Wall clock time and date at job start Tue Mar 31 2020 17:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58854 * 2 1 4 4 C 1.53195 * 109.58787 * 120.28092 * 2 1 3 5 5 H 1.09004 * 109.49169 * 54.44094 * 4 2 1 6 6 N 1.46492 * 109.49933 * 294.37547 * 4 2 1 7 7 C 1.34780 * 120.00220 * 154.99907 * 6 4 2 8 8 O 1.21608 * 119.99837 * 359.97438 * 7 6 4 9 9 C 1.47413 * 119.99875 * 179.97438 * 7 6 4 10 10 C 1.36095 * 126.44781 * 179.97438 * 9 7 6 11 11 O 1.34253 * 106.95115 * 179.79448 * 10 9 7 12 12 C 1.34046 * 108.22869 * 0.36364 * 11 10 9 13 13 C 1.50699 * 125.38249 * 179.88802 * 12 11 10 14 14 C 1.52994 * 109.47579 * 269.69576 * 13 12 11 15 15 C 1.53001 * 117.51928 * 116.28011 * 14 13 12 16 16 C 1.53000 * 60.00052 * 107.48318 * 15 14 13 17 17 N 1.29936 * 109.24312 * 359.62729 * 12 11 10 18 18 C 1.53043 * 109.31214 * 174.42171 * 4 2 1 19 19 C 1.53039 * 109.53663 * 298.63577 * 18 4 2 20 20 C 1.53191 * 109.31593 * 61.36790 * 19 18 4 21 21 N 1.46928 * 108.77316 * 305.36272 * 20 19 18 22 22 C 1.36935 * 120.63010 * 233.62657 * 21 20 19 23 23 H 1.07996 * 119.99729 * 150.14182 * 22 21 20 24 24 C 1.38803 * 120.00339 * 330.14419 * 22 21 20 25 25 N 1.31624 * 119.99923 * 344.50021 * 24 22 21 26 26 Si 1.86802 * 120.00378 * 164.49744 * 24 22 21 27 27 H 1.48500 * 109.46988 * 90.00197 * 26 24 22 28 28 H 1.48499 * 109.47322 * 210.00224 * 26 24 22 29 29 H 1.48496 * 109.47045 * 330.00315 * 26 24 22 30 30 H 1.09002 * 109.47122 * 299.71852 * 1 2 3 31 31 H 1.08994 * 109.47144 * 59.72160 * 1 2 3 32 32 H 1.09003 * 109.47023 * 179.71659 * 1 2 3 33 33 H 0.97008 * 119.99976 * 335.00016 * 6 4 2 34 34 H 1.08001 * 126.52408 * 359.97438 * 10 9 7 35 35 H 1.09005 * 109.46892 * 149.69039 * 13 12 11 36 36 H 1.09004 * 109.46722 * 29.69956 * 13 12 11 37 37 H 1.09002 * 115.55057 * 330.58145 * 14 13 12 38 38 H 1.08999 * 117.50163 * 214.97230 * 15 14 13 39 39 H 1.09000 * 117.49821 * 359.97438 * 15 14 13 40 40 H 1.08997 * 117.50218 * 252.51273 * 16 15 14 41 41 H 1.09006 * 117.49960 * 107.48542 * 16 15 14 42 42 H 1.09002 * 109.45797 * 58.65459 * 18 4 2 43 43 H 1.08997 * 109.46005 * 178.61817 * 18 4 2 44 44 H 1.08997 * 109.50137 * 301.41275 * 19 18 4 45 45 H 1.09007 * 109.52318 * 181.33426 * 19 18 4 46 46 H 1.09001 * 109.59001 * 185.57676 * 20 19 18 47 47 H 1.09003 * 109.58820 * 65.14774 * 20 19 18 48 48 H 0.97006 * 119.99864 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.6025 -1.7235 1.2938 6 7 1.6706 0.0298 2.4434 7 6 1.5472 -0.6003 3.6285 8 8 1.7452 -1.7978 3.7039 9 6 1.1724 0.1622 4.8332 10 6 1.0114 -0.3375 6.0888 11 8 0.6759 0.6936 6.8804 12 6 0.6237 1.8010 6.1269 13 6 0.2799 3.1807 6.6262 14 6 -1.2302 3.4008 6.5176 15 6 -2.0090 3.6125 7.8175 16 6 -1.7689 4.7890 6.8693 17 7 0.9219 1.4980 4.8991 18 6 3.5675 -0.8465 1.1712 19 6 3.9569 -1.6658 -0.0614 20 6 3.4651 -0.9487 -1.3225 21 7 2.0225 -0.7011 -1.1936 22 6 1.1536 -1.1162 -2.1671 23 1 0.1399 -1.3833 -1.9079 24 6 1.5758 -1.1938 -3.4871 25 7 2.6863 -0.5931 -3.8593 26 14 0.5681 -2.1506 -4.7355 27 1 -0.4261 -1.2461 -5.3669 28 1 1.4682 -2.7029 -5.7796 29 1 -0.1389 -3.2635 -4.0524 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.5123 0.9850 2.3832 34 1 1.1335 -1.3671 6.3914 35 1 0.7999 3.9253 6.0234 36 1 0.5873 3.2773 7.6675 37 1 -1.7283 2.8560 5.7155 38 1 -3.0194 3.2069 7.8706 39 1 -1.4456 3.5945 8.7504 40 1 -1.0475 5.5454 7.1783 41 1 -2.6214 5.1575 6.2985 42 1 4.0061 0.1488 1.0991 43 1 3.9379 -1.3422 2.0685 44 1 3.4983 -2.6528 -0.0019 45 1 5.0412 -1.7702 -0.1017 46 1 3.6518 -1.5746 -2.1952 47 1 3.9903 0.0002 -1.4317 48 1 2.9816 -0.6476 -4.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994123807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:25 Heat of formation + Delta-G solvation = 3.940603 kcal Electronic energy + Delta-G solvation = -28721.938887 eV Core-core repulsion = 24778.800603 eV Total energy + Delta-G solvation = -3943.138284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.48839 -41.02799 -39.22902 -38.46679 -36.05607 -35.83375 -34.24859 -33.42905 -32.81559 -30.99057 -28.95241 -27.95597 -26.92408 -25.46549 -23.61814 -23.18579 -22.86098 -22.34246 -21.67799 -21.39162 -21.00225 -19.27633 -18.27759 -17.85026 -17.52057 -17.34362 -16.81283 -16.59906 -16.02974 -15.72349 -15.62435 -15.29691 -15.14837 -14.95945 -14.88220 -14.64314 -14.51298 -14.28597 -13.62964 -13.36925 -13.27488 -12.81497 -12.76153 -12.71871 -12.53604 -12.41863 -12.31914 -12.28687 -12.04037 -11.94029 -11.83652 -11.79438 -11.68217 -11.35648 -11.26771 -11.10695 -10.90399 -10.53447 -10.21050 -9.95222 -8.65658 -7.86099 -5.32671 0.04942 0.91751 1.46322 1.48586 1.53705 1.57630 2.01205 2.20365 2.52679 2.71271 2.99294 3.29594 3.56423 3.68165 3.74106 3.82377 3.88171 4.00677 4.02611 4.12598 4.19060 4.24243 4.33750 4.47813 4.51923 4.55494 4.59249 4.70787 4.72078 4.81258 4.86749 4.86833 4.88786 5.00345 5.02369 5.11241 5.12027 5.18065 5.24733 5.28864 5.31980 5.39455 5.44263 5.55960 5.70168 5.75203 6.29506 6.41593 6.58824 7.07502 7.16347 7.85152 8.37826 9.21145 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.002508 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.767106 B =11163.211410 C =12029.369461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.029 0.971 4 C 0.146 3.854 5 H 0.065 0.935 6 N -0.692 5.692 7 C 0.599 3.401 8 O -0.571 6.571 9 C -0.097 4.097 10 C 0.028 3.972 11 O -0.191 6.191 12 C 0.208 3.792 13 C 0.011 3.989 14 C -0.170 4.170 15 C -0.176 4.176 16 C -0.164 4.164 17 N -0.480 5.480 18 C -0.109 4.109 19 C -0.128 4.128 20 C 0.176 3.824 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.071 0.929 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.273 1.273 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.413 0.587 34 H 0.255 0.745 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.003 0.997 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 9.273 26.116 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.047 0.953 4 C 0.040 3.960 5 H 0.083 0.917 6 N -0.342 5.342 7 C 0.386 3.614 8 O -0.451 6.451 9 C -0.216 4.216 10 C -0.046 4.046 11 O -0.077 6.077 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.189 4.189 15 C -0.213 4.213 16 C -0.201 4.201 17 N -0.210 5.210 18 C -0.148 4.148 19 C -0.168 4.168 20 C 0.050 3.950 21 N -0.323 5.323 22 C -0.385 4.385 23 H 0.089 0.911 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.791 3.209 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.198 1.198 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.249 0.751 34 H 0.271 0.729 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.021 0.979 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.995 8.880 25.479 27.441 hybrid contribution -0.332 -0.783 -0.912 1.247 sum -5.327 8.097 24.567 26.410 Atomic orbital electron populations 1.21714 0.94572 1.01131 1.01009 1.20669 0.94216 0.93338 0.85892 0.95324 1.21414 0.95249 0.95556 0.83790 0.91728 1.45777 1.68370 1.12932 1.07088 1.17022 0.76396 0.85698 0.82278 1.90796 1.53257 1.15111 1.85935 1.21639 1.13116 0.91128 0.95735 1.25744 0.96898 0.93985 0.87972 1.84430 1.66237 1.16783 1.40243 1.26851 0.98168 0.91040 0.84071 1.19930 0.95164 0.83279 1.04266 1.22100 0.93390 1.02598 1.00786 1.23210 1.01624 1.02426 0.93993 1.23091 1.03512 0.90779 1.02681 1.70744 1.17269 1.12239 1.20700 1.21690 0.94969 1.00355 0.97778 1.22018 1.00487 0.98782 0.95502 1.20648 0.83073 0.96145 0.95117 1.44263 1.03235 1.65686 1.19090 1.19421 0.95525 1.36906 0.86638 0.91111 1.25788 0.99117 1.00743 0.98686 1.70174 1.25682 1.45351 1.16678 0.85358 0.77923 0.78796 0.78866 1.21066 1.21962 1.19837 0.91448 0.93064 0.93744 0.75106 0.72915 0.85960 0.86023 0.89221 0.88841 0.87052 0.86806 0.88455 0.91861 0.92355 0.93351 0.90670 0.92561 0.97854 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 7.84 71.98 0.56 -4.31 16 2 C 0.17 6.89 3.03 44.97 0.14 7.03 16 3 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.15 5.47 2.00 45.07 0.09 5.56 16 5 H 0.06 2.76 7.58 -2.39 -0.02 2.74 16 6 N -0.69 -22.07 4.57 -445.44 -2.04 -24.11 16 7 C 0.60 19.27 7.78 86.66 0.67 19.94 16 8 O -0.57 -21.47 16.55 -4.05 -0.07 -21.53 16 9 C -0.10 -2.54 6.99 40.41 0.28 -2.26 16 10 C 0.03 0.57 11.95 67.32 0.80 1.37 16 11 O -0.19 -3.47 10.73 0.46 0.00 -3.46 16 12 C 0.21 3.81 7.51 88.39 0.66 4.47 16 13 C 0.01 0.11 6.12 29.85 0.18 0.30 16 14 C -0.17 -1.89 5.72 -10.79 -0.06 -1.95 16 15 C -0.18 -1.46 10.18 30.59 0.31 -1.15 16 16 C -0.16 -1.30 10.25 30.59 0.31 -0.99 16 17 N -0.48 -11.54 11.06 -293.04 -3.24 -14.78 16 18 C -0.11 -3.97 5.46 30.62 0.17 -3.81 16 19 C -0.13 -5.11 6.08 30.67 0.19 -4.92 16 20 C 0.18 8.58 5.28 86.36 0.46 9.04 16 21 N -0.60 -30.08 2.99 -675.23 -2.02 -32.09 16 22 C -0.25 -13.88 8.58 84.03 0.72 -13.16 16 23 H 0.07 3.77 6.23 -2.91 -0.02 3.75 16 24 C -0.05 -2.67 4.94 84.86 0.42 -2.25 16 25 N -0.93 -55.02 11.23 21.65 0.24 -54.78 16 26 Si 0.96 45.20 29.58 68.60 2.03 47.23 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 30 H 0.07 2.17 7.79 -2.39 -0.02 2.16 16 31 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 32 H 0.04 1.78 7.40 -2.39 -0.02 1.76 16 33 H 0.41 11.98 8.33 -92.70 -0.77 11.20 16 34 H 0.26 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.12 0.64 7.88 -2.38 -0.02 0.62 16 37 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.62 8.03 -2.39 -0.02 0.60 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 46 H 0.06 3.09 6.15 -2.39 -0.01 3.08 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -69.17 390.64 1.03 -68.15 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.20 Total: 22.45 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.91 Total: 12.92 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -7.05 Total: -125.75 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.17 1.03 -68.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994123807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.087 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds