.7020 9.4657 41 1 2.9828 -4.3016 7.6656 42 1 3.9379 -1.3421 2.0685 43 1 4.0062 0.1488 1.0991 44 1 5.0413 -1.7696 -0.1015 45 1 3.4984 -2.6527 -0.0020 46 1 3.9903 0.0003 -1.4317 47 1 3.6518 -1.5744 -2.1952 48 1 2.9827 -0.6467 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993424813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:13 Heat of formation + Delta-G solvation = 46.604936 kcal Electronic energy + Delta-G solvation = -28820.242682 eV Core-core repulsion = 24878.954462 eV Total energy + Delta-G solvation = -3941.288219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.93051 -41.06008 -39.24353 -38.50383 -35.89743 -34.70167 -34.25133 -33.88260 -33.37264 -31.18915 -29.32873 -27.70009 -26.81438 -25.63300 -24.18968 -23.64891 -22.95940 -22.32547 -21.73169 -21.15158 -20.51954 -18.85828 -18.35886 -18.28139 -17.70419 -17.26354 -16.84691 -16.49132 -16.35014 -15.62848 -15.54442 -15.47819 -15.08847 -15.01297 -14.74146 -14.56619 -14.28862 -14.13127 -13.38677 -13.28737 -13.14052 -12.98388 -12.83159 -12.69594 -12.53381 -12.49004 -12.42335 -12.34946 -12.04266 -12.00209 -11.79929 -11.75574 -11.60977 -11.37542 -11.19512 -11.00697 -10.68948 -10.53323 -10.32735 -9.98284 -8.63438 -7.85703 -5.31420 0.42650 1.18947 1.44773 1.48394 1.57066 1.65658 2.00971 2.35421 2.55390 2.69948 3.13648 3.30161 3.47247 3.62931 3.82488 3.83839 3.94018 4.01341 4.05960 4.09349 4.12751 4.23653 4.31932 4.39088 4.40497 4.54812 4.64536 4.65165 4.68953 4.76368 4.80544 4.90472 4.92913 4.96347 5.05972 5.07167 5.09922 5.15042 5.19247 5.25747 5.32135 5.49339 5.51390 5.62244 5.71806 5.78010 6.42830 6.62964 7.17258 7.27597 7.32379 7.88089 8.38869 9.21174 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.002360 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.152387 B =11860.142460 C =12177.766520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.040 0.960 4 C 0.147 3.853 5 H 0.051 0.949 6 N -0.701 5.701 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.052 4.052 10 C -0.012 4.012 11 C -0.219 4.219 12 C 0.039 3.961 13 C -0.105 4.105 14 C -0.141 4.141 15 C -0.172 4.172 16 N -0.396 5.396 17 O 0.083 5.917 18 C -0.107 4.107 19 C -0.131 4.131 20 C 0.176 3.824 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.070 0.930 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.957 3.043 27 H -0.270 1.270 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.419 0.581 34 H 0.172 0.828 35 H 0.152 0.848 36 H 0.194 0.806 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.007 0.993 47 H 0.050 0.950 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 5.199 24.750 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.057 0.943 4 C 0.040 3.960 5 H 0.070 0.930 6 N -0.353 5.353 7 C 0.300 3.700 8 O -0.466 6.466 9 C -0.092 4.092 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.119 4.119 13 C -0.124 4.124 14 C -0.178 4.178 15 C -0.210 4.210 16 N -0.102 5.102 17 O 0.019 5.981 18 C -0.146 4.146 19 C -0.171 4.171 20 C 0.051 3.949 21 N -0.326 5.326 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.578 5.578 26 Si 0.786 3.214 27 H -0.194 1.194 28 H -0.218 1.218 29 H -0.221 1.221 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.257 0.743 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.211 0.789 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.036 3.676 25.092 25.380 hybrid contribution 0.212 -0.152 -1.555 1.577 sum 1.247 3.524 23.536 23.831 Atomic orbital electron populations 1.21751 0.94548 1.00853 1.01526 1.20743 0.94217 0.93672 0.85579 0.94271 1.21259 0.94800 0.95414 0.84502 0.93050 1.45800 1.69661 1.13077 1.06790 1.20899 0.76289 0.87606 0.85216 1.90760 1.51979 1.17615 1.86296 1.20340 1.09422 0.95193 0.84222 1.24158 0.86774 0.97894 0.98778 1.22635 1.02232 1.02525 0.96642 1.23138 0.90228 0.99113 0.99425 1.20266 0.95107 1.02160 0.94855 1.23149 0.90402 0.99190 1.05065 1.23073 1.03292 0.91688 1.02949 1.73773 1.19507 1.14703 1.02221 1.84766 1.35983 1.43935 1.33396 1.21668 0.95380 1.00453 0.97107 1.22030 1.00235 0.98664 0.96165 1.20614 0.83263 0.96159 0.94879 1.44282 1.03101 1.65869 1.19299 1.19439 0.95418 1.36619 0.86617 0.91237 1.25737 0.99094 1.00840 0.98694 1.70157 1.25623 1.45423 1.16602 0.85354 0.78509 0.78157 0.79335 1.19428 1.21790 1.22094 0.90046 0.93374 0.94595 0.74348 0.81018 0.83057 0.78891 0.85165 0.88047 0.85288 0.86186 0.90503 0.92679 0.91018 0.91015 0.94218 0.97482 0.93119 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.84 71.98 0.56 -3.83 16 2 C 0.16 6.08 3.03 44.97 0.14 6.22 16 3 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 4 C 0.15 4.79 1.99 45.07 0.09 4.88 16 5 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 6 N -0.70 -15.47 4.58 -442.16 -2.02 -17.49 16 7 C 0.51 11.99 7.79 87.65 0.68 12.67 16 8 O -0.59 -20.65 15.70 -3.04 -0.05 -20.70 16 9 C -0.05 -0.66 6.27 29.10 0.18 -0.48 16 10 C -0.01 -0.25 5.98 25.04 0.15 -0.10 16 11 C -0.22 -4.37 10.40 22.40 0.23 -4.14 16 12 C 0.04 0.92 6.95 43.58 0.30 1.22 16 13 C -0.11 -1.83 6.33 -11.54 -0.07 -1.91 16 14 C -0.14 -1.69 10.04 30.59 0.31 -1.38 16 15 C -0.17 -2.75 10.23 30.59 0.31 -2.44 16 16 N -0.40 -11.40 12.07 -49.57 -0.60 -11.99 16 17 O 0.08 2.27 11.20 71.57 0.80 3.07 16 18 C -0.11 -3.48 5.46 30.62 0.17 -3.31 16 19 C -0.13 -5.01 6.08 30.67 0.19 -4.83 16 20 C 0.18 8.29 5.28 86.36 0.46 8.74 16 21 N -0.60 -28.77 2.99 -675.24 -2.02 -30.79 16 22 C -0.25 -13.29 8.58 84.03 0.72 -12.57 16 23 H 0.07 3.63 6.23 -2.91 -0.02 3.61 16 24 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 25 N -0.93 -53.94 11.23 21.65 0.24 -53.70 16 26 Si 0.96 44.74 29.58 68.60 2.03 46.77 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 30 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 31 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 32 H 0.03 1.34 7.40 -2.38 -0.02 1.32 16 33 H 0.42 5.91 8.61 -92.70 -0.80 5.11 16 34 H 0.17 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.19 2.65 7.62 -2.91 -0.02 2.63 16 37 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 1.20 7.34 -2.39 -0.02 1.18 16 39 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.05 2.74 6.15 -2.39 -0.01 2.72 16 48 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -76.42 388.25 3.40 -73.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.17 Total: 15.28 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.84 Total: -3.46 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.39 Total: -113.97 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.75 Total: -17.63 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -76.42 3.40 -73.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993424813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.626 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds