Wall clock time and date at job start Tue Mar 31 2020 17:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 C 1.50698 * 109.47227 * 180.02562 * 3 2 1 5 5 C 1.38347 * 120.35249 * 270.02665 * 4 3 2 6 6 N 1.31925 * 121.08369 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87763 * 359.74640 * 6 5 4 8 8 C 1.39521 * 120.56584 * 0.53647 * 7 6 5 9 9 C 1.47845 * 120.56182 * 179.72738 * 8 7 6 10 10 O 1.21547 * 120.00250 * 179.72611 * 9 8 7 11 11 N 1.34777 * 119.99537 * 359.72401 * 9 8 7 12 12 C 1.46503 * 119.99616 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.49770 * 35.07314 * 12 11 9 14 14 C 1.53035 * 109.50017 * 274.99991 * 12 11 9 15 15 C 1.53041 * 109.54001 * 178.68440 * 14 12 11 16 16 C 1.53193 * 109.30945 * 61.36932 * 15 14 12 17 17 N 1.46932 * 108.77428 * 305.36377 * 16 15 14 18 18 C 1.36928 * 120.62883 * 233.58787 * 17 16 15 19 19 H 1.08001 * 119.99855 * 152.58140 * 18 17 16 20 20 C 1.38816 * 120.00302 * 332.58271 * 18 17 16 21 21 N 1.31625 * 119.99687 * 334.09603 * 20 18 17 22 22 Si 1.86795 * 120.00166 * 154.10048 * 20 18 17 23 23 H 1.48496 * 109.47183 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47092 * 300.00089 * 22 20 18 25 25 H 1.48501 * 109.47421 * 59.99658 * 22 20 18 26 26 C 1.46921 * 118.73572 * 53.86298 * 17 16 15 27 27 H 1.09001 * 109.58789 * 65.93044 * 26 17 16 28 28 C 1.53003 * 109.58308 * 186.35070 * 26 17 16 29 29 C 1.38362 * 120.34375 * 89.99952 * 4 3 2 30 30 H 1.09001 * 109.47743 * 59.99544 * 1 2 3 31 31 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47119 * 299.99383 * 1 2 3 33 33 H 1.09000 * 109.47025 * 60.00291 * 3 2 1 34 34 H 1.09006 * 109.46890 * 300.00292 * 3 2 1 35 35 H 1.08007 * 119.45434 * 359.97375 * 5 4 3 36 36 H 1.08002 * 119.71748 * 180.27089 * 7 6 5 37 37 H 0.96997 * 120.00411 * 0.02562 * 11 9 8 38 38 H 1.09006 * 109.45942 * 58.66735 * 14 12 11 39 39 H 1.08998 * 109.45256 * 298.70252 * 14 12 11 40 40 H 1.08999 * 109.49582 * 301.41532 * 15 14 12 41 41 H 1.09001 * 109.52690 * 181.33441 * 15 14 12 42 42 H 1.09000 * 109.58243 * 185.58397 * 16 15 14 43 43 H 1.08998 * 109.70395 * 65.22183 * 16 15 14 44 44 H 0.96997 * 120.00244 * 354.51952 * 21 20 18 45 45 H 1.08994 * 109.47278 * 60.00082 * 28 26 17 46 46 H 1.09006 * 109.46769 * 180.02562 * 28 26 17 47 47 H 1.08994 * 109.47175 * 299.99845 * 28 26 17 48 48 H 1.07993 * 120.85913 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2098 1.1306 1.1929 6 7 5.5248 1.0260 1.2092 7 6 6.2315 0.9652 0.0996 8 6 5.6038 1.0214 -1.1452 9 6 6.3977 0.9592 -2.3909 10 8 5.8400 1.0041 -3.4699 11 7 7.7399 0.8529 -2.3299 12 6 8.5266 0.7907 -3.5642 13 1 8.0623 1.4198 -4.3236 14 6 8.5818 -0.6552 -4.0625 15 6 9.3757 -0.7162 -5.3695 16 6 10.8085 -0.2377 -5.1146 17 7 10.7594 1.0961 -4.5001 18 6 11.4552 2.1416 -5.0456 19 1 11.1067 3.1541 -4.9051 20 6 12.6087 1.9001 -5.7793 21 7 13.3176 0.8145 -5.5527 22 14 13.1547 3.1159 -7.0881 23 1 14.4067 2.6311 -7.7226 24 1 12.0937 3.2431 -8.1192 25 1 13.3982 4.4406 -6.4626 26 6 9.9542 1.2850 -3.2858 27 1 10.3889 0.7125 -2.4664 28 6 9.9224 2.7697 -2.9175 29 6 4.2088 1.1316 -1.1950 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.6687 1.1733 2.1267 36 1 7.3064 0.8754 0.1536 37 1 8.1850 0.8168 -1.4688 38 1 7.5688 -1.0185 -4.2357 39 1 9.0681 -1.2792 -3.3127 40 1 8.9039 -0.0729 -6.1121 41 1 9.3948 -1.7424 -5.7366 42 1 11.3495 -0.1849 -6.0594 43 1 11.3136 -0.9313 -4.4424 44 1 13.0797 0.2239 -4.8210 45 1 9.4815 3.3379 -3.7365 46 1 9.3250 2.9077 -2.0162 47 1 10.9382 3.1212 -2.7370 48 1 3.6898 1.1732 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993468281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:02 Heat of formation + Delta-G solvation = -48.419021 kcal Electronic energy + Delta-G solvation = -28723.415696 eV Core-core repulsion = 24778.006928 eV Total energy + Delta-G solvation = -3945.408767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88669 -40.69192 -39.31334 -38.68519 -36.20715 -34.52328 -34.08488 -33.67006 -32.95079 -30.73018 -28.46481 -27.99171 -26.86707 -26.51436 -25.63608 -23.86187 -23.43834 -22.56552 -21.56477 -21.07843 -19.15395 -18.79539 -18.12188 -17.71745 -17.39510 -17.03023 -16.51026 -16.45018 -16.24643 -16.07557 -15.86971 -15.47408 -15.26304 -15.09640 -14.96845 -14.56346 -14.30020 -14.23200 -13.96083 -13.52974 -13.35585 -13.06043 -12.98651 -12.92013 -12.76928 -12.56749 -12.38224 -12.06676 -11.94787 -11.92562 -11.82827 -11.72901 -11.41205 -11.06702 -11.02228 -10.74027 -10.53079 -10.46097 -10.32410 -10.07022 -8.91346 -8.20150 -5.33920 -0.49732 -0.01027 1.59150 1.66179 1.70119 1.84325 1.93128 2.57120 2.67783 3.03252 3.21705 3.23705 3.46339 3.60124 3.68492 3.73052 3.79002 3.82414 3.92042 4.00465 4.07213 4.22182 4.29018 4.36560 4.47794 4.50229 4.52549 4.56139 4.61651 4.65444 4.70589 4.82333 4.88118 4.89521 4.92053 5.00585 5.02958 5.08964 5.15804 5.26589 5.30720 5.36540 5.41391 5.53284 5.93257 6.15851 6.40399 6.44545 6.70957 7.04438 7.10147 7.81269 8.24408 9.05766 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.002323 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.390285 B =12050.437582 C =12300.520924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.107 3.893 4 C -0.151 4.151 5 C 0.145 3.855 6 N -0.501 5.501 7 C 0.144 3.856 8 C -0.197 4.197 9 C 0.564 3.436 10 O -0.576 6.576 11 N -0.700 5.700 12 C 0.148 3.852 13 H 0.060 0.940 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.153 3.847 17 N -0.607 5.607 18 C -0.345 4.345 19 H 0.060 0.940 20 C -0.076 4.076 21 N -0.942 5.942 22 Si 1.107 2.893 23 H -0.294 1.294 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.165 3.835 27 H 0.038 0.962 28 C -0.126 4.126 29 C -0.007 4.007 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.255 0.745 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.642 0.043 15.639 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.030 3.970 4 C -0.153 4.153 5 C -0.011 4.011 6 N -0.208 5.208 7 C -0.014 4.014 8 C -0.202 4.202 9 C 0.351 3.649 10 O -0.456 6.456 11 N -0.351 5.351 12 C 0.042 3.958 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.164 4.164 16 C 0.028 3.972 17 N -0.332 5.332 18 C -0.474 4.474 19 H 0.077 0.923 20 C -0.272 4.272 21 N -0.584 5.584 22 Si 0.933 3.067 23 H -0.220 1.220 24 H -0.212 1.212 25 H -0.202 1.202 26 C 0.059 3.941 27 H 0.055 0.945 28 C -0.183 4.183 29 C -0.034 4.034 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.198 0.802 37 H 0.249 0.751 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.327 0.202 14.497 26.621 hybrid contribution -1.140 -0.222 0.296 1.199 sum -23.467 -0.021 14.794 27.741 Atomic orbital electron populations 1.22953 0.78964 1.03849 1.01323 1.87929 1.21788 1.28006 1.95717 1.21350 0.86998 0.85291 1.03360 1.20789 0.97218 1.03873 0.93448 1.23442 0.89587 0.89407 0.98714 1.67859 1.08743 1.13583 1.30647 1.23331 1.01379 0.90540 0.86114 1.20885 0.95254 1.09747 0.94308 1.18329 0.82313 0.75665 0.88548 1.90763 1.71579 1.51932 1.31343 1.45801 1.05713 1.73330 1.10236 1.21420 0.91794 0.96742 0.85866 0.92219 1.21701 0.99623 0.96143 0.97454 1.21916 0.96424 1.00884 0.97149 1.20879 0.94268 0.85586 0.96501 1.44350 1.54595 1.07218 1.27046 1.20140 1.05485 0.88838 1.32955 0.92270 1.26985 0.92696 1.02764 1.04768 1.70892 1.38207 1.16903 1.32444 0.82938 0.75354 0.73753 0.74654 1.22025 1.21192 1.20168 1.20813 0.88683 0.95967 0.88675 0.94456 1.21705 1.01214 0.94982 1.00405 1.21750 0.92453 0.89569 0.99604 0.93200 0.88953 0.92114 0.88911 0.91185 0.79119 0.80213 0.75050 0.92392 0.91162 0.93560 0.90459 0.93517 0.96876 0.93479 0.94251 0.90556 0.93440 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.53 10.69 -148.98 -1.59 -8.12 16 3 C 0.11 1.27 6.08 71.24 0.43 1.70 16 4 C -0.15 -2.50 5.52 -19.81 -0.11 -2.61 16 5 C 0.15 2.24 10.85 84.70 0.92 3.16 16 6 N -0.50 -9.57 10.35 -194.75 -2.01 -11.59 16 7 C 0.14 2.76 10.71 85.02 0.91 3.68 16 8 C -0.20 -4.53 5.89 -19.99 -0.12 -4.65 16 9 C 0.56 16.40 7.75 86.79 0.67 17.07 16 10 O -0.58 -21.44 16.09 -3.86 -0.06 -21.50 16 11 N -0.70 -18.82 4.56 -444.35 -2.02 -20.84 16 12 C 0.15 5.14 2.02 45.21 0.09 5.23 16 13 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 14 C -0.11 -3.76 5.46 30.62 0.17 -3.59 16 15 C -0.12 -4.75 6.08 30.67 0.19 -4.57 16 16 C 0.15 7.13 4.71 86.36 0.41 7.54 16 17 N -0.61 -29.34 2.85 -674.41 -1.92 -31.26 16 18 C -0.34 -18.61 8.52 84.04 0.72 -17.89 16 19 H 0.06 3.18 6.24 -2.91 -0.02 3.17 16 20 C -0.08 -4.23 4.66 84.86 0.40 -3.84 16 21 N -0.94 -56.51 12.42 21.65 0.27 -56.24 16 22 Si 1.11 51.01 29.99 68.60 2.06 53.07 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.17 6.38 3.05 45.12 0.14 6.52 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 C -0.13 -4.53 7.82 71.98 0.56 -3.96 16 29 C -0.01 -0.16 9.39 22.73 0.21 0.06 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 34 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 35 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.18 2.54 6.42 -2.91 -0.02 2.52 16 37 H 0.41 8.38 6.67 -92.71 -0.62 7.77 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.05 2.49 6.31 -2.39 -0.02 2.47 16 43 H 0.01 0.62 7.88 -2.39 -0.02 0.60 16 44 H 0.26 15.50 6.77 -92.71 -0.63 14.88 16 45 H 0.04 1.53 7.46 -2.39 -0.02 1.51 16 46 H 0.08 2.13 7.82 -2.38 -0.02 2.11 16 47 H 0.05 1.86 7.60 -2.39 -0.02 1.84 16 48 H 0.14 3.15 7.74 -2.91 -0.02 3.13 16 Total: -1.00 -72.78 385.63 2.04 -70.74 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.49 Total: 20.44 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.83 Total: 5.31 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.69 Total: -119.93 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.65 Total: -29.62 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.07 kcal Total: -72.78 2.04 -70.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds