Wall clock time and date at job start Tue Mar 31 2020 17:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35737 * 117.00002 * 2 1 4 4 C 1.39287 * 120.84644 * 0.02875 * 3 2 1 5 5 C 1.37952 * 119.09208 * 179.97438 * 4 3 2 6 6 N 1.31975 * 120.82660 * 359.97317 * 5 4 3 7 7 C 1.31949 * 121.86066 * 359.75055 * 6 5 4 8 8 C 1.37995 * 120.82203 * 0.54372 * 7 6 5 9 9 C 1.50697 * 120.45730 * 179.72799 * 8 7 6 10 10 C 1.50704 * 109.47067 * 264.72083 * 9 8 7 11 11 O 1.21282 * 119.99606 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00376 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.52438 * 324.92363 * 13 12 10 15 15 C 1.53043 * 109.49594 * 85.00351 * 13 12 10 16 16 C 1.53038 * 109.52489 * 181.31045 * 15 13 12 17 17 C 1.53193 * 109.31111 * 298.63687 * 16 15 13 18 18 N 1.46926 * 108.77371 * 54.63976 * 17 16 15 19 19 C 1.36935 * 120.62940 * 126.41276 * 18 17 16 20 20 H 1.08007 * 120.00042 * 209.50576 * 19 18 17 21 21 C 1.38807 * 120.00149 * 29.51223 * 19 18 17 22 22 N 1.31616 * 120.00413 * 15.61498 * 21 19 18 23 23 Si 1.86807 * 119.99951 * 195.61833 * 21 19 18 24 24 H 1.48499 * 109.47121 * 94.71863 * 23 21 19 25 25 H 1.48497 * 109.46941 * 214.71938 * 23 21 19 26 26 H 1.48501 * 109.47134 * 334.71705 * 23 21 19 27 27 C 1.46924 * 118.73856 * 306.38819 * 18 17 16 28 28 H 1.09002 * 109.58763 * 293.82432 * 27 18 17 29 29 C 1.52998 * 109.59035 * 173.54032 * 27 18 17 30 30 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47437 * 300.00046 * 1 2 3 32 32 H 1.09004 * 109.47101 * 59.99334 * 1 2 3 33 33 H 1.07993 * 120.45731 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.58997 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.59453 * 180.26052 * 7 6 5 36 36 H 1.09000 * 109.47692 * 144.72195 * 9 8 7 37 37 H 1.09003 * 109.47428 * 24.71664 * 9 8 7 38 38 H 0.97000 * 119.99805 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46106 * 61.29585 * 15 13 12 40 40 H 1.08998 * 109.45806 * 301.31792 * 15 13 12 41 41 H 1.08996 * 109.50437 * 58.59024 * 16 15 13 42 42 H 1.09005 * 109.49876 * 178.69206 * 16 15 13 43 43 H 1.08997 * 109.58864 * 174.42553 * 17 16 15 44 44 H 1.09002 * 109.59043 * 294.85264 * 17 16 15 45 45 H 0.97001 * 120.00448 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.47223 * 59.99519 * 29 27 18 47 47 H 1.08990 * 109.47451 * 180.02562 * 29 27 18 48 48 H 1.09005 * 109.46948 * 300.00296 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0006 5 6 1.9676 3.5981 0.0011 6 7 3.2865 3.6458 0.0016 7 6 4.0230 2.5510 0.0064 8 6 3.4346 1.3029 0.0000 9 6 4.2838 0.0580 -0.0005 10 6 4.4646 -0.4261 -1.4162 11 8 3.9537 0.1799 -2.3341 12 7 5.1940 -1.5325 -1.6621 13 6 5.3693 -2.0033 -3.0383 14 1 4.4599 -1.8112 -3.6076 15 6 6.5429 -1.2643 -3.6854 16 6 6.7060 -1.7320 -5.1334 17 6 7.0116 -3.2331 -5.1495 18 7 5.9606 -3.9376 -4.4026 19 6 5.2751 -4.9760 -4.9743 20 1 4.2558 -5.1776 -4.6795 21 6 5.8902 -5.7697 -5.9326 22 7 7.1982 -5.7353 -6.0749 23 14 4.8615 -6.8868 -7.0205 24 1 4.5558 -6.1908 -8.2962 25 1 5.6172 -8.1330 -7.3053 26 1 3.5938 -7.2248 -6.3248 27 6 5.6596 -3.5072 -3.0304 28 1 6.5159 -3.7108 -2.3874 29 6 4.4366 -4.2660 -2.5114 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 0.2245 2.3567 0.0007 34 1 1.4008 4.5174 0.0012 35 1 5.0999 2.6327 0.0109 36 1 3.7931 -0.7169 0.5885 37 1 5.2580 0.2824 0.4339 38 1 5.6023 -2.0174 -0.9279 39 1 7.4564 -1.4767 -3.1300 40 1 6.3495 -0.1917 -3.6699 41 1 5.7841 -1.5425 -5.6831 42 1 7.5271 -1.1886 -5.6009 43 1 7.0308 -3.5911 -6.1788 44 1 7.9781 -3.4144 -4.6793 45 1 7.6281 -6.2902 -6.7444 46 1 4.6432 -5.3362 -2.5183 47 1 4.2148 -3.9450 -1.4937 48 1 3.5803 -4.0571 -3.1527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993486428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:21 Heat of formation + Delta-G solvation = -43.509894 kcal Electronic energy + Delta-G solvation = -29351.764543 eV Core-core repulsion = 25406.568651 eV Total energy + Delta-G solvation = -3945.195892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81494 -40.81027 -39.23045 -39.06650 -35.85312 -34.44043 -34.12346 -33.37734 -32.17726 -31.10849 -29.06434 -28.38086 -27.64378 -26.81936 -24.28416 -23.87691 -23.15623 -22.31718 -21.36004 -20.94685 -19.30601 -18.37038 -18.15832 -17.93714 -17.35879 -16.80456 -16.72507 -16.18982 -15.94704 -15.77863 -15.58117 -15.52336 -15.18983 -15.02108 -14.78814 -14.56802 -14.41693 -14.22840 -14.10295 -13.39360 -13.29541 -13.15058 -12.86772 -12.81829 -12.67775 -12.52501 -12.47590 -12.35716 -12.11819 -11.99763 -11.81172 -11.76275 -11.60670 -11.17935 -10.87240 -10.53478 -10.50577 -10.08753 -9.93802 -9.70535 -8.64726 -7.85712 -5.31814 0.10621 0.37249 1.45682 1.48258 1.55996 1.76760 2.19741 2.23978 2.54085 2.88681 3.29687 3.49857 3.63905 3.68011 3.85465 3.88007 3.94515 4.03842 4.13698 4.22359 4.25107 4.33265 4.34904 4.37606 4.45806 4.54400 4.63577 4.67270 4.68606 4.76875 4.80996 4.89855 4.94227 4.97717 5.04960 5.10290 5.14038 5.25293 5.31352 5.46235 5.51784 5.60307 5.63436 5.70482 5.77034 6.21879 6.42019 6.69982 7.04765 7.16465 7.40020 7.87028 8.38586 9.21220 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.002791 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.816555 B =10029.585504 C =10809.620721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.165 3.835 4 C -0.264 4.264 5 C 0.124 3.876 6 N -0.533 5.533 7 C 0.133 3.867 8 C -0.165 4.165 9 C -0.080 4.080 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.149 3.851 14 H 0.050 0.950 15 C -0.108 4.108 16 C -0.130 4.130 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.253 4.253 20 H 0.071 0.929 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.960 3.040 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.165 3.835 28 H 0.036 0.964 29 C -0.126 4.126 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.414 0.586 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.006 0.994 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 14.209 18.129 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.111 3.889 4 C -0.284 4.284 5 C -0.032 4.032 6 N -0.246 5.246 7 C -0.023 4.023 8 C -0.168 4.168 9 C -0.120 4.120 10 C 0.303 3.697 11 O -0.465 6.465 12 N -0.360 5.360 13 C 0.042 3.958 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.051 3.949 18 N -0.325 5.325 19 C -0.383 4.383 20 H 0.088 0.912 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.789 3.211 24 H -0.218 1.218 25 H -0.221 1.221 26 H -0.192 1.192 27 C 0.058 3.942 28 H 0.053 0.947 29 C -0.184 4.184 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.200 0.800 35 H 0.193 0.807 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.251 0.749 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.680 15.084 17.386 24.970 hybrid contribution -0.732 -1.729 -0.957 2.108 sum -10.412 13.355 16.429 23.594 Atomic orbital electron populations 1.23400 0.76021 1.05752 1.02516 1.86041 1.23800 1.26285 1.87401 1.19429 0.92379 0.85426 0.91616 1.22467 1.02761 0.92580 1.10642 1.23032 0.90090 0.98205 0.91901 1.67743 1.08146 1.32454 1.16221 1.22837 1.01123 0.86102 0.92222 1.19963 0.91361 0.97018 1.08471 1.20443 1.02796 0.95798 0.92936 1.21084 0.76918 0.79780 0.91887 1.90692 1.50003 1.57562 1.48204 1.45895 1.53084 1.28053 1.08950 1.21204 0.97387 0.94691 0.82471 0.93180 1.21671 0.98304 0.98760 0.95927 1.22026 1.00603 0.97926 0.96460 1.20615 0.89225 0.88339 0.96674 1.44284 1.42200 1.35732 1.10314 1.19446 0.94673 1.05498 1.18721 0.91154 1.25752 0.96073 0.99527 1.02985 1.70162 1.08647 1.42987 1.36108 0.85362 0.78521 0.78070 0.79190 1.21797 1.22091 1.19239 1.20724 0.96248 0.90720 0.86497 0.94655 1.21715 0.96629 1.00013 1.00023 0.86541 0.90333 0.92284 0.81969 0.79963 0.80686 0.86058 0.84242 0.74919 0.91286 0.92862 0.94135 0.91023 0.92917 0.97617 0.94214 0.93286 0.90479 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.84 113.37 1.12 1.34 16 2 O -0.32 -6.96 9.77 -90.61 -0.88 -7.85 16 3 C 0.17 3.70 6.70 22.76 0.15 3.86 16 4 C -0.26 -4.84 9.11 22.45 0.20 -4.64 16 5 C 0.12 2.35 11.17 84.60 0.95 3.29 16 6 N -0.53 -12.44 10.36 -196.08 -2.03 -14.47 16 7 C 0.13 2.90 10.83 84.62 0.92 3.82 16 8 C -0.16 -3.67 4.40 -19.68 -0.09 -3.76 16 9 C -0.08 -1.46 5.61 29.10 0.16 -1.30 16 10 C 0.52 14.20 7.79 87.66 0.68 14.89 16 11 O -0.58 -22.12 15.70 -3.04 -0.05 -22.17 16 12 N -0.71 -18.52 4.59 -442.20 -2.03 -20.55 16 13 C 0.15 5.27 2.00 45.06 0.09 5.36 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.13 16 15 C -0.11 -3.78 5.46 30.62 0.17 -3.62 16 16 C -0.13 -5.21 6.08 30.67 0.19 -5.03 16 17 C 0.18 8.58 5.28 86.36 0.46 9.03 16 18 N -0.60 -29.63 2.99 -675.28 -2.02 -31.65 16 19 C -0.25 -13.65 8.58 84.03 0.72 -12.93 16 20 H 0.07 3.72 6.23 -2.91 -0.02 3.70 16 21 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 22 N -0.93 -54.69 11.21 21.65 0.24 -54.45 16 23 Si 0.96 44.98 29.58 68.60 2.03 47.01 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.16 6.45 3.02 44.96 0.14 6.59 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 C -0.13 -4.53 7.84 71.98 0.56 -3.96 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 0.66 7.71 -2.39 -0.02 0.64 16 32 H 0.06 0.76 7.71 -2.39 -0.02 0.74 16 33 H 0.16 1.96 6.47 -2.91 -0.02 1.94 16 34 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.12 1.86 7.77 -2.39 -0.02 1.84 16 37 H 0.14 1.52 8.06 -2.39 -0.02 1.51 16 38 H 0.41 7.92 8.60 -92.71 -0.80 7.12 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 43 H 0.05 2.90 6.12 -2.39 -0.01 2.89 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.05 1.89 7.63 -2.39 -0.02 1.87 16 47 H 0.08 2.14 7.81 -2.39 -0.02 2.12 16 48 H 0.04 1.43 7.44 -2.38 -0.02 1.42 16 Total: -1.00 -75.53 384.72 2.27 -73.27 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.17 Total: 20.16 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.83 Total: 10.70 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -5.84 Total: -121.12 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.93 Total: -30.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.53 2.27 -73.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993486428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.757 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds