Wall clock time and date at job start Tue Mar 31 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 116.99412 * 2 1 4 4 C 1.38926 * 119.68470 * 180.29527 * 3 2 1 5 5 C 1.38373 * 119.11444 * 180.25085 * 4 3 2 6 6 C 1.50701 * 120.75970 * 179.73413 * 5 4 3 7 7 C 1.50703 * 109.47178 * 269.72222 * 6 5 4 8 8 O 1.21287 * 119.99767 * 0.02562 * 7 6 5 9 9 N 1.34766 * 119.99926 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49420 * 324.93657 * 10 9 7 12 12 C 1.53039 * 109.50048 * 85.00014 * 10 9 7 13 13 C 1.53040 * 109.54003 * 181.35060 * 12 10 9 14 14 C 1.53187 * 109.31224 * 298.63301 * 13 12 10 15 15 N 1.46925 * 108.77389 * 54.63654 * 14 13 12 16 16 C 1.36941 * 120.63374 * 126.36898 * 15 14 13 17 17 H 1.07996 * 120.00515 * 208.73251 * 16 15 14 18 18 C 1.38813 * 119.99603 * 28.72567 * 16 15 14 19 19 N 1.31628 * 120.00191 * 16.83052 * 18 16 15 20 20 Si 1.86799 * 119.99963 * 196.82678 * 18 16 15 21 21 H 1.48492 * 109.47416 * 85.26598 * 20 18 16 22 22 H 1.48508 * 109.47253 * 325.26444 * 20 18 16 23 23 H 1.48501 * 109.47334 * 205.26523 * 20 18 16 24 24 C 1.46925 * 118.73950 * 306.63953 * 15 14 13 25 25 H 1.08997 * 109.58990 * 293.56953 * 24 15 14 26 26 C 1.52998 * 109.58869 * 173.14348 * 24 15 14 27 27 C 1.38826 * 118.48281 * 359.46054 * 5 4 3 28 28 C 1.38047 * 119.29094 * 0.27415 * 27 5 4 29 29 N 1.31957 * 120.83286 * 359.97438 * 28 27 5 30 30 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47733 * 300.00146 * 1 2 3 32 32 H 1.09001 * 109.47058 * 60.00262 * 1 2 3 33 33 H 1.08003 * 120.44093 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47546 * 149.72117 * 6 5 4 35 35 H 1.09005 * 109.47207 * 29.72216 * 6 5 4 36 36 H 0.97006 * 120.00480 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.45921 * 61.32606 * 12 10 9 38 38 H 1.08999 * 109.45859 * 301.37434 * 12 10 9 39 39 H 1.09003 * 109.49761 * 178.68356 * 13 12 10 40 40 H 1.08998 * 109.49520 * 58.58658 * 13 12 10 41 41 H 1.08995 * 109.58791 * 294.84682 * 14 13 12 42 42 H 1.08999 * 109.58861 * 174.42178 * 14 13 12 43 43 H 0.96996 * 119.99488 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46927 * 60.00339 * 26 24 15 45 45 H 1.08997 * 109.47543 * 179.97438 * 26 24 15 46 46 H 1.08995 * 109.47386 * 300.00717 * 26 24 15 47 47 H 1.08006 * 120.35613 * 180.29502 * 27 5 4 48 48 H 1.08004 * 119.58285 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4325 1.2742 -0.0062 5 6 4.0483 2.5133 -0.0009 6 6 5.5510 2.6272 -0.0013 7 6 6.0523 2.6654 1.4194 8 8 5.2667 2.6056 2.3415 9 7 7.3736 2.7651 1.6652 10 6 7.8610 2.8017 3.0463 11 1 7.1470 3.3398 3.6699 12 6 8.0209 1.3725 3.5697 13 6 8.4979 1.4101 5.0234 14 6 9.8612 2.1052 5.0915 15 7 9.7505 3.4264 4.4584 16 6 10.1367 4.5562 5.1291 17 1 9.6643 5.5023 4.9101 18 6 11.1352 4.4851 6.0908 19 7 11.9339 3.4397 6.1343 20 14 11.3457 5.8732 7.3230 21 1 10.4293 5.6587 8.4716 22 1 11.0259 7.1679 6.6696 23 1 12.7493 5.8966 7.8074 24 6 9.2120 3.5132 3.0941 25 1 9.8998 3.0326 2.3985 26 6 9.0298 4.9822 2.7071 27 6 3.2502 3.6492 -0.0009 28 6 1.8768 3.5097 -0.0005 29 7 1.3185 2.3141 -0.0006 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0228 0.3697 -0.0106 34 1 5.8460 3.5420 -0.5154 35 1 5.9805 1.7671 -0.5151 36 1 8.0021 2.8119 0.9278 37 1 8.7534 0.8427 2.9608 38 1 7.0624 0.8565 3.5152 39 1 8.5891 0.3923 5.4028 40 1 7.7779 1.9612 5.6283 41 1 10.6031 1.5074 4.5621 42 1 10.1598 2.2231 6.1331 43 1 12.6318 3.3904 6.8061 44 1 9.9927 5.4912 2.7495 45 1 8.6307 5.0444 1.6947 46 1 8.3367 5.4575 3.4011 47 1 3.6990 4.6316 -0.0016 48 1 1.2514 4.3903 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993824179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:59 Heat of formation + Delta-G solvation = -43.480039 kcal Electronic energy + Delta-G solvation = -28770.176458 eV Core-core repulsion = 24824.981861 eV Total energy + Delta-G solvation = -3945.194597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72607 -40.92796 -39.37014 -38.71917 -35.87615 -34.77700 -34.21944 -33.39366 -31.71518 -31.21680 -29.48356 -28.08017 -27.62155 -26.81576 -24.48941 -24.10766 -22.91551 -22.31070 -21.38004 -20.96569 -18.91991 -18.36911 -18.12528 -17.91266 -17.26297 -16.95007 -16.88533 -16.62247 -16.19023 -15.63287 -15.55937 -15.33190 -15.18501 -15.00267 -14.75253 -14.52895 -14.32539 -14.16212 -13.76919 -13.37450 -13.28066 -13.14443 -12.86633 -12.81065 -12.68469 -12.52179 -12.46257 -12.33969 -12.15743 -12.00003 -11.80188 -11.76650 -11.60992 -11.18410 -11.03280 -10.66596 -10.52781 -10.48723 -9.95525 -9.47215 -8.65571 -7.85361 -5.29712 0.18495 0.26427 1.46537 1.49562 1.55978 1.72402 2.10828 2.25366 2.54643 2.84643 3.30024 3.36524 3.60198 3.64310 3.89878 3.97656 4.05467 4.11935 4.17414 4.21392 4.23648 4.37780 4.41622 4.44100 4.55171 4.57048 4.62398 4.64525 4.74834 4.79534 4.81960 4.89244 4.94816 4.96067 5.05123 5.13849 5.24722 5.31983 5.34442 5.48840 5.49584 5.51702 5.62866 5.71334 5.77262 6.25385 6.42067 6.67545 6.86563 7.16787 7.37266 7.88085 8.38886 9.21751 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.002343 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.446185 B =11945.133322 C =12299.669719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.296 3.704 4 C -0.191 4.191 5 C 0.007 3.993 6 C -0.095 4.095 7 C 0.514 3.486 8 O -0.584 6.584 9 N -0.706 5.706 10 C 0.149 3.851 11 H 0.054 0.946 12 C -0.109 4.109 13 C -0.131 4.131 14 C 0.176 3.824 15 N -0.601 5.601 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.959 3.041 21 H -0.290 1.290 22 H -0.268 1.268 23 H -0.296 1.296 24 C 0.164 3.836 25 H 0.036 0.964 26 C -0.128 4.128 27 C -0.198 4.198 28 C 0.128 3.872 29 N -0.560 5.560 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.005 0.995 42 H 0.052 0.948 43 H 0.248 0.752 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.160 0.840 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -2.970 -18.512 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.118 3.882 4 C -0.212 4.212 5 C -0.002 4.002 6 C -0.134 4.134 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.050 3.950 15 N -0.325 5.325 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.788 3.212 21 H -0.217 1.217 22 H -0.193 1.193 23 H -0.223 1.223 24 C 0.057 3.943 25 H 0.053 0.947 26 C -0.185 4.185 27 C -0.218 4.218 28 C -0.027 4.027 29 N -0.284 5.284 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.057 0.943 47 H 0.177 0.823 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.898 -3.364 -17.772 25.446 hybrid contribution 1.283 0.584 1.057 1.762 sum -16.614 -2.780 -16.715 23.731 Atomic orbital electron populations 1.23017 0.75985 1.04498 1.02107 1.86206 1.24322 1.24743 1.88066 1.20026 0.89871 0.85025 0.93265 1.21088 0.92009 0.99837 1.08260 1.19755 0.95857 0.92126 0.92412 1.20789 0.90351 1.09100 0.93168 1.20976 0.81936 0.75085 0.91827 1.90744 1.56387 1.51128 1.48124 1.45874 1.07353 1.74028 1.08507 1.21139 0.96093 0.95976 0.82637 0.92820 1.21678 1.00271 0.96611 0.96218 1.22024 0.98447 1.00123 0.96456 1.20617 0.91971 0.84659 0.97721 1.44279 1.73282 1.03267 1.11686 1.19439 1.12842 0.89514 1.16328 0.90936 1.25733 0.95866 0.99763 1.03191 1.70174 1.19509 1.32161 1.36059 0.85406 0.76160 0.79993 0.79653 1.21748 1.19272 1.22267 1.20654 0.91291 0.95606 0.86712 0.94659 1.21738 1.01035 0.95091 1.00652 1.22188 0.94782 1.00262 1.04540 1.22869 0.93583 0.93828 0.92408 1.67290 1.41585 0.99440 1.20116 0.86108 0.93074 0.92162 0.83729 0.83564 0.84389 0.74672 0.91356 0.92935 0.91167 0.94064 0.97643 0.92946 0.94278 0.93416 0.90051 0.94316 0.82253 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.33 -7.72 10.48 -89.93 -0.94 -8.66 16 3 C 0.30 7.41 7.49 84.80 0.63 8.04 16 4 C -0.19 -4.32 9.74 22.47 0.22 -4.10 16 5 C 0.01 0.13 4.41 -19.69 -0.09 0.04 16 6 C -0.09 -1.31 5.88 29.10 0.17 -1.14 16 7 C 0.51 12.39 7.79 87.66 0.68 13.07 16 8 O -0.58 -20.50 15.70 -3.05 -0.05 -20.55 16 9 N -0.71 -16.36 4.58 -442.84 -2.03 -18.39 16 10 C 0.15 4.94 1.97 44.92 0.09 5.03 16 11 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 12 C -0.11 -3.70 5.46 30.62 0.17 -3.53 16 13 C -0.13 -5.13 6.08 30.67 0.19 -4.94 16 14 C 0.18 8.40 5.30 86.36 0.46 8.85 16 15 N -0.60 -28.96 3.00 -676.05 -2.03 -30.98 16 16 C -0.25 -13.29 8.60 84.03 0.72 -12.57 16 17 H 0.07 3.74 6.20 -2.91 -0.02 3.72 16 18 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 19 N -0.93 -54.29 11.23 21.65 0.24 -54.05 16 20 Si 0.96 44.63 29.59 68.60 2.03 46.66 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.16 6.14 3.02 44.83 0.14 6.27 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 C -0.13 -4.30 7.82 71.98 0.56 -3.73 16 27 C -0.20 -3.56 9.81 22.37 0.22 -3.34 16 28 C 0.13 2.45 11.18 84.63 0.95 3.39 16 29 N -0.56 -13.36 9.22 -308.95 -2.85 -16.21 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.15 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.14 1.14 8.10 -2.38 -0.02 1.12 16 36 H 0.42 6.59 8.61 -92.70 -0.80 5.80 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.05 2.86 6.10 -2.39 -0.01 2.85 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.05 1.76 7.61 -2.39 -0.02 1.74 16 45 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 46 H 0.04 1.41 7.45 -2.39 -0.02 1.39 16 47 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 48 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -74.89 388.17 1.25 -73.64 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.16 Total: 17.70 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.70 Total: 10.82 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -6.66 Total: -119.63 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.99 Total: -29.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.89 1.25 -73.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993824179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.164 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds