Wall clock time and date at job start Tue Mar 31 2020 17:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58854 * 2 1 4 4 C 1.53195 * 109.58787 * 120.28092 * 2 1 3 5 5 H 1.09004 * 109.49169 * 54.44094 * 4 2 1 6 6 N 1.46492 * 109.49933 * 294.37547 * 4 2 1 7 7 C 1.34780 * 120.00220 * 154.99907 * 6 4 2 8 8 O 1.21608 * 119.99837 * 359.97438 * 7 6 4 9 9 C 1.47413 * 119.99875 * 179.97438 * 7 6 4 10 10 C 1.36095 * 126.44781 * 179.97438 * 9 7 6 11 11 O 1.34253 * 106.95115 * 179.79448 * 10 9 7 12 12 C 1.34046 * 108.22869 * 0.36364 * 11 10 9 13 13 C 1.50699 * 125.38249 * 179.88802 * 12 11 10 14 14 C 1.52994 * 109.47579 * 269.69576 * 13 12 11 15 15 C 1.53001 * 117.51928 * 116.28011 * 14 13 12 16 16 C 1.53000 * 60.00052 * 107.48318 * 15 14 13 17 17 N 1.29936 * 109.24312 * 359.62729 * 12 11 10 18 18 C 1.53043 * 109.31214 * 174.42171 * 4 2 1 19 19 C 1.53039 * 109.53663 * 298.63577 * 18 4 2 20 20 C 1.53191 * 109.31593 * 61.36790 * 19 18 4 21 21 N 1.46928 * 108.77316 * 305.36272 * 20 19 18 22 22 C 1.36935 * 120.63010 * 233.62657 * 21 20 19 23 23 H 1.07996 * 119.99729 * 150.14182 * 22 21 20 24 24 C 1.38803 * 120.00339 * 330.14419 * 22 21 20 25 25 N 1.31624 * 119.99923 * 344.50021 * 24 22 21 26 26 Si 1.86802 * 120.00378 * 164.49744 * 24 22 21 27 27 H 1.48500 * 109.46988 * 90.00197 * 26 24 22 28 28 H 1.48499 * 109.47322 * 210.00224 * 26 24 22 29 29 H 1.48496 * 109.47045 * 330.00315 * 26 24 22 30 30 H 1.09002 * 109.47122 * 299.71852 * 1 2 3 31 31 H 1.08994 * 109.47144 * 59.72160 * 1 2 3 32 32 H 1.09003 * 109.47023 * 179.71659 * 1 2 3 33 33 H 0.97008 * 119.99976 * 335.00016 * 6 4 2 34 34 H 1.08001 * 126.52408 * 359.97438 * 10 9 7 35 35 H 1.09005 * 109.46892 * 149.69039 * 13 12 11 36 36 H 1.09004 * 109.46722 * 29.69956 * 13 12 11 37 37 H 1.09002 * 115.55057 * 330.58145 * 14 13 12 38 38 H 1.08999 * 117.50163 * 214.97230 * 15 14 13 39 39 H 1.09000 * 117.49821 * 359.97438 * 15 14 13 40 40 H 1.08997 * 117.50218 * 252.51273 * 16 15 14 41 41 H 1.09006 * 117.49960 * 107.48542 * 16 15 14 42 42 H 1.09002 * 109.45797 * 58.65459 * 18 4 2 43 43 H 1.08997 * 109.46005 * 178.61817 * 18 4 2 44 44 H 1.08997 * 109.50137 * 301.41275 * 19 18 4 45 45 H 1.09007 * 109.52318 * 181.33426 * 19 18 4 46 46 H 1.09001 * 109.59001 * 185.57676 * 20 19 18 47 47 H 1.09003 * 109.58820 * 65.14774 * 20 19 18 48 48 H 0.97006 * 119.99864 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.6025 -1.7235 1.2938 6 7 1.6706 0.0298 2.4434 7 6 1.5472 -0.6003 3.6285 8 8 1.7452 -1.7978 3.7039 9 6 1.1724 0.1622 4.8332 10 6 1.0114 -0.3375 6.0888 11 8 0.6759 0.6936 6.8804 12 6 0.6237 1.8010 6.1269 13 6 0.2799 3.1807 6.6262 14 6 -1.2302 3.4008 6.5176 15 6 -2.0090 3.6125 7.8175 16 6 -1.7689 4.7890 6.8693 17 7 0.9219 1.4980 4.8991 18 6 3.5675 -0.8465 1.1712 19 6 3.9569 -1.6658 -0.0614 20 6 3.4651 -0.9487 -1.3225 21 7 2.0225 -0.7011 -1.1936 22 6 1.1536 -1.1162 -2.1671 23 1 0.1399 -1.3833 -1.9079 24 6 1.5758 -1.1938 -3.4871 25 7 2.6863 -0.5931 -3.8593 26 14 0.5681 -2.1506 -4.7355 27 1 -0.4261 -1.2461 -5.3669 28 1 1.4682 -2.7029 -5.7796 29 1 -0.1389 -3.2635 -4.0524 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.5123 0.9850 2.3832 34 1 1.1335 -1.3671 6.3914 35 1 0.7999 3.9253 6.0234 36 1 0.5873 3.2773 7.6675 37 1 -1.7283 2.8560 5.7155 38 1 -3.0194 3.2069 7.8706 39 1 -1.4456 3.5945 8.7504 40 1 -1.0475 5.5454 7.1783 41 1 -2.6214 5.1575 6.2985 42 1 4.0061 0.1488 1.0991 43 1 3.9379 -1.3422 2.0685 44 1 3.4983 -2.6528 -0.0019 45 1 5.0412 -1.7702 -0.1017 46 1 3.6518 -1.5746 -2.1952 47 1 3.9903 0.0002 -1.4317 48 1 2.9816 -0.6476 -4.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994123807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:26 Heat of formation + Delta-G solvation = 24.790926 kcal Electronic energy + Delta-G solvation = -28721.034749 eV Core-core repulsion = 24778.800603 eV Total energy + Delta-G solvation = -3942.234146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.62382 -39.61034 -38.03598 -37.58561 -35.05629 -34.25796 -32.54670 -32.09347 -31.58091 -29.26678 -28.17250 -26.30457 -25.05336 -24.19758 -22.83773 -22.34004 -21.80415 -20.90000 -20.64139 -20.25022 -19.42822 -18.11899 -17.01103 -16.60994 -16.34526 -16.18411 -15.65565 -14.91271 -14.81008 -14.56545 -14.40745 -14.29330 -13.80382 -13.72132 -13.48457 -13.31949 -13.06473 -12.77915 -12.52739 -12.18770 -11.95305 -11.70314 -11.51524 -11.43976 -11.07450 -11.01029 -10.90986 -10.84639 -10.71920 -10.55567 -10.48618 -10.27928 -10.17847 -10.03092 -10.01890 -9.65979 -9.36436 -9.20898 -8.64055 -8.43290 -6.64412 -5.77890 -3.22291 0.96932 1.85068 2.33214 3.19012 3.31286 3.38306 3.38880 3.45747 3.48581 3.71101 4.23668 4.39275 4.48811 4.52049 4.60342 4.76559 4.83906 5.11174 5.16470 5.22160 5.31756 5.36199 5.42033 5.45996 5.49649 5.54178 5.62150 5.67510 5.73110 5.81763 5.88543 5.99911 6.11991 6.24949 6.36479 6.45796 6.55696 6.64465 6.73256 6.77830 6.86882 7.01724 7.09296 7.27606 7.41704 7.68179 7.79208 7.83752 8.35888 8.47320 9.22003 9.84581 10.41559 11.30934 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.002508 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.767106 B =11163.211410 C =12029.369461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.088 0.912 6 N -0.697 5.697 7 C 0.597 3.403 8 O -0.541 6.541 9 C -0.065 4.065 10 C 0.006 3.994 11 O -0.196 6.196 12 C 0.199 3.801 13 C 0.008 3.992 14 C -0.156 4.156 15 C -0.179 4.179 16 C -0.171 4.171 17 N -0.455 5.455 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.230 0.770 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.019 0.981 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 8.450 23.493 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.024 3.976 5 H 0.106 0.894 6 N -0.346 5.346 7 C 0.381 3.619 8 O -0.418 6.418 9 C -0.185 4.185 10 C -0.067 4.067 11 O -0.082 6.082 12 C -0.011 4.011 13 C -0.029 4.029 14 C -0.175 4.175 15 C -0.216 4.216 16 C -0.208 4.208 17 N -0.185 5.185 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.246 0.754 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.038 0.962 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.360 8.032 22.831 24.592 hybrid contribution -0.478 -0.593 -0.207 0.789 sum -4.838 7.439 22.624 24.302 Atomic orbital electron populations 1.21821 0.95647 1.01668 1.00310 1.20551 0.93287 0.93598 0.86527 0.95374 1.21875 0.95259 0.96832 0.83616 0.89431 1.45965 1.68163 1.12795 1.07700 1.16742 0.77396 0.85941 0.81783 1.90818 1.51875 1.13756 1.85383 1.21972 1.10143 0.90378 0.95993 1.25290 0.99500 0.93043 0.88895 1.84379 1.66498 1.16811 1.40518 1.26108 1.00117 0.90090 0.84740 1.19691 0.95188 0.85361 1.02699 1.22203 0.93408 1.01394 1.00498 1.23118 1.01756 1.02721 0.93962 1.23004 1.03467 0.91042 1.03241 1.70787 1.15834 1.12643 1.19235 1.21766 0.95231 1.00168 0.98389 1.22184 0.99245 0.99691 0.96839 1.20832 0.83128 0.97212 0.94404 1.44032 1.03142 1.64983 1.18321 1.19144 0.95196 1.37727 0.86023 0.91256 1.25086 0.97896 0.99515 0.96951 1.70033 1.24093 1.43787 1.16693 0.86319 0.79383 0.80014 0.81194 1.21415 1.21590 1.20448 0.94241 0.91728 0.92686 0.76011 0.75355 0.86829 0.88610 0.87082 0.88591 0.88435 0.88315 0.88316 0.92668 0.93172 0.92473 0.92958 0.89451 0.96240 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.84 37.16 0.29 -2.36 16 2 C 0.17 3.49 3.03 -67.60 -0.21 3.29 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.13 2.45 2.00 -67.81 -0.14 2.31 16 5 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 6 N -0.70 -11.39 4.57 -54.77 -0.25 -11.64 16 7 C 0.60 9.84 7.78 -12.52 -0.10 9.74 16 8 O -0.54 -10.32 16.55 5.27 0.09 -10.23 16 9 C -0.06 -0.89 6.99 -83.02 -0.58 -1.47 16 10 C 0.01 0.07 11.95 29.96 0.36 0.43 16 11 O -0.20 -2.03 10.73 6.53 0.07 -1.96 16 12 C 0.20 2.03 7.51 -13.08 -0.10 1.93 16 13 C 0.01 0.05 6.12 -27.89 -0.17 -0.12 16 14 C -0.16 -1.02 5.72 -90.62 -0.52 -1.54 16 15 C -0.18 -0.95 10.18 -26.73 -0.27 -1.22 16 16 C -0.17 -0.87 10.25 -26.73 -0.27 -1.15 16 17 N -0.45 -5.80 11.06 -7.66 -0.08 -5.89 16 18 C -0.12 -2.17 5.46 -26.69 -0.15 -2.32 16 19 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 20 C 0.17 4.05 5.28 -3.71 -0.02 4.04 16 21 N -0.58 -14.36 2.99 -164.77 -0.49 -14.85 16 22 C -0.25 -6.75 8.58 -15.06 -0.13 -6.88 16 23 H 0.07 1.83 6.23 -52.49 -0.33 1.50 16 24 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 25 N -0.90 -25.92 11.23 55.49 0.62 -25.30 16 26 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.04 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.06 1.32 7.67 -51.93 -0.40 0.92 16 32 H 0.05 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.40 6.08 8.33 -40.82 -0.34 5.74 16 34 H 0.23 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.43 7.88 -51.93 -0.41 0.02 16 37 H 0.11 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 2.32 6.15 -51.93 -0.32 2.00 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -31.65 390.64 -9.03 -40.68 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.60 Total: 4.92 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.25 Total: 1.76 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.20 Total: -57.68 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.16 Total: -12.19 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.65 -9.03 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994123807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds