Wall clock time and date at job start Tue Mar 31 2020 17:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.58631 * 2 1 4 4 C 1.53192 * 109.58844 * 120.43431 * 2 1 3 5 5 H 1.08996 * 109.50029 * 54.43310 * 4 2 1 6 6 N 1.46502 * 109.49696 * 294.37128 * 4 2 1 7 7 C 1.34771 * 120.00432 * 154.99822 * 6 4 2 8 8 O 1.21589 * 119.99811 * 0.02562 * 7 6 4 9 9 C 1.47507 * 120.00613 * 180.02562 * 7 6 4 10 10 O 1.35188 * 127.14976 * 0.02562 * 9 7 6 11 11 N 1.21482 * 111.55708 * 179.91520 * 10 9 7 12 12 C 1.29068 * 111.67738 * 359.92088 * 11 10 9 13 13 C 1.35245 * 127.15892 * 179.71145 * 9 7 6 14 14 C 1.50114 * 131.33161 * 1.06758 * 13 9 7 15 15 C 1.53571 * 108.07634 * 163.22330 * 14 13 9 16 16 C 1.53012 * 109.80433 * 49.83933 * 15 14 13 17 17 C 1.50661 * 130.33202 * 180.31228 * 12 11 10 18 18 C 1.53038 * 109.31650 * 174.42227 * 4 2 1 19 19 C 1.53045 * 109.53332 * 298.63240 * 18 4 2 20 20 C 1.52760 * 109.38321 * 61.23914 * 19 18 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 19 18 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 19 23 23 H 1.07997 * 120.00569 * 150.45253 * 22 21 20 24 24 C 1.38817 * 119.99629 * 330.45237 * 22 21 20 25 25 N 1.31619 * 120.00210 * 336.14094 * 24 22 21 26 26 Si 1.86806 * 119.99761 * 156.14606 * 24 22 21 27 27 H 1.48499 * 109.47090 * 60.00122 * 26 24 22 28 28 H 1.48493 * 109.47023 * 299.99778 * 26 24 22 29 29 H 1.48497 * 109.46991 * 179.97438 * 26 24 22 30 30 H 1.09005 * 109.47199 * 180.28008 * 1 2 3 31 31 H 1.09005 * 109.47327 * 300.27816 * 1 2 3 32 32 H 1.08994 * 109.47505 * 60.27996 * 1 2 3 33 33 H 0.97006 * 120.00036 * 335.00348 * 6 4 2 34 34 H 1.08998 * 109.89841 * 43.47584 * 14 13 9 35 35 H 1.09001 * 109.59066 * 282.79286 * 14 13 9 36 36 H 1.08998 * 109.41715 * 289.74166 * 15 14 13 37 37 H 1.09001 * 109.36127 * 169.90642 * 15 14 13 38 38 H 1.08995 * 109.37746 * 168.11288 * 16 15 14 39 39 H 1.08997 * 109.28663 * 48.38852 * 16 15 14 40 40 H 1.09004 * 109.73572 * 282.87523 * 17 12 11 41 41 H 1.08989 * 109.74094 * 43.58385 * 17 12 11 42 42 H 1.09003 * 109.45745 * 58.64753 * 18 4 2 43 43 H 1.08998 * 109.46448 * 178.61534 * 18 4 2 44 44 H 1.09006 * 109.49638 * 181.31263 * 19 18 4 45 45 H 1.08999 * 109.50021 * 301.40895 * 19 18 4 46 46 H 1.09002 * 109.50885 * 185.70100 * 20 19 18 47 47 H 1.09001 * 109.43410 * 65.42323 * 20 19 18 48 48 H 0.96996 * 120.00106 * 354.26881 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7311 1.2444 5 1 1.6025 -1.7268 1.2893 6 7 1.6706 0.0234 2.4435 7 6 1.5472 -0.6097 3.6269 8 8 1.7460 -1.8070 3.6994 9 6 1.1712 0.1498 4.8342 10 8 0.9178 1.4751 4.9190 11 7 0.6316 1.8031 6.0531 12 6 0.6477 0.7953 6.8593 13 6 1.0024 -0.3356 6.0851 14 6 1.1530 -1.7227 6.6389 15 6 1.2506 -1.6174 8.1679 16 6 0.1108 -0.7470 8.7014 17 6 0.3569 0.7230 8.3358 18 6 3.5675 -0.8496 1.1690 19 6 3.9568 -1.6657 -0.0657 20 6 3.4643 -0.9502 -1.3224 21 7 2.0225 -0.6980 -1.1954 22 6 1.1535 -1.1107 -2.1700 23 1 0.1371 -1.3697 -1.9128 24 6 1.5792 -1.1961 -3.4885 25 7 2.6002 -0.4739 -3.8985 26 14 0.7026 -2.3361 -4.6809 27 1 -0.7236 -1.9370 -4.7895 28 1 0.7894 -3.7329 -4.1847 29 1 1.3449 -2.2439 -6.0166 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 1.5123 0.9787 2.3858 34 1 2.0577 -2.1841 6.2430 35 1 0.2842 -2.3217 6.3657 36 1 2.2063 -1.1695 8.4400 37 1 1.1801 -2.6139 8.6040 38 1 0.0571 -0.8460 9.7855 39 1 -0.8303 -1.0765 8.2610 40 1 1.2094 1.1044 8.8980 41 1 -0.5302 1.3130 8.5657 42 1 4.0061 0.1459 1.0994 43 1 3.9378 -1.3477 2.0650 44 1 5.0412 -1.7696 -0.1061 45 1 3.4982 -2.6529 -0.0088 46 1 3.6503 -1.5769 -2.1946 47 1 3.9927 -0.0031 -1.4311 48 1 3.0026 0.1786 -3.3042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993585953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:28 Heat of formation + Delta-G solvation = 9.527967 kcal Electronic energy + Delta-G solvation = -29517.913613 eV Core-core repulsion = 25575.017616 eV Total energy + Delta-G solvation = -3942.895997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.08970 -41.24065 -39.49334 -38.70777 -36.22820 -34.51623 -34.00271 -33.49833 -33.38784 -31.29735 -30.45806 -28.04372 -26.88423 -26.15951 -24.85052 -24.25204 -23.18790 -22.55624 -21.54193 -21.08813 -20.74890 -19.30883 -18.87854 -18.81485 -17.48585 -16.99167 -16.47608 -16.20217 -16.13670 -15.91841 -15.55671 -15.45846 -15.11356 -15.04248 -14.93347 -14.79851 -14.41872 -14.22909 -13.68128 -13.54131 -13.41872 -13.07920 -13.00216 -12.84970 -12.78454 -12.56388 -12.09241 -11.99975 -11.92815 -11.91209 -11.88436 -11.81072 -11.72512 -11.56974 -11.40261 -11.06194 -11.00994 -10.66445 -10.47253 -10.17290 -8.91088 -8.18450 -5.37158 -0.34718 0.94872 1.41435 1.60073 1.66783 1.81131 1.85011 2.06278 2.67913 2.81927 3.24328 3.32092 3.49387 3.65296 3.76961 3.79435 3.88663 3.93182 3.97853 4.06898 4.22612 4.27373 4.34083 4.36935 4.39662 4.49638 4.50855 4.63786 4.70274 4.81004 4.83465 4.87628 4.91773 4.95804 5.01184 5.04350 5.10063 5.12336 5.14024 5.26387 5.26706 5.27815 5.34893 5.38196 5.51097 5.93577 6.20563 6.45082 6.81503 6.95517 7.08439 7.80729 8.24030 9.06450 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.002591 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.106031 B =10806.119526 C =10925.723907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.034 0.966 4 C 0.148 3.852 5 H 0.069 0.931 6 N -0.693 5.693 7 C 0.609 3.391 8 O -0.538 6.538 9 C -0.092 4.092 10 O 0.090 5.910 11 N -0.353 5.353 12 C 0.021 3.979 13 C -0.122 4.122 14 C -0.053 4.053 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.042 4.042 18 C -0.111 4.111 19 C -0.123 4.123 20 C 0.153 3.847 21 N -0.607 5.607 22 C -0.345 4.345 23 H 0.059 0.941 24 C -0.074 4.074 25 N -0.945 5.945 26 Si 1.109 2.891 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.294 1.294 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.415 0.585 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.011 0.989 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 0.780 26.806 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.052 0.948 4 C 0.042 3.958 5 H 0.087 0.913 6 N -0.343 5.343 7 C 0.393 3.607 8 O -0.416 6.416 9 C -0.156 4.156 10 O 0.023 5.977 11 N -0.058 5.058 12 C -0.140 4.140 13 C -0.127 4.127 14 C -0.090 4.090 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.080 4.080 18 C -0.150 4.150 19 C -0.163 4.163 20 C 0.028 3.972 21 N -0.332 5.332 22 C -0.475 4.475 23 H 0.077 0.923 24 C -0.270 4.270 25 N -0.587 5.587 26 Si 0.934 3.066 27 H -0.203 1.203 28 H -0.209 1.209 29 H -0.220 1.220 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.029 0.971 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.003 0.623 25.387 25.571 hybrid contribution 0.185 0.592 0.820 1.028 sum -2.818 1.215 26.207 26.386 Atomic orbital electron populations 1.21715 0.94531 1.01130 1.01029 1.20698 0.94317 0.93410 0.85704 0.94846 1.21439 0.95432 0.95707 0.83251 0.91305 1.45844 1.68381 1.13082 1.07022 1.16569 0.77273 0.85679 0.81198 1.90843 1.51929 1.14048 1.84768 1.23332 1.09801 0.85121 0.97296 1.85239 1.65425 1.22595 1.24434 1.73424 1.16890 1.24650 0.90875 1.24048 1.01420 0.87642 1.00872 1.21515 1.00303 1.00034 0.90807 1.20234 1.03466 0.88419 0.96873 1.21697 0.99609 1.02032 0.92123 1.21652 0.98761 0.91814 1.03085 1.20400 1.04149 0.99805 0.83657 1.21716 0.94726 1.00675 0.97864 1.21846 1.00735 0.98818 0.94898 1.20796 0.83884 0.96252 0.96295 1.44319 1.02917 1.66329 1.19593 1.20151 0.96330 1.42313 0.88684 0.92330 1.27038 1.00492 1.01805 0.97691 1.70883 1.27427 1.22385 1.37983 0.82923 0.74841 0.74819 0.73994 1.20254 1.20916 1.22025 0.93874 0.90963 0.93493 0.74838 0.90104 0.89434 0.91147 0.88732 0.87618 0.91564 0.87714 0.88308 0.91357 0.91726 0.90254 0.93175 0.93553 0.97115 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 7.83 71.98 0.56 -4.09 16 2 C 0.17 6.45 3.04 44.97 0.14 6.58 16 3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.15 5.04 2.00 45.07 0.09 5.13 16 5 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 6 N -0.69 -19.31 4.58 -445.37 -2.04 -21.35 16 7 C 0.61 17.69 7.78 86.69 0.67 18.36 16 8 O -0.54 -18.45 15.60 -3.99 -0.06 -18.51 16 9 C -0.09 -2.35 7.28 24.03 0.17 -2.17 16 10 O 0.09 2.27 11.10 59.47 0.66 2.93 16 11 N -0.35 -8.66 12.03 -50.86 -0.61 -9.27 16 12 C 0.02 0.43 7.21 43.77 0.32 0.75 16 13 C -0.12 -2.72 6.03 -19.92 -0.12 -2.84 16 14 C -0.05 -0.95 5.59 29.86 0.17 -0.78 16 15 C -0.12 -1.25 5.87 30.79 0.18 -1.07 16 16 C -0.12 -0.98 5.84 30.75 0.18 -0.80 16 17 C -0.04 -0.49 6.32 29.99 0.19 -0.30 16 18 C -0.11 -3.66 5.46 30.62 0.17 -3.49 16 19 C -0.12 -4.57 6.06 30.53 0.19 -4.38 16 20 C 0.15 7.06 4.66 86.22 0.40 7.46 16 21 N -0.61 -29.23 2.84 -676.07 -1.92 -31.15 16 22 C -0.35 -18.59 8.49 84.03 0.71 -17.88 16 23 H 0.06 3.14 6.28 -2.91 -0.02 3.12 16 24 C -0.07 -4.12 4.70 84.86 0.40 -3.72 16 25 N -0.94 -56.66 12.46 21.65 0.27 -56.39 16 26 Si 1.11 50.71 29.98 68.60 2.06 52.76 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 30 H 0.04 1.68 7.44 -2.38 -0.02 1.66 16 31 H 0.07 2.14 7.80 -2.38 -0.02 2.12 16 32 H 0.05 1.88 7.62 -2.39 -0.02 1.86 16 33 H 0.41 9.79 8.44 -92.70 -0.78 9.00 16 34 H 0.08 1.67 7.78 -2.39 -0.02 1.65 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 0.73 8.11 -2.39 -0.02 0.72 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.07 0.64 8.10 -2.39 -0.02 0.62 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 44 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 2.44 6.40 -2.39 -0.02 2.42 16 47 H 0.01 0.51 7.85 -2.39 -0.02 0.49 16 48 H 0.26 15.54 6.69 -92.71 -0.62 14.92 16 Total: -1.00 -67.51 375.57 3.11 -64.40 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.34 Total: 19.82 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.42 Total: -3.24 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -4.30 Total: -118.16 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.60 Total: -15.58 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.06 Total: 52.76 kcal Total: -67.51 3.11 -64.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993585953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.925 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds