Wall clock time and date at job start Tue Mar 31 2020 17:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.58300 * 2 1 4 4 C 1.53197 * 109.58894 * 120.42776 * 2 1 3 5 5 H 1.09006 * 109.49616 * 294.40956 * 4 2 1 6 6 N 1.46494 * 109.49675 * 54.47053 * 4 2 1 7 7 C 1.34774 * 120.00280 * 205.00165 * 6 4 2 8 8 O 1.21691 * 119.99930 * 0.02562 * 7 6 4 9 9 C 1.46678 * 120.00053 * 179.97438 * 7 6 4 10 10 C 1.38165 * 126.18828 * 179.68880 * 9 7 6 11 11 C 1.38940 * 106.94611 * 179.85071 * 10 9 7 12 12 C 1.36268 * 108.02301 * 0.46675 * 11 10 9 13 13 N 1.34739 * 108.83963 * 359.65608 * 12 11 10 14 14 H 0.96995 * 125.71423 * 180.02562 * 13 12 11 15 15 C 1.51093 * 122.58164 * 179.56786 * 12 11 10 16 16 C 1.53547 * 107.71920 * 344.17786 * 15 12 11 17 17 O 1.42996 * 109.68619 * 48.01127 * 16 15 12 18 18 C 1.43417 * 114.33269 * 288.95655 * 17 16 15 19 19 C 1.53038 * 109.31205 * 174.42487 * 4 2 1 20 20 C 1.53037 * 109.53704 * 298.63605 * 19 4 2 21 21 C 1.53191 * 109.31805 * 61.36573 * 20 19 4 22 22 N 1.46925 * 108.77199 * 305.36615 * 21 20 19 23 23 C 1.36932 * 120.63106 * 233.62217 * 22 21 20 24 24 H 1.07997 * 120.00251 * 150.16121 * 23 22 21 25 25 C 1.38820 * 120.00099 * 330.16607 * 23 22 21 26 26 N 1.31615 * 119.99767 * 344.49382 * 25 23 22 27 27 Si 1.86793 * 119.99937 * 164.49037 * 25 23 22 28 28 H 1.48506 * 109.47084 * 60.00014 * 27 25 23 29 29 H 1.48499 * 109.47287 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47529 * 299.99967 * 27 25 23 31 31 H 1.08996 * 109.46637 * 180.28285 * 1 2 3 32 32 H 1.08998 * 109.47097 * 300.28048 * 1 2 3 33 33 H 1.09000 * 109.47191 * 60.28012 * 1 2 3 34 34 H 0.97010 * 120.00080 * 25.00163 * 6 4 2 35 35 H 1.07998 * 126.52588 * 359.97438 * 10 9 7 36 36 H 1.09003 * 109.80913 * 103.72968 * 15 12 11 37 37 H 1.09004 * 109.81266 * 224.62028 * 15 12 11 38 38 H 1.08998 * 109.42886 * 287.94290 * 16 15 12 39 39 H 1.08996 * 109.39481 * 168.05442 * 16 15 12 40 40 H 1.09007 * 109.76707 * 291.11398 * 18 17 16 41 41 H 1.08998 * 109.76582 * 170.34299 * 18 17 16 42 42 H 1.09005 * 109.45812 * 178.61629 * 19 4 2 43 43 H 1.08996 * 109.46112 * 58.65587 * 19 4 2 44 44 H 1.09002 * 109.49469 * 301.41186 * 20 19 4 45 45 H 1.08998 * 109.49813 * 181.31984 * 20 19 4 46 46 H 1.09000 * 109.58147 * 65.14665 * 21 20 19 47 47 H 1.08990 * 109.58872 * 185.57636 * 21 20 19 48 48 H 0.97000 * 119.99945 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.7655 -0.1698 2.1367 6 7 1.4515 -2.0696 1.3045 7 6 1.3285 -2.6995 2.4896 8 8 1.7089 -2.1562 3.5099 9 6 0.7351 -4.0396 2.5497 10 6 0.5535 -4.8010 3.6882 11 6 -0.0413 -5.9914 3.2886 12 6 -0.2032 -5.9487 1.9363 13 7 0.2630 -4.7700 1.4793 14 1 0.2667 -4.4835 0.5526 15 6 -0.8150 -7.0872 1.1537 16 6 -0.8085 -8.3303 2.0548 17 8 -1.3274 -7.9935 3.3440 18 6 -0.4593 -7.1689 4.1335 19 6 3.5676 -0.8494 1.1690 20 6 3.9570 -1.6655 -0.0656 21 6 3.4651 -0.9452 -1.3250 22 7 2.0226 -0.6980 -1.1954 23 6 1.1537 -1.1106 -2.1699 24 1 0.1398 -1.3782 -1.9115 25 6 1.5761 -1.1852 -3.4902 26 7 2.6866 -0.5838 -3.8608 27 14 0.5683 -2.1390 -4.7408 28 1 -0.7924 -1.5511 -4.8320 29 1 1.2289 -2.0653 -6.0687 30 1 0.4669 -3.5583 -4.3160 31 1 -0.3632 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5095 -0.8925 34 1 1.1479 -2.5026 0.4912 35 1 0.8209 -4.5230 4.6969 36 1 -1.8392 -6.8368 0.8771 37 1 -0.2255 -7.2778 0.2568 38 1 0.2126 -8.6971 2.1593 39 1 -1.4284 -9.1062 1.6057 40 1 0.4204 -7.7393 4.4317 41 1 -0.9892 -6.8177 5.0189 42 1 3.9379 -1.3474 2.0652 43 1 4.0061 0.1460 1.0995 44 1 3.4984 -2.6527 -0.0086 45 1 5.0412 -1.7693 -0.1060 46 1 3.9903 0.0040 -1.4316 47 1 3.6519 -1.5688 -2.1991 48 1 2.9816 -0.6355 -4.7834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993436679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:45 Heat of formation + Delta-G solvation = -38.263920 kcal Electronic energy + Delta-G solvation = -29987.516291 eV Core-core repulsion = 26042.547882 eV Total energy + Delta-G solvation = -3944.968409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.69801 -40.95348 -39.23895 -38.68053 -35.67872 -34.12834 -33.50678 -33.39901 -32.48651 -31.20490 -29.87258 -28.00712 -26.92121 -26.32126 -24.73815 -23.83336 -22.95094 -22.39055 -21.28708 -20.46160 -19.90535 -19.55774 -18.28505 -17.37609 -17.14980 -16.87157 -16.58971 -16.52310 -16.07720 -15.78203 -15.60189 -15.36301 -15.05101 -14.88888 -14.72144 -14.55601 -14.45847 -14.24609 -14.02247 -13.62567 -13.44867 -13.04082 -12.99533 -12.89458 -12.73006 -12.48804 -12.39686 -12.36242 -12.23132 -11.98083 -11.76565 -11.72209 -11.42726 -11.17425 -11.06350 -10.76350 -10.51646 -10.07358 -9.86948 -8.99792 -8.63666 -7.84298 -5.31726 0.40540 1.48430 1.49616 1.54617 1.55816 1.96342 2.20985 2.35048 2.51403 2.97228 3.32015 3.55325 3.66552 3.79970 3.94482 4.01944 4.03104 4.07959 4.16809 4.21736 4.33974 4.34999 4.51428 4.56871 4.61731 4.65347 4.71641 4.79403 4.82343 4.90344 4.93311 4.95890 4.99458 5.02347 5.08146 5.13737 5.17960 5.30288 5.39414 5.50188 5.55553 5.69763 5.71110 5.76211 5.82761 6.23312 6.35288 6.41231 6.59747 7.15271 7.17980 7.86203 8.40714 9.22273 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.003917 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.546315 B = 7146.786002 C = 8757.175286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.033 0.967 4 C 0.144 3.856 5 H 0.082 0.918 6 N -0.695 5.695 7 C 0.587 3.413 8 O -0.575 6.575 9 C -0.076 4.076 10 C -0.097 4.097 11 C -0.235 4.235 12 C 0.059 3.941 13 N -0.516 5.516 14 H 0.425 0.575 15 C -0.088 4.088 16 C 0.065 3.935 17 O -0.396 6.396 18 C 0.138 3.862 19 C -0.116 4.116 20 C -0.125 4.125 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.252 4.252 24 H 0.079 0.921 25 C -0.045 4.045 26 N -0.934 5.934 27 Si 0.959 3.041 28 H -0.279 1.279 29 H -0.304 1.304 30 H -0.273 1.273 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.403 0.597 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.062 0.938 46 H -0.005 1.005 47 H 0.055 0.945 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -13.611 11.145 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.051 0.949 4 C 0.037 3.963 5 H 0.100 0.900 6 N -0.345 5.345 7 C 0.376 3.624 8 O -0.456 6.456 9 C -0.189 4.189 10 C -0.124 4.124 11 C -0.241 4.241 12 C -0.062 4.062 13 N -0.111 5.111 14 H 0.264 0.736 15 C -0.126 4.126 16 C -0.012 4.012 17 O -0.314 6.314 18 C 0.062 3.938 19 C -0.155 4.155 20 C -0.164 4.164 21 C 0.055 3.945 22 N -0.320 5.320 23 C -0.382 4.382 24 H 0.097 0.903 25 C -0.241 4.241 26 N -0.580 5.580 27 Si 0.788 3.212 28 H -0.205 1.205 29 H -0.231 1.231 30 H -0.198 1.198 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.239 0.761 35 H 0.167 0.833 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.014 0.986 47 H 0.074 0.926 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.480 -13.132 11.584 18.349 hybrid contribution 0.199 0.378 -2.030 2.075 sum -5.281 -12.754 9.554 16.788 Atomic orbital electron populations 1.21697 0.94313 1.01521 1.00941 1.20841 0.94432 0.93528 0.86176 0.94924 1.21368 0.92928 0.83062 0.98893 0.90042 1.45791 1.61717 1.18480 1.08500 1.17234 0.77875 0.83796 0.83528 1.90767 1.52520 1.67141 1.35134 1.20379 1.14675 0.95149 0.88702 1.20944 1.00937 0.93035 0.97496 1.20198 1.10484 0.99249 0.94217 1.20836 1.01906 0.88799 0.94676 1.41709 1.46218 1.13747 1.09448 0.73634 1.21210 1.01788 0.90985 0.98647 1.22759 1.00860 0.95115 0.82435 1.87992 1.45641 1.69316 1.28497 1.21123 0.94143 0.86421 0.92135 1.21726 0.95420 1.00693 0.97610 1.21943 0.99745 0.98835 0.95879 1.20562 0.83342 0.95782 0.94835 1.44330 1.02925 1.65493 1.19229 1.19416 0.95584 1.36852 0.86384 0.90318 1.25792 0.98858 1.00668 0.98814 1.70171 1.25853 1.45356 1.16594 0.85481 0.78200 0.79363 0.78185 1.20503 1.23076 1.19834 0.92784 0.91852 0.93232 0.76123 0.83293 0.88496 0.87625 0.91869 0.85636 0.90802 0.87207 0.92663 0.91207 0.93234 0.91983 0.98647 0.92631 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.74 71.98 0.56 -3.78 16 2 C 0.16 5.92 3.20 44.98 0.14 6.06 16 3 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 4 C 0.14 4.90 2.33 45.07 0.10 5.01 16 5 H 0.08 2.79 7.58 -2.38 -0.02 2.77 16 6 N -0.70 -22.34 3.45 -446.14 -1.54 -23.88 16 7 C 0.59 19.58 7.75 86.45 0.67 20.25 16 8 O -0.57 -22.42 16.54 -4.32 -0.07 -22.49 16 9 C -0.08 -2.21 7.07 40.37 0.29 -1.93 16 10 C -0.10 -2.63 10.63 22.42 0.24 -2.39 16 11 C -0.24 -5.40 6.02 -20.11 -0.12 -5.52 16 12 C 0.06 1.26 7.14 41.78 0.30 1.56 16 13 N -0.52 -12.29 5.97 -171.10 -1.02 -13.31 16 14 H 0.42 9.03 8.19 -92.71 -0.76 8.27 16 15 C -0.09 -1.28 6.56 30.16 0.20 -1.09 16 16 C 0.07 0.86 6.78 72.17 0.49 1.35 16 17 O -0.40 -7.35 10.75 -148.98 -1.60 -8.95 16 18 C 0.14 2.48 7.25 71.28 0.52 3.00 16 19 C -0.12 -3.95 5.58 30.62 0.17 -3.77 16 20 C -0.12 -4.56 5.93 30.67 0.18 -4.38 16 21 C 0.18 8.11 5.28 86.36 0.46 8.57 16 22 N -0.60 -26.41 2.64 -675.22 -1.78 -28.19 16 23 C -0.25 -12.07 8.57 84.04 0.72 -11.35 16 24 H 0.08 3.55 6.24 -2.91 -0.02 3.53 16 25 C -0.05 -2.32 4.94 84.86 0.42 -1.90 16 26 N -0.93 -52.02 11.23 21.65 0.24 -51.78 16 27 Si 0.96 41.18 29.58 68.60 2.03 43.21 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 30 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 31 H 0.05 1.78 6.39 -2.39 -0.02 1.77 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.83 7.63 -2.39 -0.02 1.82 16 34 H 0.40 12.82 6.90 -92.70 -0.64 12.18 16 35 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.06 2.84 6.14 -2.39 -0.01 2.82 16 48 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -63.44 374.87 1.18 -62.26 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.41 Total: 33.45 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.33 Total: 9.69 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -4.10 Total: -117.16 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.67 Total: -31.45 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -63.44 1.18 -62.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993436679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.000 kcal (2) G-P(sol) polarization free energy of solvation -63.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds