Wall clock time and date at job start Tue Mar 31 2020 17:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 C 1.50698 * 109.47227 * 180.02562 * 3 2 1 5 5 C 1.38347 * 120.35249 * 270.02665 * 4 3 2 6 6 N 1.31925 * 121.08369 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87763 * 359.74640 * 6 5 4 8 8 C 1.39521 * 120.56584 * 0.53647 * 7 6 5 9 9 C 1.47845 * 120.56182 * 179.72738 * 8 7 6 10 10 O 1.21547 * 120.00250 * 179.72611 * 9 8 7 11 11 N 1.34777 * 119.99537 * 359.72401 * 9 8 7 12 12 C 1.46503 * 119.99616 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.49770 * 35.07314 * 12 11 9 14 14 C 1.53035 * 109.50017 * 274.99991 * 12 11 9 15 15 C 1.53041 * 109.54001 * 178.68440 * 14 12 11 16 16 C 1.53193 * 109.30945 * 61.36932 * 15 14 12 17 17 N 1.46932 * 108.77428 * 305.36377 * 16 15 14 18 18 C 1.36928 * 120.62883 * 233.58787 * 17 16 15 19 19 H 1.08001 * 119.99855 * 152.58140 * 18 17 16 20 20 C 1.38816 * 120.00302 * 332.58271 * 18 17 16 21 21 N 1.31625 * 119.99687 * 334.09603 * 20 18 17 22 22 Si 1.86795 * 120.00166 * 154.10048 * 20 18 17 23 23 H 1.48496 * 109.47183 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47092 * 300.00089 * 22 20 18 25 25 H 1.48501 * 109.47421 * 59.99658 * 22 20 18 26 26 C 1.46921 * 118.73572 * 53.86298 * 17 16 15 27 27 H 1.09001 * 109.58789 * 65.93044 * 26 17 16 28 28 C 1.53003 * 109.58308 * 186.35070 * 26 17 16 29 29 C 1.38362 * 120.34375 * 89.99952 * 4 3 2 30 30 H 1.09001 * 109.47743 * 59.99544 * 1 2 3 31 31 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47119 * 299.99383 * 1 2 3 33 33 H 1.09000 * 109.47025 * 60.00291 * 3 2 1 34 34 H 1.09006 * 109.46890 * 300.00292 * 3 2 1 35 35 H 1.08007 * 119.45434 * 359.97375 * 5 4 3 36 36 H 1.08002 * 119.71748 * 180.27089 * 7 6 5 37 37 H 0.96997 * 120.00411 * 0.02562 * 11 9 8 38 38 H 1.09006 * 109.45942 * 58.66735 * 14 12 11 39 39 H 1.08998 * 109.45256 * 298.70252 * 14 12 11 40 40 H 1.08999 * 109.49582 * 301.41532 * 15 14 12 41 41 H 1.09001 * 109.52690 * 181.33441 * 15 14 12 42 42 H 1.09000 * 109.58243 * 185.58397 * 16 15 14 43 43 H 1.08998 * 109.70395 * 65.22183 * 16 15 14 44 44 H 0.96997 * 120.00244 * 354.51952 * 21 20 18 45 45 H 1.08994 * 109.47278 * 60.00082 * 28 26 17 46 46 H 1.09006 * 109.46769 * 180.02562 * 28 26 17 47 47 H 1.08994 * 109.47175 * 299.99845 * 28 26 17 48 48 H 1.07993 * 120.85913 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2098 1.1306 1.1929 6 7 5.5248 1.0260 1.2092 7 6 6.2315 0.9652 0.0996 8 6 5.6038 1.0214 -1.1452 9 6 6.3977 0.9592 -2.3909 10 8 5.8400 1.0041 -3.4699 11 7 7.7399 0.8529 -2.3299 12 6 8.5266 0.7907 -3.5642 13 1 8.0623 1.4198 -4.3236 14 6 8.5818 -0.6552 -4.0625 15 6 9.3757 -0.7162 -5.3695 16 6 10.8085 -0.2377 -5.1146 17 7 10.7594 1.0961 -4.5001 18 6 11.4552 2.1416 -5.0456 19 1 11.1067 3.1541 -4.9051 20 6 12.6087 1.9001 -5.7793 21 7 13.3176 0.8145 -5.5527 22 14 13.1547 3.1159 -7.0881 23 1 14.4067 2.6311 -7.7226 24 1 12.0937 3.2431 -8.1192 25 1 13.3982 4.4406 -6.4626 26 6 9.9542 1.2850 -3.2858 27 1 10.3889 0.7125 -2.4664 28 6 9.9224 2.7697 -2.9175 29 6 4.2088 1.1316 -1.1950 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.6687 1.1733 2.1267 36 1 7.3064 0.8754 0.1536 37 1 8.1850 0.8168 -1.4688 38 1 7.5688 -1.0185 -4.2357 39 1 9.0681 -1.2792 -3.3127 40 1 8.9039 -0.0729 -6.1121 41 1 9.3948 -1.7424 -5.7366 42 1 11.3495 -0.1849 -6.0594 43 1 11.3136 -0.9313 -4.4424 44 1 13.0797 0.2239 -4.8210 45 1 9.4815 3.3379 -3.7365 46 1 9.3250 2.9077 -2.0162 47 1 10.9382 3.1212 -2.7370 48 1 3.6898 1.1732 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993468281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:03 Heat of formation + Delta-G solvation = -26.628180 kcal Electronic energy + Delta-G solvation = -28722.470774 eV Core-core repulsion = 24778.006928 eV Total energy + Delta-G solvation = -3944.463846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.94886 -39.49975 -38.18086 -37.71212 -34.65349 -33.37156 -32.92326 -32.29715 -31.57286 -29.08807 -27.89419 -26.42689 -25.97326 -25.12454 -24.44429 -23.01106 -21.93575 -20.94488 -20.36045 -19.46910 -17.98568 -17.34698 -16.97605 -16.88487 -16.81107 -15.92140 -15.75398 -15.38051 -15.07329 -14.65265 -14.31822 -14.00622 -13.81352 -13.63565 -13.46435 -13.46307 -13.25662 -13.17169 -12.87965 -12.57903 -12.31756 -11.92387 -11.90195 -11.37888 -11.28951 -11.12236 -10.75849 -10.43974 -10.41749 -10.29413 -10.22192 -10.16766 -10.12854 -10.03418 -9.91943 -9.61897 -9.49651 -9.21821 -8.82219 -8.36131 -6.93018 -6.08080 -3.24122 0.33826 0.79017 2.71665 3.11695 3.33665 3.49345 3.53655 3.70833 3.71731 3.96704 4.31653 4.38833 4.51622 4.56227 4.58420 4.72877 4.82721 4.90772 4.96248 5.10197 5.14444 5.22556 5.24237 5.28171 5.40683 5.53252 5.62933 5.70162 5.77271 5.80952 5.93049 6.07947 6.16153 6.22149 6.29934 6.37390 6.44893 6.55963 6.57616 6.62178 6.65839 6.86275 6.94315 7.10197 7.19482 7.48007 7.56807 8.00159 8.22687 8.55785 9.07792 9.82857 10.25303 11.20187 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.002323 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.390285 B =12050.437582 C =12300.520924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.154 4.154 5 C 0.139 3.861 6 N -0.486 5.486 7 C 0.140 3.860 8 C -0.182 4.182 9 C 0.560 3.440 10 O -0.535 6.535 11 N -0.711 5.711 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.148 3.852 17 N -0.589 5.589 18 C -0.349 4.349 19 H 0.063 0.937 20 C -0.023 4.023 21 N -0.914 5.914 22 Si 1.062 2.938 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.169 3.831 27 H 0.027 0.973 28 C -0.134 4.134 29 C 0.003 3.997 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.395 0.605 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.018 0.982 44 H 0.269 0.731 45 H 0.055 0.945 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 -0.338 13.412 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.018 4.018 6 N -0.194 5.194 7 C -0.018 4.018 8 C -0.187 4.187 9 C 0.346 3.654 10 O -0.412 6.412 11 N -0.361 5.361 12 C 0.026 3.974 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.022 3.978 17 N -0.313 5.313 18 C -0.478 4.478 19 H 0.080 0.920 20 C -0.225 4.225 21 N -0.554 5.554 22 Si 0.892 3.108 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.061 3.939 27 H 0.044 0.956 28 C -0.192 4.192 29 C -0.024 4.024 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.230 0.770 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.284 -0.187 12.216 23.679 hybrid contribution -1.629 -0.097 0.887 1.857 sum -21.913 -0.284 13.103 25.534 Atomic orbital electron populations 1.22787 0.80540 1.03116 1.00172 1.87984 1.19977 1.27075 1.95453 1.21231 0.88554 0.85464 1.01652 1.20562 0.95887 1.04922 0.94229 1.22887 0.89941 0.91386 0.97536 1.67765 1.07852 1.12914 1.30843 1.23083 1.00429 0.91489 0.86814 1.21131 0.95150 1.07209 0.95212 1.17960 0.82414 0.76967 0.88107 1.90783 1.70861 1.50026 1.29547 1.46061 1.05895 1.73475 1.10667 1.21930 0.93048 0.97279 0.85154 0.89265 1.21771 0.99679 0.96075 0.98129 1.22052 0.98835 1.00112 0.96367 1.21022 0.92606 0.85782 0.98380 1.44129 1.54360 1.07498 1.25304 1.19942 1.06021 0.88146 1.33720 0.91958 1.25817 0.92060 1.01757 1.02869 1.70785 1.36908 1.15725 1.31950 0.83564 0.75997 0.74753 0.76498 1.21162 1.22039 1.22012 1.20638 0.88361 0.94861 0.90025 0.95566 1.21794 1.01782 0.96234 0.99365 1.21646 0.92536 0.89267 0.98908 0.93786 0.89359 0.93854 0.91699 0.91784 0.82210 0.82115 0.76992 0.92839 0.92659 0.92093 0.92708 0.90020 0.96413 0.92042 0.92553 0.94345 0.91690 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.44 10.69 -35.23 -0.38 -3.82 16 3 C 0.11 0.78 6.08 36.00 0.22 1.00 16 4 C -0.15 -1.44 5.52 -104.54 -0.58 -2.02 16 5 C 0.14 1.29 10.85 -17.47 -0.19 1.10 16 6 N -0.49 -5.32 10.35 -12.91 -0.13 -5.46 16 7 C 0.14 1.51 10.71 -17.13 -0.18 1.32 16 8 C -0.18 -2.22 5.89 -104.82 -0.62 -2.84 16 9 C 0.56 8.39 7.75 -12.33 -0.10 8.29 16 10 O -0.53 -9.91 16.09 5.32 0.09 -9.83 16 11 N -0.71 -10.11 4.56 -54.42 -0.25 -10.36 16 12 C 0.13 2.32 2.02 -67.59 -0.14 2.18 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 C -0.12 -2.07 5.46 -26.69 -0.15 -2.21 16 15 C -0.13 -2.57 6.08 -26.61 -0.16 -2.73 16 16 C 0.15 3.37 4.71 -3.71 -0.02 3.35 16 17 N -0.59 -14.04 2.85 -164.52 -0.47 -14.50 16 18 C -0.35 -9.29 8.52 -15.06 -0.13 -9.42 16 19 H 0.06 1.65 6.24 -52.49 -0.33 1.33 16 20 C -0.02 -0.63 4.66 -17.43 -0.08 -0.71 16 21 N -0.91 -26.67 12.42 55.49 0.69 -25.98 16 22 Si 1.06 24.89 29.99 -169.99 -5.10 19.79 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.17 3.31 3.05 -67.37 -0.21 3.11 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 C -0.13 -2.47 7.82 37.16 0.29 -2.18 16 29 C 0.00 0.03 9.39 -38.87 -0.37 -0.33 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.16 1.37 6.42 -52.49 -0.34 1.03 16 37 H 0.40 4.53 6.67 -40.82 -0.27 4.26 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 2.10 6.31 -51.93 -0.33 1.77 16 43 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 44 H 0.27 7.89 6.77 -40.82 -0.28 7.61 16 45 H 0.06 1.11 7.46 -51.93 -0.39 0.72 16 46 H 0.04 0.58 7.82 -51.93 -0.41 0.17 16 47 H 0.06 1.29 7.60 -51.93 -0.39 0.90 16 48 H 0.15 1.66 7.74 -52.49 -0.41 1.25 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -32.76 385.63 -8.40 -41.16 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.38 Total: 4.00 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.28 Total: -0.81 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.16 Total: -56.31 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.29 Total: -13.64 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.76 -8.40 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.530 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds