Wall clock time and date at job start Tue Mar 31 2020 17:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 C 1.50701 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.38350 * 120.35184 * 269.98381 * 4 3 2 6 6 N 1.31929 * 121.08259 * 179.97438 * 5 4 3 7 7 C 1.31687 * 121.87807 * 0.02562 * 6 5 4 8 8 C 1.39528 * 120.56861 * 359.71697 * 7 6 5 9 9 C 1.47837 * 120.56174 * 180.31106 * 8 7 6 10 10 O 1.21555 * 120.00097 * 180.22878 * 9 8 7 11 11 N 1.34785 * 119.99876 * 0.22292 * 9 8 7 12 12 C 1.46496 * 119.99831 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.50163 * 325.07114 * 12 11 9 14 14 C 1.53038 * 109.49658 * 85.16637 * 12 11 9 15 15 C 1.53041 * 109.53638 * 58.58322 * 14 12 11 16 16 C 1.53191 * 109.31067 * 61.36975 * 15 14 12 17 17 N 1.46928 * 108.77546 * 305.36056 * 16 15 14 18 18 C 1.36927 * 120.63177 * 233.63320 * 17 16 15 19 19 H 1.07999 * 120.00023 * 150.14919 * 18 17 16 20 20 C 1.38812 * 120.00482 * 330.14651 * 18 17 16 21 21 N 1.31619 * 119.99741 * 344.50055 * 20 18 17 22 22 Si 1.86794 * 120.00454 * 164.50301 * 20 18 17 23 23 H 1.48498 * 109.47550 * 59.99903 * 22 20 18 24 24 H 1.48504 * 109.47384 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46858 * 299.99817 * 22 20 18 26 26 C 1.46930 * 118.73495 * 53.61256 * 17 16 15 27 27 H 1.08998 * 109.59003 * 66.17873 * 26 17 16 28 28 C 1.53002 * 109.58358 * 186.60739 * 26 17 16 29 29 C 1.38361 * 120.34535 * 89.99959 * 4 3 2 30 30 H 1.09003 * 109.47243 * 299.99914 * 1 2 3 31 31 H 1.08993 * 109.47756 * 59.99713 * 1 2 3 32 32 H 1.09004 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47441 * 60.00250 * 3 2 1 34 34 H 1.09007 * 109.47515 * 300.00213 * 3 2 1 35 35 H 1.08003 * 119.45702 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.71882 * 180.02562 * 7 6 5 37 37 H 0.96994 * 119.99850 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46345 * 178.60645 * 14 12 11 39 39 H 1.09004 * 109.46348 * 298.56314 * 14 12 11 40 40 H 1.08991 * 109.50073 * 301.41635 * 15 14 12 41 41 H 1.09006 * 109.52140 * 181.33112 * 15 14 12 42 42 H 1.08997 * 109.58518 * 185.57839 * 16 15 14 43 43 H 1.09001 * 109.71093 * 65.21909 * 16 15 14 44 44 H 0.96999 * 120.00146 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.46928 * 179.28705 * 28 26 17 46 46 H 1.08998 * 109.47043 * 299.28493 * 28 26 17 47 47 H 1.08998 * 109.47367 * 59.28909 * 28 26 17 48 48 H 1.07996 * 120.86067 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2099 1.1315 1.1929 6 7 5.5249 1.0269 1.2092 7 6 6.2319 0.9708 0.0996 8 6 5.6033 1.0150 -1.1453 9 6 6.3966 0.9451 -2.3908 10 8 5.8388 0.9886 -3.4699 11 7 7.7384 0.8332 -2.3298 12 6 8.5244 0.7633 -3.5641 13 1 7.9633 0.2173 -4.3224 14 6 8.8161 2.1798 -4.0647 15 6 9.5750 2.9574 -2.9870 16 6 10.9094 2.2603 -2.7043 17 7 10.6461 0.8558 -2.3623 18 6 11.1358 0.3164 -1.2029 19 1 10.5999 -0.4811 -0.7099 20 6 12.3211 0.7946 -0.6612 21 7 13.1276 1.5342 -1.3926 22 14 12.7715 0.3884 1.1055 23 1 12.8731 -1.0845 1.2644 24 1 14.0761 1.0140 1.4401 25 1 11.7231 0.9135 2.0168 26 6 9.8470 0.0413 -3.2879 27 1 10.3927 -0.0918 -4.2220 28 6 9.5641 -1.3235 -2.6568 29 6 4.2088 1.1316 -1.1950 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.6688 1.1741 2.1267 36 1 7.3071 0.8849 0.1536 37 1 8.1835 0.7982 -1.4687 38 1 9.4219 2.1277 -4.9694 39 1 7.8771 2.6875 -4.2855 40 1 8.9803 2.9887 -2.0741 41 1 9.7618 3.9736 -3.3345 42 1 11.4089 2.7520 -1.8696 43 1 11.5439 2.3081 -3.5893 44 1 13.9557 1.8687 -1.0140 45 1 8.9606 -1.9215 -3.3396 46 1 10.5062 -1.8356 -2.4611 47 1 9.0240 -1.1858 -1.7201 48 1 3.6898 1.1724 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993468285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:05 Heat of formation + Delta-G solvation = -41.762384 kcal Electronic energy + Delta-G solvation = -29461.142637 eV Core-core repulsion = 25516.022523 eV Total energy + Delta-G solvation = -3945.120114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84970 -40.68623 -39.08933 -38.64303 -35.67498 -34.26879 -34.00723 -33.56367 -32.85628 -30.97436 -28.42472 -27.91980 -26.85063 -26.48683 -25.63033 -23.82138 -23.57136 -22.38867 -21.64000 -20.34375 -19.00857 -18.34009 -17.90537 -17.64403 -17.36577 -17.05905 -16.51054 -16.38183 -16.30550 -16.06028 -15.68978 -15.37674 -15.17959 -14.83504 -14.58568 -14.47642 -14.25774 -14.18327 -13.91640 -13.55614 -13.32705 -12.96925 -12.91202 -12.84066 -12.69022 -12.44371 -12.35363 -12.34591 -12.17984 -11.94144 -11.67120 -11.38890 -11.28058 -11.03122 -10.97632 -10.70603 -10.47913 -10.46857 -10.28085 -9.93138 -8.59179 -7.80478 -5.27133 -0.45511 0.02366 1.51813 1.54243 1.58686 1.77942 2.15375 2.55228 2.61313 3.06881 3.27027 3.36148 3.59727 3.64777 3.72303 3.76350 3.85269 3.98064 4.06543 4.07152 4.21431 4.31326 4.40019 4.50478 4.54850 4.57883 4.58687 4.64641 4.66937 4.77097 4.91463 4.92394 4.95270 4.99985 5.02942 5.07861 5.13104 5.22550 5.35116 5.44041 5.46174 5.55520 5.61017 5.76155 5.81424 6.19113 6.45862 6.55633 6.75254 7.15524 7.21756 7.91050 8.44412 9.25928 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003248 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.800452 B = 8617.492333 C = 9708.440983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.109 3.891 4 C -0.150 4.150 5 C 0.141 3.859 6 N -0.505 5.505 7 C 0.139 3.861 8 C -0.195 4.195 9 C 0.562 3.438 10 O -0.575 6.575 11 N -0.690 5.690 12 C 0.143 3.857 13 H 0.084 0.916 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.179 3.821 17 N -0.596 5.596 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.046 4.046 21 N -0.934 5.934 22 Si 0.955 3.045 23 H -0.278 1.278 24 H -0.303 1.303 25 H -0.276 1.276 26 C 0.156 3.844 27 H 0.035 0.965 28 C -0.129 4.129 29 C -0.004 4.004 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.191 0.809 36 H 0.162 0.838 37 H 0.408 0.592 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.054 0.946 43 H -0.004 1.004 44 H 0.246 0.754 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.055 0.344 2.546 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.032 3.968 4 C -0.152 4.152 5 C -0.016 4.016 6 N -0.212 5.212 7 C -0.019 4.019 8 C -0.200 4.200 9 C 0.349 3.651 10 O -0.456 6.456 11 N -0.340 5.340 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.153 4.153 15 C -0.166 4.166 16 C 0.053 3.947 17 N -0.320 5.320 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.242 4.242 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.204 1.204 24 H -0.230 1.230 25 H -0.202 1.202 26 C 0.050 3.950 27 H 0.052 0.948 28 C -0.186 4.186 29 C -0.030 4.030 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.208 0.792 36 H 0.179 0.821 37 H 0.245 0.755 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.014 0.986 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.694 0.214 2.632 22.847 hybrid contribution 0.750 0.203 0.188 0.800 sum -21.944 0.417 2.820 22.128 Atomic orbital electron populations 1.22950 0.78962 1.03827 1.01332 1.87935 1.21789 1.27971 1.95716 1.21329 0.86710 0.85299 1.03424 1.20810 0.97329 1.03705 0.93362 1.23455 0.89365 0.89789 0.98958 1.67822 1.09029 1.13585 1.30810 1.23171 1.00800 0.91094 0.86847 1.20958 0.95587 1.09148 0.94354 1.18211 0.82354 0.76136 0.88381 1.90713 1.71580 1.52687 1.30640 1.45890 1.05384 1.71852 1.10891 1.21406 0.92203 0.96765 0.85977 0.89817 1.21721 0.99613 0.95528 0.98469 1.21954 0.97810 0.98476 0.98311 1.20573 0.92254 0.84336 0.97488 1.44322 1.60221 1.06441 1.20972 1.19425 1.01767 1.17938 0.98772 0.90309 1.25747 0.95705 1.01226 1.01484 1.70165 1.11396 1.40460 1.36009 0.85524 0.76583 0.77775 0.81643 1.20421 1.22995 1.20201 1.20855 0.89622 0.91237 0.93298 0.94788 1.21708 1.00949 0.95421 1.00535 1.21743 0.92014 0.89551 0.99699 0.92261 0.93014 0.88976 0.89089 0.90802 0.79198 0.82059 0.75474 0.91185 0.92483 0.93050 0.91934 0.92770 0.98555 0.94465 0.91737 0.93314 0.92671 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.14 10.69 -148.98 -1.59 -8.73 16 3 C 0.11 1.49 6.08 71.24 0.43 1.92 16 4 C -0.15 -2.92 5.52 -19.81 -0.11 -3.03 16 5 C 0.14 2.82 10.85 84.70 0.92 3.74 16 6 N -0.50 -13.07 10.35 -194.75 -2.01 -15.08 16 7 C 0.14 3.76 10.71 85.03 0.91 4.67 16 8 C -0.20 -5.41 5.89 -19.99 -0.12 -5.52 16 9 C 0.56 17.97 7.75 86.78 0.67 18.64 16 10 O -0.57 -21.08 16.08 -3.89 -0.06 -21.14 16 11 N -0.69 -22.10 3.42 -445.04 -1.52 -23.62 16 12 C 0.14 4.80 2.33 45.07 0.10 4.91 16 13 H 0.08 2.79 7.58 -2.39 -0.02 2.77 16 14 C -0.11 -3.84 5.58 30.62 0.17 -3.67 16 15 C -0.13 -4.62 5.93 30.67 0.18 -4.44 16 16 C 0.18 8.15 5.28 86.36 0.46 8.60 16 17 N -0.60 -26.83 2.64 -675.23 -1.78 -28.62 16 18 C -0.25 -12.26 8.58 84.04 0.72 -11.54 16 19 H 0.08 3.69 6.23 -2.91 -0.02 3.67 16 20 C -0.05 -2.42 4.94 84.86 0.42 -2.00 16 21 N -0.93 -53.11 11.23 21.65 0.24 -52.86 16 22 Si 0.96 43.04 29.58 68.60 2.03 45.07 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.16 5.93 3.20 44.97 0.14 6.07 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 C -0.13 -4.43 7.72 71.98 0.56 -3.87 16 29 C 0.00 -0.09 9.39 22.73 0.21 0.13 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.07 0.84 8.09 -2.38 -0.02 0.83 16 35 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.16 4.34 6.42 -2.91 -0.02 4.32 16 37 H 0.41 13.30 5.84 -92.71 -0.54 12.76 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.05 2.81 6.15 -2.39 -0.01 2.80 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.25 13.84 8.31 -92.71 -0.77 13.06 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 47 H 0.05 1.86 6.37 -2.39 -0.02 1.85 16 48 H 0.15 3.44 7.74 -2.91 -0.02 3.42 16 Total: -1.00 -64.72 383.42 2.65 -62.07 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.43 Total: 26.81 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.92 Total: 16.11 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -5.08 Total: -120.18 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.65 Total: -29.87 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -64.72 2.65 -62.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993468285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.311 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds