Wall clock time and date at job start Tue Mar 31 2020 17:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00138 * 2 1 4 4 C 1.50703 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.38355 * 120.34946 * 89.99787 * 4 3 2 6 6 N 1.31923 * 121.08057 * 180.02562 * 5 4 3 7 7 C 1.31696 * 121.87516 * 359.97438 * 6 5 4 8 8 C 1.39518 * 120.57060 * 0.27899 * 7 6 5 9 9 C 1.47837 * 120.55976 * 179.70205 * 8 7 6 10 10 O 1.21549 * 120.00287 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99852 * 359.97438 * 9 8 7 12 12 C 1.46502 * 119.99924 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49647 * 35.06308 * 12 11 9 14 14 C 1.53039 * 109.49804 * 275.00118 * 12 11 9 15 15 C 1.53040 * 109.53876 * 301.41166 * 14 12 11 16 16 C 1.53198 * 109.31114 * 298.63710 * 15 14 12 17 17 N 1.46925 * 108.77783 * 54.63573 * 16 15 14 18 18 C 1.36934 * 120.63487 * 126.41368 * 17 16 15 19 19 H 1.07997 * 119.99910 * 209.00232 * 18 17 16 20 20 C 1.38808 * 120.00087 * 28.99033 * 18 17 16 21 21 N 1.31626 * 119.99877 * 15.04333 * 20 18 17 22 22 Si 1.86794 * 120.00596 * 195.03714 * 20 18 17 23 23 H 1.48504 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47534 * 120.00068 * 22 20 18 25 25 H 1.48496 * 109.47557 * 240.00798 * 22 20 18 26 26 C 1.46929 * 118.73420 * 306.39188 * 17 16 15 27 27 H 1.09005 * 109.58500 * 293.81684 * 26 17 16 28 28 C 1.53001 * 109.58412 * 173.39643 * 26 17 16 29 29 C 1.38355 * 120.34522 * 269.97122 * 4 3 2 30 30 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46943 * 300.00319 * 1 2 3 32 32 H 1.08995 * 109.46728 * 60.00570 * 1 2 3 33 33 H 1.08992 * 109.47536 * 59.99476 * 3 2 1 34 34 H 1.09005 * 109.46667 * 299.99290 * 3 2 1 35 35 H 1.07999 * 119.45865 * 359.97240 * 5 4 3 36 36 H 1.08004 * 119.71118 * 180.02562 * 7 6 5 37 37 H 0.97003 * 120.00334 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46304 * 61.43303 * 14 12 11 39 39 H 1.09000 * 109.45774 * 181.39327 * 14 12 11 40 40 H 1.09006 * 109.49602 * 58.58573 * 15 14 12 41 41 H 1.08996 * 109.50044 * 178.68759 * 15 14 12 42 42 H 1.09008 * 109.58487 * 174.41837 * 16 15 14 43 43 H 1.08991 * 109.58581 * 294.84157 * 16 15 14 44 44 H 0.97001 * 120.00187 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.47273 * 300.70941 * 28 26 17 46 46 H 1.09006 * 109.47036 * 60.70627 * 28 26 17 47 47 H 1.09001 * 109.46880 * 180.70792 * 28 26 17 48 48 H 1.07997 * 120.85677 * 0.04522 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2100 1.1310 -1.1930 6 7 5.5250 1.0263 -1.2093 7 6 6.2319 0.9705 -0.0996 8 6 5.6034 1.0151 1.1452 9 6 6.3968 0.9458 2.3907 10 8 5.8388 0.9861 3.4698 11 7 7.7389 0.8380 2.3297 12 6 8.5251 0.7700 3.5640 13 1 7.9666 0.2198 4.3212 14 6 8.8090 2.1869 4.0676 15 6 9.5639 2.9710 2.9917 16 6 10.9022 2.2816 2.7077 17 7 10.6465 0.8765 2.3628 18 6 11.1401 0.3419 1.2027 19 1 10.6161 -0.4667 0.7150 20 6 12.3139 0.8394 0.6536 21 7 13.1061 1.6033 1.3756 22 14 12.7693 0.4247 -1.1099 23 1 11.7196 -0.4437 -1.7011 24 1 12.8782 1.6769 -1.9007 25 1 14.0716 -0.2886 -1.1303 26 6 9.8516 0.0557 3.2865 27 1 10.3979 -0.0764 4.2205 28 6 9.5763 -1.3093 2.6525 29 6 4.2090 1.1320 1.1949 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.6887 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 3.6689 1.1732 -2.1267 36 1 7.3073 0.8853 -0.1537 37 1 8.1843 0.8063 1.4686 38 1 7.8672 2.6890 4.2893 39 1 9.4149 2.1362 4.9723 40 1 8.9691 3.0009 2.0787 41 1 9.7452 3.9871 3.3419 42 1 11.3992 2.7779 1.8741 43 1 11.5340 2.3311 3.5944 44 1 13.9265 1.9507 0.9920 45 1 9.0357 -1.1725 1.7160 46 1 10.5213 -1.8158 2.4558 47 1 8.9760 -1.9120 3.3340 48 1 3.6899 1.1730 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993468280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:00 Heat of formation + Delta-G solvation = -23.390150 kcal Electronic energy + Delta-G solvation = -29463.562562 eV Core-core repulsion = 25519.239128 eV Total energy + Delta-G solvation = -3944.323434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76039 -39.41908 -38.06694 -37.50768 -34.08527 -33.18462 -32.69398 -32.11355 -31.43701 -29.36497 -27.76584 -26.37956 -25.84016 -25.09545 -24.47557 -22.82098 -21.99148 -20.86245 -20.31508 -18.82904 -17.86953 -17.05704 -16.78530 -16.69519 -16.40180 -15.76360 -15.46601 -15.30856 -14.96640 -14.78532 -14.06004 -13.98688 -13.82961 -13.33675 -13.30142 -13.25376 -13.05339 -12.92081 -12.76443 -12.58532 -12.16191 -11.88374 -11.79637 -11.30838 -11.26872 -11.00160 -10.72131 -10.66439 -10.52995 -10.16040 -10.12162 -10.05862 -10.03439 -9.96685 -9.69435 -9.41789 -9.34603 -9.28157 -8.60660 -8.49083 -6.71689 -5.84022 -3.29776 0.54809 0.98493 2.91803 3.33796 3.39457 3.43074 3.43419 3.50658 3.90743 4.20799 4.43135 4.47563 4.56077 4.72883 4.74825 4.89187 4.97531 5.04026 5.06400 5.25864 5.29905 5.31323 5.34334 5.42049 5.53715 5.58376 5.71317 5.89928 5.92066 5.96631 6.08607 6.19048 6.29001 6.37912 6.38940 6.49881 6.62261 6.64668 6.72882 6.74659 6.90652 6.92600 7.04218 7.35639 7.64523 7.71344 7.75446 7.89290 8.38608 8.47235 9.15051 9.77904 10.34529 11.23693 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.003251 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.745709 B = 8609.767460 C = 9701.583220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.109 3.891 4 C -0.158 4.158 5 C 0.138 3.862 6 N -0.485 5.485 7 C 0.144 3.856 8 C -0.182 4.182 9 C 0.558 3.442 10 O -0.549 6.549 11 N -0.692 5.692 12 C 0.134 3.866 13 H 0.078 0.922 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.170 3.830 17 N -0.586 5.586 18 C -0.257 4.257 19 H 0.072 0.928 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.159 3.841 27 H 0.041 0.959 28 C -0.136 4.136 29 C 0.002 3.998 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.408 0.592 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 0.418 -1.620 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.033 3.967 4 C -0.160 4.160 5 C -0.019 4.019 6 N -0.192 5.192 7 C -0.014 4.014 8 C -0.187 4.187 9 C 0.343 3.657 10 O -0.429 6.429 11 N -0.343 5.343 12 C 0.028 3.972 13 H 0.096 0.904 14 C -0.160 4.160 15 C -0.180 4.180 16 C 0.045 3.955 17 N -0.310 5.310 18 C -0.387 4.387 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.051 3.949 27 H 0.059 0.941 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.246 0.754 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.794 0.297 -1.709 19.870 hybrid contribution -0.011 0.172 -0.466 0.497 sum -19.805 0.469 -2.175 19.930 Atomic orbital electron populations 1.22775 0.80712 1.03024 1.00088 1.87992 1.19823 1.27193 1.95432 1.21213 0.88709 0.85341 1.01477 1.20528 0.95697 1.05485 0.94313 1.22888 0.90058 0.91495 0.97438 1.67797 1.07699 1.12750 1.30969 1.23232 1.00768 0.90650 0.86747 1.21136 0.95065 1.07134 0.95361 1.17966 0.82614 0.77141 0.87976 1.90731 1.71229 1.51374 1.29521 1.45948 1.05189 1.71770 1.11347 1.21604 0.93228 0.96952 0.85424 0.90384 1.21774 0.99593 0.95785 0.98807 1.22152 1.00108 0.97949 0.97786 1.20827 0.90798 0.83989 0.99902 1.44191 1.60298 1.05832 1.20705 1.19199 1.03277 1.17922 0.98271 0.91059 1.25096 0.95329 1.00298 0.98549 1.70028 1.12074 1.37442 1.34782 0.86283 0.78145 0.77756 0.84946 1.20103 1.21588 1.21804 1.20733 0.89378 0.90566 0.94202 0.94120 1.21792 1.01439 0.96223 0.99934 1.21592 0.92550 0.89638 0.98711 0.89434 0.93883 0.93904 0.91925 0.91812 0.82372 0.81702 0.75426 0.93105 0.91775 0.92929 0.93403 0.89352 0.96374 0.93668 0.92850 0.91676 0.94129 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.83 10.69 -35.23 -0.38 -4.21 16 3 C 0.11 0.92 6.08 36.01 0.22 1.14 16 4 C -0.16 -1.73 5.52 -104.53 -0.58 -2.31 16 5 C 0.14 1.57 10.85 -17.47 -0.19 1.38 16 6 N -0.48 -6.66 10.35 -12.91 -0.13 -6.79 16 7 C 0.14 2.01 10.71 -17.13 -0.18 1.83 16 8 C -0.18 -2.60 5.89 -104.82 -0.62 -3.22 16 9 C 0.56 9.17 7.75 -12.33 -0.10 9.07 16 10 O -0.55 -10.35 16.09 5.32 0.09 -10.26 16 11 N -0.69 -11.39 3.42 -54.64 -0.19 -11.57 16 12 C 0.13 2.33 2.32 -67.81 -0.16 2.17 16 13 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 14 C -0.12 -2.09 5.58 -26.69 -0.15 -2.24 16 15 C -0.14 -2.61 5.93 -26.61 -0.16 -2.77 16 16 C 0.17 3.80 5.29 -3.71 -0.02 3.78 16 17 N -0.59 -13.12 2.65 -164.77 -0.44 -13.55 16 18 C -0.26 -6.31 8.61 -15.06 -0.13 -6.44 16 19 H 0.07 1.70 6.20 -52.49 -0.33 1.37 16 20 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 21 N -0.90 -24.78 11.14 55.49 0.62 -24.17 16 22 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.16 3.04 3.20 -67.60 -0.22 2.83 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 C -0.14 -2.42 7.72 37.16 0.29 -2.13 16 29 C 0.00 0.02 9.39 -38.87 -0.37 -0.34 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.46 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.17 2.23 6.42 -52.48 -0.34 1.90 16 37 H 0.41 6.78 5.83 -40.82 -0.24 6.54 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.23 6.06 -51.92 -0.31 1.91 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 46 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.15 1.79 7.74 -52.49 -0.41 1.39 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -29.99 383.26 -8.35 -38.33 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.34 Total: 6.69 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.33 Total: 4.13 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.14 Total: -56.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.29 Total: -14.47 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.99 -8.35 -38.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.944 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds