Wall clock time and date at job start Tue Mar 31 2020 17:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 C 1.50701 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.38350 * 120.35184 * 269.98381 * 4 3 2 6 6 N 1.31929 * 121.08259 * 179.97438 * 5 4 3 7 7 C 1.31687 * 121.87807 * 0.02562 * 6 5 4 8 8 C 1.39528 * 120.56861 * 359.71697 * 7 6 5 9 9 C 1.47837 * 120.56174 * 180.31106 * 8 7 6 10 10 O 1.21555 * 120.00097 * 180.22878 * 9 8 7 11 11 N 1.34785 * 119.99876 * 0.22292 * 9 8 7 12 12 C 1.46496 * 119.99831 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.50163 * 325.07114 * 12 11 9 14 14 C 1.53038 * 109.49658 * 85.16637 * 12 11 9 15 15 C 1.53041 * 109.53638 * 58.58322 * 14 12 11 16 16 C 1.53191 * 109.31067 * 61.36975 * 15 14 12 17 17 N 1.46928 * 108.77546 * 305.36056 * 16 15 14 18 18 C 1.36927 * 120.63177 * 233.63320 * 17 16 15 19 19 H 1.07999 * 120.00023 * 150.14919 * 18 17 16 20 20 C 1.38812 * 120.00482 * 330.14651 * 18 17 16 21 21 N 1.31619 * 119.99741 * 344.50055 * 20 18 17 22 22 Si 1.86794 * 120.00454 * 164.50301 * 20 18 17 23 23 H 1.48498 * 109.47550 * 59.99903 * 22 20 18 24 24 H 1.48504 * 109.47384 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46858 * 299.99817 * 22 20 18 26 26 C 1.46930 * 118.73495 * 53.61256 * 17 16 15 27 27 H 1.08998 * 109.59003 * 66.17873 * 26 17 16 28 28 C 1.53002 * 109.58358 * 186.60739 * 26 17 16 29 29 C 1.38361 * 120.34535 * 89.99959 * 4 3 2 30 30 H 1.09003 * 109.47243 * 299.99914 * 1 2 3 31 31 H 1.08993 * 109.47756 * 59.99713 * 1 2 3 32 32 H 1.09004 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47441 * 60.00250 * 3 2 1 34 34 H 1.09007 * 109.47515 * 300.00213 * 3 2 1 35 35 H 1.08003 * 119.45702 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.71882 * 180.02562 * 7 6 5 37 37 H 0.96994 * 119.99850 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46345 * 178.60645 * 14 12 11 39 39 H 1.09004 * 109.46348 * 298.56314 * 14 12 11 40 40 H 1.08991 * 109.50073 * 301.41635 * 15 14 12 41 41 H 1.09006 * 109.52140 * 181.33112 * 15 14 12 42 42 H 1.08997 * 109.58518 * 185.57839 * 16 15 14 43 43 H 1.09001 * 109.71093 * 65.21909 * 16 15 14 44 44 H 0.96999 * 120.00146 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.46928 * 179.28705 * 28 26 17 46 46 H 1.08998 * 109.47043 * 299.28493 * 28 26 17 47 47 H 1.08998 * 109.47367 * 59.28909 * 28 26 17 48 48 H 1.07996 * 120.86067 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2099 1.1315 1.1929 6 7 5.5249 1.0269 1.2092 7 6 6.2319 0.9708 0.0996 8 6 5.6033 1.0150 -1.1453 9 6 6.3966 0.9451 -2.3908 10 8 5.8388 0.9886 -3.4699 11 7 7.7384 0.8332 -2.3298 12 6 8.5244 0.7633 -3.5641 13 1 7.9633 0.2173 -4.3224 14 6 8.8161 2.1798 -4.0647 15 6 9.5750 2.9574 -2.9870 16 6 10.9094 2.2603 -2.7043 17 7 10.6461 0.8558 -2.3623 18 6 11.1358 0.3164 -1.2029 19 1 10.5999 -0.4811 -0.7099 20 6 12.3211 0.7946 -0.6612 21 7 13.1276 1.5342 -1.3926 22 14 12.7715 0.3884 1.1055 23 1 12.8731 -1.0845 1.2644 24 1 14.0761 1.0140 1.4401 25 1 11.7231 0.9135 2.0168 26 6 9.8470 0.0413 -3.2879 27 1 10.3927 -0.0918 -4.2220 28 6 9.5641 -1.3235 -2.6568 29 6 4.2088 1.1316 -1.1950 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.6688 1.1741 2.1267 36 1 7.3071 0.8849 0.1536 37 1 8.1835 0.7982 -1.4687 38 1 9.4219 2.1277 -4.9694 39 1 7.8771 2.6875 -4.2855 40 1 8.9803 2.9887 -2.0741 41 1 9.7618 3.9736 -3.3345 42 1 11.4089 2.7520 -1.8696 43 1 11.5439 2.3081 -3.5893 44 1 13.9557 1.8687 -1.0140 45 1 8.9606 -1.9215 -3.3396 46 1 10.5062 -1.8356 -2.4611 47 1 9.0240 -1.1858 -1.7201 48 1 3.6898 1.1724 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993468285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:06 Heat of formation + Delta-G solvation = -23.674069 kcal Electronic energy + Delta-G solvation = -29460.358269 eV Core-core repulsion = 25516.022523 eV Total energy + Delta-G solvation = -3944.335746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75911 -39.41711 -38.06695 -37.50467 -34.07950 -33.18380 -32.69339 -32.11081 -31.43382 -29.37196 -27.76533 -26.37675 -25.83980 -25.08592 -24.47477 -22.82037 -21.99403 -20.86279 -20.31317 -18.82939 -17.86867 -17.05581 -16.78538 -16.69481 -16.39627 -15.76343 -15.46402 -15.29865 -14.96433 -14.78370 -14.06214 -13.99077 -13.84025 -13.33191 -13.30092 -13.25258 -13.05400 -12.91835 -12.76419 -12.57870 -12.16119 -11.88367 -11.79613 -11.30295 -11.26308 -10.98480 -10.72428 -10.65378 -10.55503 -10.17021 -10.12357 -10.05888 -10.04999 -9.96790 -9.69717 -9.41666 -9.34607 -9.28169 -8.60066 -8.48489 -6.70449 -5.84040 -3.30110 0.54830 0.98546 2.91852 3.35359 3.39438 3.41576 3.42864 3.50758 3.90794 4.20856 4.43530 4.47589 4.56088 4.72919 4.74860 4.89193 4.97556 5.04060 5.06413 5.26032 5.29910 5.31352 5.34410 5.42110 5.53838 5.58508 5.71162 5.89972 5.92146 5.96653 6.08916 6.19479 6.28967 6.37980 6.39275 6.49702 6.62276 6.64476 6.72929 6.74554 6.90606 6.93331 7.04610 7.34615 7.63080 7.71441 7.75220 7.89370 8.39109 8.47299 9.15194 9.77985 10.35344 11.23866 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003248 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.800452 B = 8617.492333 C = 9708.440983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.109 3.891 4 C -0.158 4.158 5 C 0.138 3.862 6 N -0.485 5.485 7 C 0.144 3.856 8 C -0.182 4.182 9 C 0.558 3.442 10 O -0.549 6.549 11 N -0.692 5.692 12 C 0.134 3.866 13 H 0.078 0.922 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.171 3.829 17 N -0.586 5.586 18 C -0.260 4.260 19 H 0.070 0.930 20 C 0.009 3.991 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.159 3.841 27 H 0.041 0.959 28 C -0.136 4.136 29 C 0.002 3.998 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.019 0.981 44 H 0.254 0.746 45 H 0.040 0.960 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 0.589 1.650 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.033 3.967 4 C -0.160 4.160 5 C -0.019 4.019 6 N -0.192 5.192 7 C -0.014 4.014 8 C -0.187 4.187 9 C 0.343 3.657 10 O -0.429 6.429 11 N -0.343 5.343 12 C 0.028 3.972 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.180 4.180 16 C 0.046 3.954 17 N -0.310 5.310 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.191 4.191 21 N -0.542 5.542 22 Si 0.729 3.271 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.051 3.949 27 H 0.059 0.941 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.754 0.476 1.732 19.835 hybrid contribution -0.027 0.156 0.482 0.507 sum -19.780 0.632 2.214 19.914 Atomic orbital electron populations 1.22773 0.80714 1.03024 1.00088 1.87991 1.19821 1.27190 1.95430 1.21214 0.88710 0.85340 1.01477 1.20527 0.95696 1.05488 0.94313 1.22889 0.90057 0.91497 0.97439 1.67795 1.07697 1.12749 1.30975 1.23233 1.00768 0.90647 0.86745 1.21139 0.95064 1.07137 0.95359 1.17970 0.82610 0.77144 0.87975 1.90733 1.71224 1.51379 1.29521 1.45946 1.05222 1.71735 1.11347 1.21606 0.93242 0.96942 0.85431 0.90379 1.21772 0.99571 0.95795 0.98801 1.22144 1.00059 0.97968 0.97802 1.20792 0.90833 0.83960 0.99841 1.44158 1.60177 1.05934 1.20685 1.19092 1.02511 1.18948 0.98402 0.91232 1.25106 0.95223 1.00311 0.98460 1.70013 1.11032 1.38424 1.34748 0.86434 0.77494 0.78097 0.85103 1.20872 1.21740 1.20825 1.20735 0.89358 0.90583 0.94193 0.94127 1.21786 1.01412 0.96246 0.99916 1.21594 0.92551 0.89635 0.98710 0.93914 0.93878 0.89433 0.91812 0.91925 0.82372 0.81703 0.75428 0.91766 0.93103 0.92915 0.93397 0.89636 0.96310 0.93554 0.94148 0.91667 0.92869 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.83 10.69 -35.23 -0.38 -4.21 16 3 C 0.11 0.92 6.08 36.01 0.22 1.14 16 4 C -0.16 -1.73 5.52 -104.54 -0.58 -2.31 16 5 C 0.14 1.57 10.85 -17.47 -0.19 1.38 16 6 N -0.48 -6.67 10.35 -12.91 -0.13 -6.80 16 7 C 0.14 2.02 10.71 -17.13 -0.18 1.83 16 8 C -0.18 -2.61 5.89 -104.82 -0.62 -3.22 16 9 C 0.56 9.17 7.75 -12.33 -0.10 9.07 16 10 O -0.55 -10.35 16.08 5.32 0.09 -10.26 16 11 N -0.69 -11.39 3.42 -54.64 -0.19 -11.58 16 12 C 0.13 2.33 2.33 -67.81 -0.16 2.17 16 13 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 14 C -0.12 -2.09 5.58 -26.69 -0.15 -2.24 16 15 C -0.14 -2.60 5.93 -26.61 -0.16 -2.76 16 16 C 0.17 3.82 5.28 -3.71 -0.02 3.80 16 17 N -0.59 -13.11 2.64 -164.77 -0.44 -13.55 16 18 C -0.26 -6.39 8.58 -15.06 -0.13 -6.52 16 19 H 0.07 1.65 6.23 -52.49 -0.33 1.33 16 20 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 21 N -0.90 -24.79 11.23 55.49 0.62 -24.16 16 22 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.16 3.05 3.20 -67.60 -0.22 2.83 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 C -0.14 -2.42 7.72 37.16 0.29 -2.13 16 29 C 0.00 0.02 9.39 -38.87 -0.37 -0.34 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.06 0.46 8.09 -51.93 -0.42 0.03 16 35 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.17 2.24 6.42 -52.48 -0.34 1.90 16 37 H 0.41 6.79 5.84 -40.82 -0.24 6.55 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.15 6.15 -51.93 -0.32 1.83 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 47 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 48 H 0.15 1.79 7.74 -52.49 -0.41 1.39 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -29.96 383.42 -8.34 -38.31 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.34 Total: 6.71 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.33 Total: 4.14 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.13 Total: -56.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.29 Total: -14.48 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.96 -8.34 -38.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.632 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds