Wall clock time and date at job start Tue Mar 31 2020 17:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00138 * 2 1 4 4 C 1.50703 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.38355 * 120.34946 * 89.99787 * 4 3 2 6 6 N 1.31923 * 121.08057 * 180.02562 * 5 4 3 7 7 C 1.31696 * 121.87516 * 359.97438 * 6 5 4 8 8 C 1.39518 * 120.57060 * 0.27899 * 7 6 5 9 9 C 1.47837 * 120.55976 * 179.70205 * 8 7 6 10 10 O 1.21549 * 120.00287 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99852 * 359.97438 * 9 8 7 12 12 C 1.46502 * 119.99924 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49647 * 35.06308 * 12 11 9 14 14 C 1.53039 * 109.49804 * 275.00118 * 12 11 9 15 15 C 1.53040 * 109.53876 * 301.41166 * 14 12 11 16 16 C 1.53198 * 109.31114 * 298.63710 * 15 14 12 17 17 N 1.46925 * 108.77783 * 54.63573 * 16 15 14 18 18 C 1.36934 * 120.63487 * 126.41368 * 17 16 15 19 19 H 1.07997 * 119.99910 * 209.00232 * 18 17 16 20 20 C 1.38808 * 120.00087 * 28.99033 * 18 17 16 21 21 N 1.31626 * 119.99877 * 15.04333 * 20 18 17 22 22 Si 1.86794 * 120.00596 * 195.03714 * 20 18 17 23 23 H 1.48504 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47534 * 120.00068 * 22 20 18 25 25 H 1.48496 * 109.47557 * 240.00798 * 22 20 18 26 26 C 1.46929 * 118.73420 * 306.39188 * 17 16 15 27 27 H 1.09005 * 109.58500 * 293.81684 * 26 17 16 28 28 C 1.53001 * 109.58412 * 173.39643 * 26 17 16 29 29 C 1.38355 * 120.34522 * 269.97122 * 4 3 2 30 30 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46943 * 300.00319 * 1 2 3 32 32 H 1.08995 * 109.46728 * 60.00570 * 1 2 3 33 33 H 1.08992 * 109.47536 * 59.99476 * 3 2 1 34 34 H 1.09005 * 109.46667 * 299.99290 * 3 2 1 35 35 H 1.07999 * 119.45865 * 359.97240 * 5 4 3 36 36 H 1.08004 * 119.71118 * 180.02562 * 7 6 5 37 37 H 0.97003 * 120.00334 * 0.02562 * 11 9 8 38 38 H 1.08998 * 109.46304 * 61.43303 * 14 12 11 39 39 H 1.09000 * 109.45774 * 181.39327 * 14 12 11 40 40 H 1.09006 * 109.49602 * 58.58573 * 15 14 12 41 41 H 1.08996 * 109.50044 * 178.68759 * 15 14 12 42 42 H 1.09008 * 109.58487 * 174.41837 * 16 15 14 43 43 H 1.08991 * 109.58581 * 294.84157 * 16 15 14 44 44 H 0.97001 * 120.00187 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.47273 * 300.70941 * 28 26 17 46 46 H 1.09006 * 109.47036 * 60.70627 * 28 26 17 47 47 H 1.09001 * 109.46880 * 180.70792 * 28 26 17 48 48 H 1.07997 * 120.85677 * 0.04522 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2100 1.1310 -1.1930 6 7 5.5250 1.0263 -1.2093 7 6 6.2319 0.9705 -0.0996 8 6 5.6034 1.0151 1.1452 9 6 6.3968 0.9458 2.3907 10 8 5.8388 0.9861 3.4698 11 7 7.7389 0.8380 2.3297 12 6 8.5251 0.7700 3.5640 13 1 7.9666 0.2198 4.3212 14 6 8.8090 2.1869 4.0676 15 6 9.5639 2.9710 2.9917 16 6 10.9022 2.2816 2.7077 17 7 10.6465 0.8765 2.3628 18 6 11.1401 0.3419 1.2027 19 1 10.6161 -0.4667 0.7150 20 6 12.3139 0.8394 0.6536 21 7 13.1061 1.6033 1.3756 22 14 12.7693 0.4247 -1.1099 23 1 11.7196 -0.4437 -1.7011 24 1 12.8782 1.6769 -1.9007 25 1 14.0716 -0.2886 -1.1303 26 6 9.8516 0.0557 3.2865 27 1 10.3979 -0.0764 4.2205 28 6 9.5763 -1.3093 2.6525 29 6 4.2090 1.1320 1.1949 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.6887 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 3.6689 1.1732 -2.1267 36 1 7.3073 0.8853 -0.1537 37 1 8.1843 0.8063 1.4686 38 1 7.8672 2.6890 4.2893 39 1 9.4149 2.1362 4.9723 40 1 8.9691 3.0009 2.0787 41 1 9.7452 3.9871 3.3419 42 1 11.3992 2.7779 1.8741 43 1 11.5340 2.3311 3.5944 44 1 13.9265 1.9507 0.9920 45 1 9.0357 -1.1725 1.7160 46 1 10.5213 -1.8158 2.4558 47 1 8.9760 -1.9120 3.3340 48 1 3.6899 1.1730 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993468280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:59 Heat of formation + Delta-G solvation = -41.502860 kcal Electronic energy + Delta-G solvation = -29464.347988 eV Core-core repulsion = 25519.239128 eV Total energy + Delta-G solvation = -3945.108860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84992 -40.68709 -39.09173 -38.64248 -35.68073 -34.26708 -34.00611 -33.56828 -32.85400 -30.96741 -28.42463 -27.92114 -26.85954 -26.48656 -25.62920 -23.82036 -23.56855 -22.38862 -21.63987 -20.34333 -19.00806 -18.34434 -17.90639 -17.64370 -17.36515 -17.07093 -16.50971 -16.37926 -16.30663 -16.05849 -15.67822 -15.37345 -15.18079 -14.83768 -14.58653 -14.47486 -14.26129 -14.18503 -13.91570 -13.55602 -13.32666 -12.96655 -12.92218 -12.86584 -12.72616 -12.42751 -12.35049 -12.30754 -12.18200 -11.89348 -11.67061 -11.38559 -11.28174 -11.03171 -10.97567 -10.70600 -10.49313 -10.47387 -10.27991 -9.93076 -8.60325 -7.80293 -5.26608 -0.45392 0.02443 1.49380 1.54037 1.61294 1.78020 2.15432 2.54914 2.61395 3.06913 3.27125 3.36400 3.59575 3.64869 3.72403 3.76435 3.85342 3.98081 4.06570 4.07116 4.21592 4.31411 4.40054 4.50531 4.54881 4.57888 4.58715 4.64678 4.66847 4.77387 4.91472 4.92468 4.95290 5.00129 5.03086 5.07947 5.13129 5.22648 5.35086 5.44095 5.46089 5.55883 5.61803 5.76351 5.82368 6.19094 6.45827 6.55691 6.75317 7.15601 7.21660 7.91072 8.43723 9.26213 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.003251 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.745709 B = 8609.767460 C = 9701.583220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.109 3.891 4 C -0.150 4.150 5 C 0.141 3.859 6 N -0.504 5.504 7 C 0.139 3.861 8 C -0.195 4.195 9 C 0.562 3.438 10 O -0.575 6.575 11 N -0.690 5.690 12 C 0.143 3.857 13 H 0.084 0.916 14 C -0.115 4.115 15 C -0.127 4.127 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.955 3.045 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.301 1.301 26 C 0.156 3.844 27 H 0.035 0.965 28 C -0.129 4.129 29 C -0.004 4.004 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.191 0.809 36 H 0.163 0.837 37 H 0.408 0.592 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.057 0.943 43 H -0.004 1.004 44 H 0.246 0.754 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.097 0.121 -2.503 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.032 3.968 4 C -0.152 4.152 5 C -0.016 4.016 6 N -0.212 5.212 7 C -0.019 4.019 8 C -0.201 4.201 9 C 0.349 3.651 10 O -0.456 6.456 11 N -0.340 5.340 12 C 0.037 3.963 13 H 0.102 0.898 14 C -0.153 4.153 15 C -0.166 4.166 16 C 0.053 3.947 17 N -0.320 5.320 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.224 1.224 25 H -0.229 1.229 26 C 0.050 3.950 27 H 0.053 0.947 28 C -0.187 4.187 29 C -0.030 4.030 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.208 0.792 36 H 0.180 0.820 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.756 -0.017 -2.593 22.903 hybrid contribution 0.774 0.237 -0.175 0.828 sum -21.982 0.220 -2.769 22.157 Atomic orbital electron populations 1.22952 0.78961 1.03826 1.01331 1.87936 1.21789 1.27974 1.95718 1.21327 0.86715 0.85298 1.03419 1.20810 0.97326 1.03713 0.93366 1.23455 0.89373 0.89783 0.98952 1.67826 1.09023 1.13583 1.30800 1.23174 1.00814 0.91082 0.86840 1.20955 0.95585 1.09151 0.94362 1.18208 0.82362 0.76132 0.88382 1.90712 1.71588 1.52682 1.30644 1.45892 1.05348 1.71886 1.10893 1.21405 0.92198 0.96767 0.85972 0.89818 1.21722 0.99626 0.95527 0.98471 1.21960 0.97851 0.98463 0.98300 1.20602 0.92231 0.84367 0.97548 1.44355 1.60331 1.06335 1.20992 1.19520 1.02456 1.16906 0.98608 0.90154 1.25732 0.95864 1.01231 1.01538 1.70175 1.12510 1.39430 1.36060 0.85379 0.77543 0.77108 0.81474 1.18619 1.22357 1.22855 1.20856 0.89636 0.91208 0.93326 0.94746 1.21716 1.01010 0.95399 1.00530 1.21741 0.92020 0.89559 0.99696 0.88977 0.93023 0.92250 0.90811 0.89089 0.79198 0.82029 0.75465 0.92505 0.91197 0.93058 0.91978 0.92502 0.98613 0.94501 0.92681 0.93244 0.91715 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.14 10.69 -148.98 -1.59 -8.73 16 3 C 0.11 1.48 6.08 71.24 0.43 1.92 16 4 C -0.15 -2.92 5.52 -19.81 -0.11 -3.03 16 5 C 0.14 2.82 10.85 84.71 0.92 3.74 16 6 N -0.50 -13.03 10.35 -194.75 -2.01 -15.04 16 7 C 0.14 3.75 10.71 85.02 0.91 4.66 16 8 C -0.20 -5.40 5.89 -19.99 -0.12 -5.52 16 9 C 0.56 17.95 7.75 86.78 0.67 18.63 16 10 O -0.57 -21.07 16.09 -3.87 -0.06 -21.13 16 11 N -0.69 -22.07 3.42 -445.05 -1.52 -23.59 16 12 C 0.14 4.80 2.32 45.07 0.10 4.90 16 13 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 14 C -0.11 -3.85 5.58 30.62 0.17 -3.67 16 15 C -0.13 -4.63 5.93 30.67 0.18 -4.45 16 16 C 0.18 8.11 5.29 86.36 0.46 8.56 16 17 N -0.60 -26.81 2.65 -675.22 -1.79 -28.59 16 18 C -0.24 -12.02 8.61 84.03 0.72 -11.30 16 19 H 0.08 3.76 6.20 -2.91 -0.02 3.74 16 20 C -0.05 -2.54 4.96 84.86 0.42 -2.12 16 21 N -0.94 -53.12 11.14 21.65 0.24 -52.88 16 22 Si 0.96 43.08 29.58 68.60 2.03 45.10 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 C 0.16 5.90 3.20 44.97 0.14 6.05 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 28 C -0.13 -4.42 7.72 71.98 0.56 -3.86 16 29 C 0.00 -0.09 9.39 22.73 0.21 0.12 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.09 0.75 8.09 -2.38 -0.02 0.73 16 35 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.16 4.32 6.42 -2.91 -0.02 4.30 16 37 H 0.41 13.27 5.83 -92.71 -0.54 12.73 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.89 7.53 -2.38 -0.02 1.87 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.96 6.06 -2.38 -0.01 2.95 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 45 H 0.05 1.85 6.38 -2.39 -0.02 1.84 16 46 H 0.05 1.84 7.66 -2.38 -0.02 1.82 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.15 3.44 7.74 -2.91 -0.02 3.42 16 Total: -1.00 -64.78 383.26 2.65 -62.13 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.43 Total: 26.62 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.93 Total: 16.11 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -5.08 Total: -120.10 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.65 Total: -29.86 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.78 2.65 -62.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.632 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds