Wall clock time and date at job start Tue Mar 31 2020 17:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.58631 * 2 1 4 4 C 1.53192 * 109.58844 * 120.43431 * 2 1 3 5 5 H 1.08996 * 109.50029 * 54.43310 * 4 2 1 6 6 N 1.46502 * 109.49696 * 294.37128 * 4 2 1 7 7 C 1.34771 * 120.00432 * 154.99822 * 6 4 2 8 8 O 1.21589 * 119.99811 * 0.02562 * 7 6 4 9 9 C 1.47507 * 120.00613 * 180.02562 * 7 6 4 10 10 O 1.35188 * 127.14976 * 0.02562 * 9 7 6 11 11 N 1.21482 * 111.55708 * 179.91520 * 10 9 7 12 12 C 1.29068 * 111.67738 * 359.92088 * 11 10 9 13 13 C 1.35245 * 127.15892 * 179.71145 * 9 7 6 14 14 C 1.50114 * 131.33161 * 1.06758 * 13 9 7 15 15 C 1.53571 * 108.07634 * 163.22330 * 14 13 9 16 16 C 1.53012 * 109.80433 * 49.83933 * 15 14 13 17 17 C 1.50661 * 130.33202 * 180.31228 * 12 11 10 18 18 C 1.53038 * 109.31650 * 174.42227 * 4 2 1 19 19 C 1.53045 * 109.53332 * 298.63240 * 18 4 2 20 20 C 1.52760 * 109.38321 * 61.23914 * 19 18 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 19 18 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 19 23 23 H 1.07997 * 120.00569 * 150.45253 * 22 21 20 24 24 C 1.38817 * 119.99629 * 330.45237 * 22 21 20 25 25 N 1.31619 * 120.00210 * 336.14094 * 24 22 21 26 26 Si 1.86806 * 119.99761 * 156.14606 * 24 22 21 27 27 H 1.48499 * 109.47090 * 60.00122 * 26 24 22 28 28 H 1.48493 * 109.47023 * 299.99778 * 26 24 22 29 29 H 1.48497 * 109.46991 * 179.97438 * 26 24 22 30 30 H 1.09005 * 109.47199 * 180.28008 * 1 2 3 31 31 H 1.09005 * 109.47327 * 300.27816 * 1 2 3 32 32 H 1.08994 * 109.47505 * 60.27996 * 1 2 3 33 33 H 0.97006 * 120.00036 * 335.00348 * 6 4 2 34 34 H 1.08998 * 109.89841 * 43.47584 * 14 13 9 35 35 H 1.09001 * 109.59066 * 282.79286 * 14 13 9 36 36 H 1.08998 * 109.41715 * 289.74166 * 15 14 13 37 37 H 1.09001 * 109.36127 * 169.90642 * 15 14 13 38 38 H 1.08995 * 109.37746 * 168.11288 * 16 15 14 39 39 H 1.08997 * 109.28663 * 48.38852 * 16 15 14 40 40 H 1.09004 * 109.73572 * 282.87523 * 17 12 11 41 41 H 1.08989 * 109.74094 * 43.58385 * 17 12 11 42 42 H 1.09003 * 109.45745 * 58.64753 * 18 4 2 43 43 H 1.08998 * 109.46448 * 178.61534 * 18 4 2 44 44 H 1.09006 * 109.49638 * 181.31263 * 19 18 4 45 45 H 1.08999 * 109.50021 * 301.40895 * 19 18 4 46 46 H 1.09002 * 109.50885 * 185.70100 * 20 19 18 47 47 H 1.09001 * 109.43410 * 65.42323 * 20 19 18 48 48 H 0.96996 * 120.00106 * 354.26881 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7311 1.2444 5 1 1.6025 -1.7268 1.2893 6 7 1.6706 0.0234 2.4435 7 6 1.5472 -0.6097 3.6269 8 8 1.7460 -1.8070 3.6994 9 6 1.1712 0.1498 4.8342 10 8 0.9178 1.4751 4.9190 11 7 0.6316 1.8031 6.0531 12 6 0.6477 0.7953 6.8593 13 6 1.0024 -0.3356 6.0851 14 6 1.1530 -1.7227 6.6389 15 6 1.2506 -1.6174 8.1679 16 6 0.1108 -0.7470 8.7014 17 6 0.3569 0.7230 8.3358 18 6 3.5675 -0.8496 1.1690 19 6 3.9568 -1.6657 -0.0657 20 6 3.4643 -0.9502 -1.3224 21 7 2.0225 -0.6980 -1.1954 22 6 1.1535 -1.1107 -2.1700 23 1 0.1371 -1.3697 -1.9128 24 6 1.5792 -1.1961 -3.4885 25 7 2.6002 -0.4739 -3.8985 26 14 0.7026 -2.3361 -4.6809 27 1 -0.7236 -1.9370 -4.7895 28 1 0.7894 -3.7329 -4.1847 29 1 1.3449 -2.2439 -6.0166 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 1.5123 0.9787 2.3858 34 1 2.0577 -2.1841 6.2430 35 1 0.2842 -2.3217 6.3657 36 1 2.2063 -1.1695 8.4400 37 1 1.1801 -2.6139 8.6040 38 1 0.0571 -0.8460 9.7855 39 1 -0.8303 -1.0765 8.2610 40 1 1.2094 1.1044 8.8980 41 1 -0.5302 1.3130 8.5657 42 1 4.0061 0.1459 1.0994 43 1 3.9378 -1.3477 2.0650 44 1 5.0412 -1.7696 -0.1061 45 1 3.4982 -2.6529 -0.0088 46 1 3.6503 -1.5769 -2.1946 47 1 3.9927 -0.0031 -1.4311 48 1 3.0026 0.1786 -3.3042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993585953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:29 Heat of formation + Delta-G solvation = 27.185516 kcal Electronic energy + Delta-G solvation = -29517.147924 eV Core-core repulsion = 25575.017616 eV Total energy + Delta-G solvation = -3942.130309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.15944 -39.91131 -38.16594 -37.77639 -34.66440 -33.23746 -32.72884 -32.59016 -31.82529 -30.23626 -29.02013 -26.45951 -25.45664 -24.94017 -23.64301 -23.46470 -21.66992 -20.96117 -20.48768 -20.05478 -19.43199 -18.12572 -17.91550 -17.00652 -16.15235 -15.97230 -15.34154 -14.93210 -14.90188 -14.64217 -14.29729 -14.26656 -13.89856 -13.66917 -13.53648 -13.43220 -13.26279 -12.95010 -12.78785 -12.60945 -12.07877 -11.93851 -11.41192 -11.36646 -11.33430 -11.28865 -11.14018 -10.88874 -10.76984 -10.47110 -10.43800 -10.26964 -10.17702 -10.13169 -10.04581 -9.89013 -9.67851 -9.22570 -8.88682 -8.39294 -6.92736 -6.07057 -3.27525 0.68395 1.82945 2.49914 2.96739 3.20719 3.49091 3.52741 3.59349 3.70193 4.18181 4.39562 4.44770 4.57149 4.62642 4.74701 4.88804 5.03812 5.10171 5.13277 5.18832 5.26214 5.37349 5.38117 5.43604 5.51381 5.56246 5.59711 5.63106 5.73711 5.78314 5.87752 5.89924 5.93927 6.06614 6.19511 6.30533 6.34082 6.39689 6.51785 6.54580 6.61339 6.84581 6.94649 7.08310 7.17583 7.39798 7.86621 7.99484 8.06391 8.56055 9.07519 9.81997 10.24558 11.20557 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.002591 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.106031 B =10806.119526 C =10925.723907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.028 0.972 4 C 0.130 3.870 5 H 0.091 0.909 6 N -0.701 5.701 7 C 0.603 3.397 8 O -0.512 6.512 9 C -0.074 4.074 10 O 0.099 5.901 11 N -0.335 5.335 12 C 0.015 3.985 13 C -0.124 4.124 14 C -0.049 4.049 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.040 4.040 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.148 3.852 21 N -0.588 5.588 22 C -0.349 4.349 23 H 0.062 0.938 24 C -0.021 4.021 25 N -0.915 5.915 26 Si 1.063 2.937 27 H -0.293 1.293 28 H -0.293 1.293 29 H -0.286 1.286 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.403 0.597 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.018 0.982 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 0.881 23.716 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.061 3.939 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.110 0.890 6 N -0.350 5.350 7 C 0.385 3.615 8 O -0.388 6.388 9 C -0.139 4.139 10 O 0.030 5.970 11 N -0.038 5.038 12 C -0.146 4.146 13 C -0.129 4.129 14 C -0.086 4.086 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.078 4.078 18 C -0.157 4.157 19 C -0.174 4.174 20 C 0.022 3.978 21 N -0.313 5.313 22 C -0.478 4.478 23 H 0.079 0.921 24 C -0.224 4.224 25 N -0.555 5.555 26 Si 0.893 3.107 27 H -0.220 1.220 28 H -0.220 1.220 29 H -0.211 1.211 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.238 0.762 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.036 0.964 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.357 0.701 22.267 22.402 hybrid contribution 0.011 0.526 1.663 1.744 sum -2.346 1.227 23.930 24.076 Atomic orbital electron populations 1.21808 0.95302 1.01809 1.00365 1.20549 0.93618 0.93372 0.86325 0.95414 1.21926 0.95340 0.97008 0.83230 0.89047 1.46073 1.68369 1.12718 1.07887 1.16500 0.78067 0.85987 0.80934 1.90857 1.50796 1.12856 1.84268 1.23618 1.08087 0.84666 0.97505 1.85257 1.64753 1.22877 1.24071 1.73434 1.15941 1.23827 0.90645 1.23414 1.03135 0.88680 0.99335 1.21101 1.01783 0.98823 0.91204 1.20114 1.04176 0.89772 0.94560 1.21682 0.99012 1.00606 0.94608 1.21629 0.99486 0.93202 1.01419 1.20127 1.02991 0.98418 0.86232 1.21781 0.95108 1.00298 0.98513 1.21990 0.99475 0.99792 0.96121 1.20934 0.84162 0.96907 0.95755 1.44100 1.02724 1.65510 1.18923 1.19942 0.96066 1.43748 0.88080 0.92051 1.25851 1.00033 1.00785 0.95706 1.70775 1.25700 1.21057 1.37990 0.83546 0.75031 0.75929 0.76179 1.21989 1.22004 1.21132 0.92563 0.94261 0.91617 0.76196 0.88847 0.89408 0.91445 0.90551 0.90418 0.91196 0.89327 0.89459 0.92496 0.92757 0.92608 0.92068 0.90115 0.96394 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.83 37.16 0.29 -2.22 16 2 C 0.17 3.31 3.04 -67.60 -0.21 3.11 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.26 2.00 -67.81 -0.14 2.12 16 5 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 6 N -0.70 -10.14 4.58 -54.74 -0.25 -10.39 16 7 C 0.60 8.99 7.78 -12.49 -0.10 8.89 16 8 O -0.51 -8.89 15.60 5.29 0.08 -8.80 16 9 C -0.07 -0.99 7.28 -36.87 -0.27 -1.26 16 10 O 0.10 1.30 11.10 13.82 0.15 1.46 16 11 N -0.34 -4.35 12.03 33.15 0.40 -3.95 16 12 C 0.02 0.17 7.21 -82.50 -0.60 -0.43 16 13 C -0.12 -1.48 6.03 -104.70 -0.63 -2.11 16 14 C -0.05 -0.48 5.59 -27.87 -0.16 -0.63 16 15 C -0.12 -0.83 5.87 -26.43 -0.16 -0.98 16 16 C -0.12 -0.72 5.84 -26.49 -0.15 -0.87 16 17 C -0.04 -0.29 6.32 -27.66 -0.17 -0.47 16 18 C -0.12 -2.02 5.46 -26.69 -0.15 -2.16 16 19 C -0.13 -2.51 6.06 -26.83 -0.16 -2.67 16 20 C 0.15 3.34 4.66 -3.93 -0.02 3.32 16 21 N -0.59 -13.94 2.84 -165.04 -0.47 -14.41 16 22 C -0.35 -9.25 8.49 -15.06 -0.13 -9.38 16 23 H 0.06 1.62 6.28 -52.49 -0.33 1.29 16 24 C -0.02 -0.59 4.70 -17.43 -0.08 -0.67 16 25 N -0.92 -26.66 12.46 55.49 0.69 -25.96 16 26 Si 1.06 24.76 29.98 -169.99 -5.10 19.66 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 31 H 0.04 0.61 7.80 -51.93 -0.41 0.20 16 32 H 0.06 1.32 7.62 -51.93 -0.40 0.92 16 33 H 0.40 5.04 8.44 -40.82 -0.34 4.70 16 34 H 0.09 1.00 7.78 -51.93 -0.40 0.60 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.46 8.11 -51.93 -0.42 0.03 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.57 8.14 -51.94 -0.42 0.15 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 2.05 6.40 -51.93 -0.33 1.72 16 47 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 48 H 0.27 7.88 6.69 -40.82 -0.27 7.60 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -30.50 375.57 -9.18 -39.69 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.54 Total: 3.46 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.82 Total: -6.41 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.37 Total: -54.71 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.24 Total: -7.35 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.50 -9.18 -39.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993585953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.874 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds