Wall clock time and date at job start Tue Mar 31 2020 17:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46499 * 109.35763 * 305.61149 * 4 2 1 7 7 C 1.34777 * 119.99779 * 155.15806 * 6 4 2 8 8 O 1.21607 * 120.00561 * 0.02562 * 7 6 4 9 9 C 1.47424 * 119.99576 * 180.02562 * 7 6 4 10 10 C 1.36095 * 126.44420 * 180.02562 * 9 7 6 11 11 O 1.34259 * 106.94856 * 179.97438 * 10 9 7 12 12 C 1.34050 * 108.22485 * 359.97438 * 11 10 9 13 13 C 1.50699 * 125.37538 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47222 * 269.97136 * 13 12 11 15 15 C 1.53000 * 117.50049 * 243.74730 * 14 13 12 16 16 C 1.53006 * 117.50285 * 175.08722 * 14 13 12 17 17 N 1.29935 * 109.24382 * 359.74159 * 12 11 10 18 18 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 19 19 C 1.53043 * 109.54140 * 61.23858 * 18 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 18 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99319 * 29.57864 * 22 21 2 24 24 C 1.38810 * 120.00133 * 209.57896 * 22 21 2 25 25 N 1.31624 * 120.00100 * 15.53431 * 24 22 21 26 26 Si 1.86793 * 119.99873 * 195.53048 * 24 22 21 27 27 H 1.48502 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47257 * 299.99868 * 26 24 22 29 29 H 1.48501 * 109.47449 * 60.00426 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 0.97006 * 120.00201 * 335.16506 * 6 4 2 34 34 H 1.07996 * 126.52748 * 0.02562 * 10 9 7 35 35 H 1.08998 * 109.47364 * 29.97487 * 13 12 11 36 36 H 1.09006 * 109.47049 * 149.97120 * 13 12 11 37 37 H 1.09005 * 115.54925 * 29.42069 * 14 13 12 38 38 H 1.08994 * 117.50244 * 0.02562 * 15 14 13 39 39 H 1.09005 * 117.49755 * 145.01716 * 15 14 13 40 40 H 1.08997 * 117.50197 * 214.97961 * 16 14 13 41 41 H 1.08996 * 117.49045 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46284 * 301.21051 * 18 4 2 43 43 H 1.09005 * 109.44845 * 181.25310 * 18 4 2 44 44 H 1.08996 * 109.49796 * 178.68040 * 19 18 4 45 45 H 1.09000 * 109.52406 * 58.60257 * 19 18 4 46 46 H 1.08998 * 109.58588 * 294.84653 * 20 19 18 47 47 H 1.08997 * 109.70252 * 174.49039 * 20 19 18 48 48 H 0.96997 * 120.00116 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3103 7 6 1.3202 -2.6849 -2.4974 8 8 1.7041 -2.1405 -3.5148 9 6 0.7194 -4.0296 -2.5626 10 6 0.5320 -4.7779 -3.6838 11 8 -0.0413 -5.9281 -3.2954 12 6 -0.2021 -5.8881 -1.9652 13 6 -0.8102 -6.9827 -1.1266 14 6 -2.3203 -6.7625 -1.0177 15 6 -2.8950 -6.4819 0.3722 16 6 -3.1408 -7.8355 -0.2989 17 7 0.2545 -4.7590 -1.5124 18 6 3.5638 -0.8460 -1.1726 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3770 1.9102 24 6 1.5774 -1.1945 3.4879 25 7 2.6899 -0.5973 3.8596 26 14 0.5688 -2.1509 4.7358 27 1 1.2312 -2.0842 6.0632 28 1 -0.7903 -1.5600 4.8311 29 1 0.4633 -3.5682 4.3053 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1377 -2.4933 -0.4987 34 1 0.7952 -4.4998 -4.6936 35 1 -0.6165 -7.9483 -1.5936 36 1 -0.3678 -6.9655 -0.1305 37 1 -2.7842 -6.2581 -1.8654 38 1 -2.1972 -6.4536 1.2090 39 1 -3.7371 -5.7930 0.4389 40 1 -4.1444 -8.0367 -0.6734 41 1 -2.6046 -8.6984 0.0960 42 1 4.0058 0.1477 -1.0996 43 1 3.9312 -1.3415 -2.0713 44 1 5.0363 -1.7760 0.0965 45 1 3.4910 -2.6543 -0.0021 46 1 3.9928 -0.0049 1.4310 47 1 3.6506 -1.5776 2.1938 48 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994123800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:22 Heat of formation + Delta-G solvation = 8.314934 kcal Electronic energy + Delta-G solvation = -29793.130818 eV Core-core repulsion = 25850.182220 eV Total energy + Delta-G solvation = -3942.948598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.46429 -41.09113 -39.14694 -38.47839 -35.94117 -35.60785 -34.01321 -33.38992 -32.79075 -31.12746 -28.96458 -27.95019 -26.87282 -25.41259 -23.64458 -23.22644 -22.91186 -22.41821 -21.92226 -21.23341 -20.27796 -19.27756 -18.27325 -17.83860 -17.62311 -17.10008 -16.76196 -16.47307 -16.18489 -15.79426 -15.60024 -15.23301 -15.11995 -14.82048 -14.70570 -14.55152 -14.44875 -14.24667 -13.76555 -13.56729 -12.97951 -12.89569 -12.76885 -12.71542 -12.47016 -12.36316 -12.33837 -12.25757 -12.20887 -11.95202 -11.82894 -11.69392 -11.40335 -11.32179 -11.22230 -11.04824 -10.89880 -10.48451 -10.15309 -9.87007 -8.60138 -7.81309 -5.27423 0.07910 0.95843 1.48846 1.50860 1.54589 1.56673 2.17465 2.26703 2.54307 2.81601 2.92924 3.34705 3.58366 3.67940 3.79207 3.80320 3.98518 4.02682 4.04360 4.11688 4.19284 4.27890 4.37350 4.46652 4.54472 4.61293 4.64510 4.68510 4.73055 4.76501 4.85504 4.91864 4.97109 5.00278 5.04231 5.09686 5.11461 5.19583 5.26155 5.30150 5.32323 5.43334 5.53667 5.59083 5.74012 5.78790 6.39011 6.45162 6.67378 7.14481 7.20738 7.89893 8.42884 9.25243 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.004693 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.711899 B = 5965.385957 C = 8274.784070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.038 0.962 4 C 0.139 3.861 5 H 0.087 0.913 6 N -0.682 5.682 7 C 0.595 3.405 8 O -0.572 6.572 9 C -0.101 4.101 10 C 0.028 3.972 11 O -0.191 6.191 12 C 0.205 3.795 13 C 0.009 3.991 14 C -0.161 4.161 15 C -0.192 4.192 16 C -0.151 4.151 17 N -0.482 5.482 18 C -0.114 4.114 19 C -0.127 4.127 20 C 0.180 3.820 21 N -0.597 5.597 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.046 4.046 25 N -0.934 5.934 26 Si 0.956 3.044 27 H -0.299 1.299 28 H -0.278 1.278 29 H -0.278 1.278 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.411 0.589 34 H 0.260 0.740 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.043 0.957 46 H -0.001 1.001 47 H 0.053 0.947 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 -13.745 -13.365 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.055 0.945 4 C 0.033 3.967 5 H 0.105 0.895 6 N -0.330 5.330 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.220 4.220 10 C -0.046 4.046 11 O -0.077 6.077 12 C -0.005 4.005 13 C -0.028 4.028 14 C -0.180 4.180 15 C -0.229 4.229 16 C -0.187 4.187 17 N -0.212 5.212 18 C -0.153 4.153 19 C -0.166 4.166 20 C 0.055 3.945 21 N -0.321 5.321 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.242 4.242 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.226 1.226 28 H -0.204 1.204 29 H -0.204 1.204 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.071 0.929 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.563 -13.146 -13.238 20.131 hybrid contribution -0.170 -0.195 0.814 0.855 sum -7.732 -13.341 -12.423 19.802 Atomic orbital electron populations 1.21692 0.94510 1.01293 1.00961 1.20762 0.94361 0.93685 0.86121 0.94454 1.21412 0.93129 0.83034 0.99101 0.89485 1.45851 1.59863 1.18258 1.09064 1.17006 0.77884 0.83222 0.83707 1.90744 1.52607 1.67010 1.34998 1.21824 1.10592 0.98547 0.91039 1.25764 0.95043 0.82303 1.01473 1.84413 1.60642 1.36761 1.25914 1.26769 0.98512 0.96176 0.79016 1.19920 0.92569 0.92613 0.97742 1.22089 0.92802 1.06168 0.96965 1.23147 1.03667 1.00624 0.95508 1.23115 1.01358 0.92449 1.01807 1.70829 1.14377 1.04455 1.31541 1.21725 0.95189 1.00801 0.97548 1.21951 0.99751 0.98740 0.96145 1.20560 0.83315 0.95851 0.94794 1.44292 1.03028 1.65395 1.19339 1.19352 0.95307 1.36455 0.86537 0.91022 1.25724 0.98968 1.00813 0.98672 1.70166 1.25659 1.45606 1.16557 0.85507 0.78374 0.79316 0.78261 1.22565 1.20371 1.20439 0.93262 0.91575 0.93314 0.75227 0.72471 0.85373 0.87261 0.88167 0.88878 0.89081 0.87406 0.86888 0.90777 0.92364 0.91767 0.93783 0.98248 0.92884 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.72 71.98 0.56 -4.16 16 2 C 0.16 6.32 3.18 44.83 0.14 6.46 16 3 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.14 5.02 2.32 44.93 0.10 5.12 16 5 H 0.09 3.02 7.58 -2.39 -0.02 3.00 16 6 N -0.68 -24.69 3.44 -446.12 -1.54 -26.22 16 7 C 0.60 20.70 7.78 86.66 0.67 21.38 16 8 O -0.57 -21.29 16.55 -4.05 -0.07 -21.35 16 9 C -0.10 -3.07 6.99 40.41 0.28 -2.78 16 10 C 0.03 0.64 11.95 67.32 0.80 1.45 16 11 O -0.19 -4.12 10.73 0.36 0.00 -4.12 16 12 C 0.20 4.81 7.51 88.39 0.66 5.47 16 13 C 0.01 0.15 6.12 29.85 0.18 0.33 16 14 C -0.16 -2.55 5.72 -10.79 -0.06 -2.61 16 15 C -0.19 -3.32 10.18 30.62 0.31 -3.01 16 16 C -0.15 -1.77 10.26 30.62 0.31 -1.46 16 17 N -0.48 -14.74 11.06 -293.04 -3.24 -17.98 16 18 C -0.11 -4.02 5.58 30.62 0.17 -3.85 16 19 C -0.13 -4.95 5.93 30.67 0.18 -4.77 16 20 C 0.18 8.60 5.29 86.36 0.46 9.06 16 21 N -0.60 -28.52 2.65 -676.05 -1.79 -30.31 16 22 C -0.25 -12.85 8.57 84.03 0.72 -12.13 16 23 H 0.07 3.65 6.23 -2.91 -0.02 3.63 16 24 C -0.05 -2.53 4.94 84.86 0.42 -2.11 16 25 N -0.93 -54.32 11.23 21.65 0.24 -54.07 16 26 Si 0.96 44.32 29.58 68.60 2.03 46.35 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 30 H 0.05 1.96 7.62 -2.39 -0.02 1.94 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.86 6.36 -2.39 -0.02 1.84 16 33 H 0.41 16.32 7.47 -92.70 -0.69 15.62 16 34 H 0.26 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.82 7.88 -2.38 -0.02 1.80 16 37 H 0.10 1.71 8.07 -2.38 -0.02 1.69 16 38 H 0.09 1.75 8.03 -2.39 -0.02 1.73 16 39 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.80 7.53 -2.39 -0.02 1.79 16 46 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.05 2.88 6.14 -2.39 -0.01 2.86 16 48 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -65.94 387.30 1.84 -64.10 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.28 Total: 31.22 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.92 Total: 12.40 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -6.32 Total: -128.59 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.06 Total: -25.47 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.94 1.84 -64.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994123800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.412 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds