Wall clock time and date at job start Tue Mar 31 2020 17:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46499 * 109.35763 * 305.61149 * 4 2 1 7 7 C 1.34777 * 119.99779 * 155.15806 * 6 4 2 8 8 O 1.21607 * 120.00561 * 0.02562 * 7 6 4 9 9 C 1.47424 * 119.99576 * 180.02562 * 7 6 4 10 10 C 1.36095 * 126.44420 * 180.02562 * 9 7 6 11 11 O 1.34259 * 106.94856 * 179.97438 * 10 9 7 12 12 C 1.34050 * 108.22485 * 359.97438 * 11 10 9 13 13 C 1.50699 * 125.37538 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47222 * 269.97136 * 13 12 11 15 15 C 1.53000 * 117.50049 * 243.74730 * 14 13 12 16 16 C 1.53006 * 117.50285 * 175.08722 * 14 13 12 17 17 N 1.29935 * 109.24382 * 359.74159 * 12 11 10 18 18 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 19 19 C 1.53043 * 109.54140 * 61.23858 * 18 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 18 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99319 * 29.57864 * 22 21 2 24 24 C 1.38810 * 120.00133 * 209.57896 * 22 21 2 25 25 N 1.31624 * 120.00100 * 15.53431 * 24 22 21 26 26 Si 1.86793 * 119.99873 * 195.53048 * 24 22 21 27 27 H 1.48502 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47257 * 299.99868 * 26 24 22 29 29 H 1.48501 * 109.47449 * 60.00426 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 0.97006 * 120.00201 * 335.16506 * 6 4 2 34 34 H 1.07996 * 126.52748 * 0.02562 * 10 9 7 35 35 H 1.08998 * 109.47364 * 29.97487 * 13 12 11 36 36 H 1.09006 * 109.47049 * 149.97120 * 13 12 11 37 37 H 1.09005 * 115.54925 * 29.42069 * 14 13 12 38 38 H 1.08994 * 117.50244 * 0.02562 * 15 14 13 39 39 H 1.09005 * 117.49755 * 145.01716 * 15 14 13 40 40 H 1.08997 * 117.50197 * 214.97961 * 16 14 13 41 41 H 1.08996 * 117.49045 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46284 * 301.21051 * 18 4 2 43 43 H 1.09005 * 109.44845 * 181.25310 * 18 4 2 44 44 H 1.08996 * 109.49796 * 178.68040 * 19 18 4 45 45 H 1.09000 * 109.52406 * 58.60257 * 19 18 4 46 46 H 1.08998 * 109.58588 * 294.84653 * 20 19 18 47 47 H 1.08997 * 109.70252 * 174.49039 * 20 19 18 48 48 H 0.96997 * 120.00116 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3103 7 6 1.3202 -2.6849 -2.4974 8 8 1.7041 -2.1405 -3.5148 9 6 0.7194 -4.0296 -2.5626 10 6 0.5320 -4.7779 -3.6838 11 8 -0.0413 -5.9281 -3.2954 12 6 -0.2021 -5.8881 -1.9652 13 6 -0.8102 -6.9827 -1.1266 14 6 -2.3203 -6.7625 -1.0177 15 6 -2.8950 -6.4819 0.3722 16 6 -3.1408 -7.8355 -0.2989 17 7 0.2545 -4.7590 -1.5124 18 6 3.5638 -0.8460 -1.1726 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3770 1.9102 24 6 1.5774 -1.1945 3.4879 25 7 2.6899 -0.5973 3.8596 26 14 0.5688 -2.1509 4.7358 27 1 1.2312 -2.0842 6.0632 28 1 -0.7903 -1.5600 4.8311 29 1 0.4633 -3.5682 4.3053 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1377 -2.4933 -0.4987 34 1 0.7952 -4.4998 -4.6936 35 1 -0.6165 -7.9483 -1.5936 36 1 -0.3678 -6.9655 -0.1305 37 1 -2.7842 -6.2581 -1.8654 38 1 -2.1972 -6.4536 1.2090 39 1 -3.7371 -5.7930 0.4389 40 1 -4.1444 -8.0367 -0.6734 41 1 -2.6046 -8.6984 0.0960 42 1 4.0058 0.1477 -1.0996 43 1 3.9312 -1.3415 -2.0713 44 1 5.0363 -1.7760 0.0965 45 1 3.4910 -2.6543 -0.0021 46 1 3.9928 -0.0049 1.4310 47 1 3.6506 -1.5776 2.1938 48 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994123800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:23 Heat of formation + Delta-G solvation = 27.044411 kcal Electronic energy + Delta-G solvation = -29792.318647 eV Core-core repulsion = 25850.182220 eV Total energy + Delta-G solvation = -3942.136427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44811 -39.61196 -37.83675 -37.53832 -34.85878 -33.89121 -32.37792 -31.94045 -31.55167 -29.40866 -28.02401 -26.31560 -25.01591 -24.13597 -22.59168 -22.17071 -21.80132 -20.94605 -20.72783 -20.12748 -18.65583 -18.09301 -16.84348 -16.58018 -16.37534 -15.96072 -15.35263 -14.87080 -14.74159 -14.51344 -14.46900 -13.90748 -13.66035 -13.62213 -13.39314 -13.08610 -12.99498 -12.92532 -12.53971 -12.01604 -11.82821 -11.72458 -11.31212 -11.21582 -11.16526 -10.94102 -10.76327 -10.67660 -10.64964 -10.59464 -10.49562 -10.27216 -10.09636 -9.99122 -9.83637 -9.62114 -9.28825 -9.05055 -8.51177 -8.40945 -6.64057 -5.77849 -3.22737 1.12283 2.05372 2.48328 3.38210 3.43255 3.44195 3.45237 3.53268 3.57262 3.85181 4.45815 4.48743 4.62473 4.68237 4.81653 4.90892 5.08886 5.25548 5.33092 5.33817 5.36415 5.42651 5.54835 5.58922 5.61991 5.64203 5.73528 5.76739 5.88271 5.94713 5.98138 6.06824 6.15801 6.25358 6.34237 6.44232 6.54311 6.69980 6.70927 6.80419 6.96037 6.99926 7.10584 7.40711 7.48371 7.68638 7.82256 8.06019 8.45671 8.57116 9.21626 9.84414 10.41552 11.30438 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.004693 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.711899 B = 5965.385957 C = 8274.784070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.132 3.868 5 H 0.078 0.922 6 N -0.678 5.678 7 C 0.593 3.407 8 O -0.554 6.554 9 C -0.062 4.062 10 C 0.000 4.000 11 O -0.199 6.199 12 C 0.197 3.803 13 C 0.008 3.992 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.175 4.175 17 N -0.445 5.445 18 C -0.121 4.121 19 C -0.141 4.141 20 C 0.172 3.828 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.292 1.292 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.229 0.771 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.018 0.982 47 H 0.085 0.915 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -11.944 -11.501 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.026 3.974 5 H 0.096 0.904 6 N -0.328 5.328 7 C 0.378 3.622 8 O -0.434 6.434 9 C -0.182 4.182 10 C -0.074 4.074 11 O -0.086 6.086 12 C -0.012 4.012 13 C -0.030 4.030 14 C -0.175 4.175 15 C -0.208 4.208 16 C -0.212 4.212 17 N -0.175 5.175 18 C -0.159 4.159 19 C -0.181 4.181 20 C 0.047 3.953 21 N -0.309 5.309 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.218 1.218 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.245 0.755 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.104 0.896 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.476 -11.345 -11.346 17.303 hybrid contribution -0.465 -0.741 0.307 0.927 sum -6.941 -12.086 -11.039 17.780 Atomic orbital electron populations 1.21795 0.95617 1.01564 1.00456 1.20625 0.93414 0.93943 0.86738 0.94195 1.21569 0.93037 0.82776 1.00059 0.90418 1.45880 1.59521 1.18383 1.09027 1.16792 0.78484 0.82565 0.84399 1.90767 1.51685 1.66226 1.34741 1.21993 1.07937 0.98662 0.89625 1.25220 0.97729 0.83263 1.01141 1.84364 1.60974 1.37129 1.26090 1.26132 0.99925 0.96431 0.78736 1.19700 0.92741 0.92421 0.98116 1.22127 0.92852 1.04947 0.97550 1.23123 1.03580 0.98670 0.95379 1.23020 1.01011 0.93132 1.04014 1.70875 1.12791 1.03103 1.30713 1.21773 0.95291 1.00533 0.98314 1.22151 0.98925 0.99638 0.97350 1.20783 0.83206 0.97110 0.94230 1.44126 1.03162 1.64803 1.18788 1.19098 0.95053 1.37924 0.86139 0.91307 1.25073 0.97798 0.99426 0.96943 1.70018 1.23960 1.43728 1.16781 0.86424 0.79622 0.80355 0.80676 1.21796 1.20960 1.20938 0.91692 0.94253 0.92686 0.74348 0.75522 0.88393 0.87104 0.87568 0.87968 0.88536 0.88591 0.88433 0.91752 0.93108 0.93456 0.92814 0.96375 0.89632 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.72 37.16 0.29 -2.29 16 2 C 0.16 3.25 3.18 -67.83 -0.22 3.03 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.13 2.44 2.32 -68.03 -0.16 2.28 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 6 N -0.68 -12.48 3.44 -54.98 -0.19 -12.67 16 7 C 0.59 10.61 7.78 -12.52 -0.10 10.51 16 8 O -0.55 -10.74 16.55 5.27 0.09 -10.65 16 9 C -0.06 -0.97 6.99 -83.02 -0.58 -1.56 16 10 C 0.00 0.00 11.95 29.96 0.36 0.36 16 11 O -0.20 -2.40 10.73 6.51 0.07 -2.33 16 12 C 0.20 2.48 7.51 -13.08 -0.10 2.38 16 13 C 0.01 0.07 6.12 -27.89 -0.17 -0.10 16 14 C -0.16 -1.37 5.72 -90.62 -0.52 -1.89 16 15 C -0.17 -1.55 10.18 -26.69 -0.27 -1.82 16 16 C -0.17 -1.25 10.26 -26.69 -0.27 -1.52 16 17 N -0.45 -6.97 11.06 -7.65 -0.08 -7.06 16 18 C -0.12 -2.20 5.58 -26.69 -0.15 -2.35 16 19 C -0.14 -2.78 5.93 -26.61 -0.16 -2.94 16 20 C 0.17 4.01 5.29 -3.71 -0.02 3.99 16 21 N -0.59 -13.80 2.65 -165.03 -0.44 -14.24 16 22 C -0.25 -6.50 8.57 -15.06 -0.13 -6.63 16 23 H 0.07 1.74 6.23 -52.49 -0.33 1.41 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 25 N -0.90 -25.44 11.23 55.49 0.62 -24.81 16 26 Si 0.90 21.18 29.58 -169.99 -5.03 16.16 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.06 1.30 7.62 -51.93 -0.40 0.91 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.06 6.36 -51.93 -0.33 0.73 16 33 H 0.42 8.28 7.47 -40.82 -0.30 7.98 16 34 H 0.23 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.00 7.88 -51.93 -0.41 0.59 16 37 H 0.11 0.99 8.07 -51.93 -0.42 0.57 16 38 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.05 1.10 7.53 -51.93 -0.39 0.71 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 2.24 6.14 -51.93 -0.32 1.92 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -30.24 387.30 -8.90 -39.14 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.49 Total: 9.08 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.28 Total: 1.56 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.09 Total: -58.78 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.16 Total: -12.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.24 -8.90 -39.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994123800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.181 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds