Wall clock time and date at job start Tue Mar 31 2020 17:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 116.99412 * 2 1 4 4 C 1.38926 * 119.68470 * 180.29527 * 3 2 1 5 5 C 1.38373 * 119.11444 * 180.25085 * 4 3 2 6 6 C 1.50701 * 120.75970 * 179.73413 * 5 4 3 7 7 C 1.50703 * 109.47178 * 269.72222 * 6 5 4 8 8 O 1.21287 * 119.99767 * 0.02562 * 7 6 5 9 9 N 1.34766 * 119.99926 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49420 * 324.93657 * 10 9 7 12 12 C 1.53039 * 109.50048 * 85.00014 * 10 9 7 13 13 C 1.53040 * 109.54003 * 181.35060 * 12 10 9 14 14 C 1.53187 * 109.31224 * 298.63301 * 13 12 10 15 15 N 1.46925 * 108.77389 * 54.63654 * 14 13 12 16 16 C 1.36941 * 120.63374 * 126.36898 * 15 14 13 17 17 H 1.07996 * 120.00515 * 208.73251 * 16 15 14 18 18 C 1.38813 * 119.99603 * 28.72567 * 16 15 14 19 19 N 1.31628 * 120.00191 * 16.83052 * 18 16 15 20 20 Si 1.86799 * 119.99963 * 196.82678 * 18 16 15 21 21 H 1.48492 * 109.47416 * 85.26598 * 20 18 16 22 22 H 1.48508 * 109.47253 * 325.26444 * 20 18 16 23 23 H 1.48501 * 109.47334 * 205.26523 * 20 18 16 24 24 C 1.46925 * 118.73950 * 306.63953 * 15 14 13 25 25 H 1.08997 * 109.58990 * 293.56953 * 24 15 14 26 26 C 1.52998 * 109.58869 * 173.14348 * 24 15 14 27 27 C 1.38826 * 118.48281 * 359.46054 * 5 4 3 28 28 C 1.38047 * 119.29094 * 0.27415 * 27 5 4 29 29 N 1.31957 * 120.83286 * 359.97438 * 28 27 5 30 30 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47733 * 300.00146 * 1 2 3 32 32 H 1.09001 * 109.47058 * 60.00262 * 1 2 3 33 33 H 1.08003 * 120.44093 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47546 * 149.72117 * 6 5 4 35 35 H 1.09005 * 109.47207 * 29.72216 * 6 5 4 36 36 H 0.97006 * 120.00480 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.45921 * 61.32606 * 12 10 9 38 38 H 1.08999 * 109.45859 * 301.37434 * 12 10 9 39 39 H 1.09003 * 109.49761 * 178.68356 * 13 12 10 40 40 H 1.08998 * 109.49520 * 58.58658 * 13 12 10 41 41 H 1.08995 * 109.58791 * 294.84682 * 14 13 12 42 42 H 1.08999 * 109.58861 * 174.42178 * 14 13 12 43 43 H 0.96996 * 119.99488 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46927 * 60.00339 * 26 24 15 45 45 H 1.08997 * 109.47543 * 179.97438 * 26 24 15 46 46 H 1.08995 * 109.47386 * 300.00717 * 26 24 15 47 47 H 1.08006 * 120.35613 * 180.29502 * 27 5 4 48 48 H 1.08004 * 119.58285 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4325 1.2742 -0.0062 5 6 4.0483 2.5133 -0.0009 6 6 5.5510 2.6272 -0.0013 7 6 6.0523 2.6654 1.4194 8 8 5.2667 2.6056 2.3415 9 7 7.3736 2.7651 1.6652 10 6 7.8610 2.8017 3.0463 11 1 7.1470 3.3398 3.6699 12 6 8.0209 1.3725 3.5697 13 6 8.4979 1.4101 5.0234 14 6 9.8612 2.1052 5.0915 15 7 9.7505 3.4264 4.4584 16 6 10.1367 4.5562 5.1291 17 1 9.6643 5.5023 4.9101 18 6 11.1352 4.4851 6.0908 19 7 11.9339 3.4397 6.1343 20 14 11.3457 5.8732 7.3230 21 1 10.4293 5.6587 8.4716 22 1 11.0259 7.1679 6.6696 23 1 12.7493 5.8966 7.8074 24 6 9.2120 3.5132 3.0941 25 1 9.8998 3.0326 2.3985 26 6 9.0298 4.9822 2.7071 27 6 3.2502 3.6492 -0.0009 28 6 1.8768 3.5097 -0.0005 29 7 1.3185 2.3141 -0.0006 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0228 0.3697 -0.0106 34 1 5.8460 3.5420 -0.5154 35 1 5.9805 1.7671 -0.5151 36 1 8.0021 2.8119 0.9278 37 1 8.7534 0.8427 2.9608 38 1 7.0624 0.8565 3.5152 39 1 8.5891 0.3923 5.4028 40 1 7.7779 1.9612 5.6283 41 1 10.6031 1.5074 4.5621 42 1 10.1598 2.2231 6.1331 43 1 12.6318 3.3904 6.8061 44 1 9.9927 5.4912 2.7495 45 1 8.6307 5.0444 1.6947 46 1 8.3367 5.4575 3.4011 47 1 3.6990 4.6316 -0.0016 48 1 1.2514 4.3903 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993824179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:00 Heat of formation + Delta-G solvation = -20.415844 kcal Electronic energy + Delta-G solvation = -28769.176319 eV Core-core repulsion = 24824.981861 eV Total energy + Delta-G solvation = -3944.194458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88764 -39.75455 -38.20395 -37.55680 -34.36093 -33.90721 -32.58606 -31.71633 -30.92260 -29.73560 -28.42757 -27.26696 -26.11082 -25.01373 -23.65181 -22.81299 -21.73424 -20.71957 -20.21986 -19.38608 -18.05955 -17.31364 -17.02513 -16.39827 -16.14855 -16.11549 -15.68997 -15.22878 -14.96267 -14.45089 -14.34591 -14.03090 -13.79578 -13.69184 -13.43529 -13.32743 -12.98498 -12.89297 -12.57534 -12.45658 -12.15007 -11.79244 -11.68923 -11.56636 -11.40275 -11.13221 -10.93490 -10.78727 -10.58208 -10.32568 -10.17675 -10.06254 -10.04532 -9.85995 -9.82279 -9.54739 -9.34372 -8.70531 -8.66505 -8.46736 -6.70947 -5.81700 -3.24942 0.99006 1.08340 2.75053 2.88351 3.29427 3.37015 3.44121 3.44660 3.70064 4.12244 4.34714 4.47524 4.70297 4.90333 4.91975 4.95631 5.04719 5.08335 5.20372 5.23846 5.26928 5.37436 5.40671 5.49443 5.56169 5.59472 5.70977 5.77531 5.94294 6.06417 6.11154 6.18852 6.22425 6.30814 6.37472 6.50895 6.61087 6.69545 6.73096 6.83135 6.96070 7.04334 7.05010 7.37828 7.63963 7.67691 7.70526 7.79802 8.37244 8.43457 9.17707 9.80839 10.36695 11.27120 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.002343 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.446185 B =11945.133322 C =12299.669719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.176 4.176 5 C 0.017 3.983 6 C -0.107 4.107 7 C 0.513 3.487 8 O -0.534 6.534 9 N -0.718 5.718 10 C 0.131 3.869 11 H 0.085 0.915 12 C -0.117 4.117 13 C -0.140 4.140 14 C 0.169 3.831 15 N -0.582 5.582 16 C -0.253 4.253 17 H 0.071 0.929 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.279 1.279 23 H -0.292 1.292 24 C 0.168 3.832 25 H 0.027 0.973 26 C -0.136 4.136 27 C -0.195 4.195 28 C 0.138 3.862 29 N -0.544 5.544 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.137 0.863 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -3.622 -16.180 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.196 4.196 5 C 0.009 3.991 6 C -0.147 4.147 7 C 0.298 3.702 8 O -0.410 6.410 9 N -0.368 5.368 10 C 0.026 3.974 11 H 0.103 0.897 12 C -0.155 4.155 13 C -0.180 4.180 14 C 0.044 3.956 15 N -0.305 5.305 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.205 1.205 23 H -0.218 1.218 24 C 0.060 3.940 25 H 0.045 0.955 26 C -0.194 4.194 27 C -0.215 4.215 28 C -0.017 4.017 29 N -0.268 5.268 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.154 0.846 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.152 -4.024 -15.377 23.385 hybrid contribution 1.133 0.789 0.376 1.430 sum -16.019 -3.236 -15.001 22.184 Atomic orbital electron populations 1.22834 0.77344 1.02812 1.02392 1.86234 1.22835 1.24656 1.87959 1.19729 0.89204 0.84661 0.92338 1.20851 0.92041 0.98930 1.07819 1.19454 0.94614 0.92321 0.92731 1.20747 0.91832 1.05846 0.96310 1.20227 0.82735 0.76842 0.90398 1.90749 1.55224 1.48997 1.46039 1.46126 1.06675 1.74199 1.09839 1.21704 0.98193 0.96974 0.80569 0.89672 1.21757 0.99968 0.96175 0.97637 1.22183 1.01173 0.99871 0.94802 1.20837 0.90406 0.84371 1.00003 1.44032 1.73063 1.03818 1.09611 1.19162 1.13784 0.88714 1.16539 0.91158 1.25057 0.95510 0.97614 1.01318 1.70040 1.18733 1.30377 1.35384 0.86319 0.76850 0.81843 0.81808 1.21376 1.20478 1.21788 1.20467 0.90572 0.94002 0.88963 0.95537 1.21820 1.02164 0.96797 0.98608 1.21839 0.94775 0.99321 1.05580 1.22312 0.92688 0.93561 0.93105 1.67267 1.41026 0.98877 1.19592 0.88734 0.92315 0.92408 0.84317 0.87229 0.87407 0.76984 0.92767 0.93225 0.92998 0.92544 0.96260 0.89416 0.93629 0.91743 0.94303 0.92715 0.84559 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.70 10.48 -18.73 -0.20 -3.89 16 3 C 0.32 4.07 7.49 -17.12 -0.13 3.94 16 4 C -0.18 -2.09 9.74 -39.28 -0.38 -2.48 16 5 C 0.02 0.19 4.41 -104.35 -0.46 -0.27 16 6 C -0.11 -0.97 5.88 -29.03 -0.17 -1.14 16 7 C 0.51 6.95 7.79 -10.99 -0.09 6.87 16 8 O -0.53 -9.75 15.70 5.55 0.09 -9.66 16 9 N -0.72 -9.51 4.58 -53.90 -0.25 -9.75 16 10 C 0.13 2.29 1.97 -68.03 -0.13 2.15 16 11 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 12 C -0.12 -2.07 5.46 -26.69 -0.15 -2.21 16 13 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 14 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 15 N -0.58 -13.94 3.00 -165.04 -0.49 -14.43 16 16 C -0.25 -6.63 8.60 -15.06 -0.13 -6.76 16 17 H 0.07 1.81 6.20 -52.49 -0.33 1.48 16 18 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 19 N -0.90 -25.54 11.23 55.49 0.62 -24.92 16 20 Si 0.90 21.39 29.59 -169.99 -5.03 16.37 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 C 0.17 3.26 3.02 -67.82 -0.20 3.05 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 C -0.14 -2.43 7.82 37.16 0.29 -2.14 16 27 C -0.19 -2.00 9.81 -39.43 -0.39 -2.39 16 28 C 0.14 1.44 11.18 -17.57 -0.20 1.25 16 29 N -0.54 -6.68 9.22 -13.33 -0.12 -6.81 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.11 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.11 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.40 4.05 8.61 -40.82 -0.35 3.70 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 2.31 6.10 -51.93 -0.32 1.99 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.24 7.61 -51.93 -0.40 0.84 16 45 H 0.04 0.55 7.79 -51.93 -0.40 0.14 16 46 H 0.05 1.04 7.45 -51.93 -0.39 0.65 16 47 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 48 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -33.08 388.17 -8.50 -41.58 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.62 Total: 3.37 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.35 Total: 2.31 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.24 Total: -55.92 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.11 Total: -13.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.08 -8.50 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993824179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.164 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds