Wall clock time and date at job start Tue Mar 31 2020 17:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50022 * 2 1 4 4 C 1.52758 * 109.58862 * 240.04883 * 2 1 3 5 5 N 1.46927 * 109.00682 * 185.53961 * 4 2 1 6 6 C 1.34784 * 120.62995 * 233.58186 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72079 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71961 * 6 5 4 9 9 C 1.53001 * 109.47168 * 179.97438 * 8 6 5 10 10 N 1.46504 * 109.47415 * 179.97438 * 9 8 6 11 11 C 1.35766 * 119.61986 * 89.99983 * 10 9 8 12 12 C 1.35345 * 120.69825 * 180.02562 * 11 10 9 13 13 C 1.40196 * 119.95217 * 359.97438 * 12 11 10 14 14 C 1.36398 * 119.26157 * 359.97438 * 13 12 11 15 15 C 1.34650 * 119.62616 * 269.73462 * 10 9 8 16 16 O 1.22064 * 119.98687 * 359.96807 * 15 10 9 17 17 C 1.46923 * 118.73985 * 53.30967 * 5 4 2 18 18 C 1.53194 * 108.77322 * 306.63925 * 17 5 4 19 19 C 1.53039 * 109.49681 * 120.06753 * 2 1 3 20 20 H 1.09000 * 109.45771 * 61.32818 * 19 2 1 21 21 N 1.46502 * 109.44628 * 301.35789 * 19 2 1 22 22 C 1.36940 * 119.99848 * 154.93657 * 21 19 2 23 23 H 1.08003 * 119.99593 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00404 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99494 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00307 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47103 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47258 * 119.99934 * 26 24 22 29 29 H 1.48496 * 109.46984 * 239.99902 * 26 24 22 30 30 H 1.09000 * 109.47013 * 299.93505 * 1 2 3 31 31 H 1.09004 * 109.46826 * 59.93342 * 1 2 3 32 32 H 1.08994 * 109.47695 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.51509 * 65.65348 * 4 2 1 34 34 H 1.09007 * 109.43462 * 305.37306 * 4 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 36 36 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 37 37 H 1.09000 * 109.47339 * 299.99895 * 9 8 6 38 38 H 1.09002 * 109.46926 * 60.00175 * 9 8 6 39 39 H 1.08003 * 119.65196 * 0.02562 * 11 10 9 40 40 H 1.08005 * 120.02719 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.36907 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.34932 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.59009 * 66.42846 * 17 5 4 44 44 H 1.09006 * 109.58796 * 186.85605 * 17 5 4 45 45 H 1.08996 * 109.49478 * 174.58662 * 18 17 5 46 46 H 1.08997 * 109.50001 * 294.65599 * 18 17 5 47 47 H 0.96996 * 120.00273 * 334.94303 * 21 19 2 48 48 H 0.96999 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8284 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4985 -2.0795 9 6 6.4199 0.0738 -3.3467 10 7 7.8777 -0.0364 -3.2515 11 6 8.4978 -1.1525 -3.7132 12 6 9.8433 -1.2775 -3.6357 13 6 10.6108 -0.2472 -3.0745 14 6 9.9861 0.8737 -2.6122 15 6 8.5877 0.9726 -2.7121 16 8 8.0163 1.9720 -2.3064 17 6 4.1058 -1.4256 0.0315 18 6 3.5708 -0.6940 1.2666 19 6 2.0408 -0.7228 1.2485 20 1 1.6971 -1.7571 1.2354 21 7 1.5259 -0.0524 2.4451 22 6 1.3944 -0.7488 3.6169 23 1 1.6707 -1.7920 3.6589 24 6 0.9061 -0.1139 4.7506 25 7 0.5699 1.1577 4.6993 26 14 0.7274 -1.0635 6.3491 27 1 1.1709 -2.4659 6.1440 28 1 1.5638 -0.4279 7.3987 29 1 -0.6951 -1.0521 6.7753 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7652 -0.1497 -2.1346 34 1 1.6031 -1.7150 -1.2974 35 1 6.1324 0.0595 -1.2115 36 1 6.0600 -1.5471 -1.9745 37 1 6.0689 -0.4846 -4.2145 38 1 6.1414 1.1223 -3.4522 39 1 7.9113 -1.9490 -4.1468 40 1 10.3253 -2.1703 -4.0059 41 1 11.6849 -0.3401 -3.0089 42 1 10.5602 1.6782 -2.1770 43 1 3.8385 -2.4808 0.0875 44 1 5.1902 -1.3231 -0.0127 45 1 3.9333 -1.1885 2.1677 46 1 3.9159 0.3398 1.2549 47 1 1.2781 0.8846 2.4073 48 1 0.2283 1.6013 5.4914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036059050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:02 Heat of formation + Delta-G solvation = -27.064280 kcal Electronic energy + Delta-G solvation = -28720.712664 eV Core-core repulsion = 24776.229908 eV Total energy + Delta-G solvation = -3944.482756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65589 -40.17985 -37.82655 -37.14589 -35.36377 -34.67557 -32.99981 -31.59787 -31.27135 -30.11104 -29.34042 -26.89814 -25.46862 -24.66098 -23.93257 -22.87389 -22.33975 -21.67038 -19.90208 -18.94207 -18.08975 -17.61675 -17.11704 -16.92345 -16.43301 -16.24559 -15.72030 -15.45484 -15.02731 -14.75214 -14.45444 -14.12982 -13.98063 -13.78853 -13.59184 -13.33413 -13.04732 -12.77008 -12.66398 -12.46119 -12.30262 -12.27052 -12.04017 -11.75326 -11.62238 -11.49444 -11.20188 -10.97094 -10.83985 -10.68178 -10.49716 -10.42395 -10.18530 -10.17923 -9.84929 -9.74056 -9.64717 -8.93472 -8.54802 -8.29607 -6.98946 -5.79700 -3.08662 0.49868 1.56520 2.25635 2.55608 3.04265 3.37073 3.40400 3.45707 3.48389 4.17454 4.30938 4.41429 4.51930 4.55361 4.56072 4.76847 4.89998 4.96206 4.96672 5.09722 5.21656 5.25357 5.31885 5.41774 5.50093 5.54311 5.56329 5.64541 5.66073 5.74488 5.76495 5.92587 5.93816 6.05306 6.11216 6.18562 6.27501 6.34156 6.41070 6.48615 6.60090 6.77967 6.78110 6.89748 7.02462 7.41991 7.66386 7.78110 8.10826 8.38399 9.49847 10.07257 10.42007 11.42814 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002469 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.966417 B =11335.660555 C =12277.067475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.522 3.478 7 O -0.550 6.550 8 C -0.155 4.155 9 C 0.106 3.894 10 N -0.496 5.496 11 C 0.135 3.865 12 C -0.237 4.237 13 C -0.018 4.018 14 C -0.243 4.243 15 C 0.509 3.491 16 O -0.545 6.545 17 C 0.106 3.894 18 C -0.154 4.154 19 C 0.185 3.815 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.134 -8.864 -19.235 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.309 3.691 7 O -0.428 6.428 8 C -0.195 4.195 9 C -0.015 4.015 10 N -0.207 5.207 11 C 0.007 3.993 12 C -0.260 4.260 13 C -0.040 4.040 14 C -0.265 4.265 15 C 0.311 3.689 16 O -0.427 6.427 17 C -0.017 4.017 18 C -0.195 4.195 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.179 0.821 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.413 -8.069 -19.326 26.608 hybrid contribution 0.034 -0.323 1.179 1.222 sum 16.447 -8.391 -18.147 25.889 Atomic orbital electron populations 1.21654 0.94017 1.01749 1.01917 1.21672 0.96668 1.00167 0.94624 0.91235 1.21637 0.78234 1.00865 0.99475 1.48157 1.07335 1.59997 1.18047 1.20185 0.88525 0.77655 0.82731 1.90692 1.75554 1.45215 1.31373 1.21964 0.93351 1.03637 1.00591 1.21736 0.75856 1.05819 0.98131 1.45640 1.09490 1.16011 1.49528 1.22015 0.94625 0.89067 0.93556 1.20658 0.92428 1.02456 1.10432 1.21447 1.00624 0.91668 0.90275 1.22170 0.93194 1.01680 1.09457 1.17239 0.88920 0.82881 0.79860 1.91014 1.72254 1.29570 1.49824 1.21904 0.97543 0.97438 0.84842 1.22707 1.00503 1.00521 0.95755 1.20181 0.90254 0.95670 0.86475 0.93414 1.42421 1.76419 1.11443 1.05794 1.19247 1.35872 0.94093 0.87717 0.91202 1.24742 1.02067 0.96024 0.98080 1.69673 1.49929 1.09474 1.28850 0.86151 0.77326 0.78829 0.84067 1.20602 1.21920 1.21906 0.90708 0.93793 0.93055 0.89311 0.91547 0.87803 0.88494 0.88177 0.87164 0.82101 0.83805 0.84865 0.83484 0.91273 0.90613 0.90493 0.92091 0.78184 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.03 37.16 0.34 -1.86 16 2 C -0.11 -1.83 2.44 -90.72 -0.22 -2.05 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.71 5.69 -3.93 -0.02 1.68 16 5 N -0.60 -8.10 2.98 -173.03 -0.52 -8.61 16 6 C 0.52 6.97 7.70 -10.98 -0.08 6.89 16 7 O -0.55 -8.91 15.40 5.56 0.09 -8.82 16 8 C -0.15 -1.56 4.37 -27.89 -0.12 -1.68 16 9 C 0.11 1.04 4.63 -4.04 -0.02 1.02 16 10 N -0.50 -4.53 2.58 -119.77 -0.31 -4.84 16 11 C 0.13 0.75 10.28 -16.84 -0.17 0.58 16 12 C -0.24 -1.17 10.01 -39.88 -0.40 -1.57 16 13 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 14 C -0.24 -2.25 9.99 -39.38 -0.39 -2.64 16 15 C 0.51 6.19 7.41 -15.45 -0.11 6.08 16 16 O -0.54 -9.07 16.63 4.86 0.08 -8.99 16 17 C 0.11 1.31 6.34 -3.71 -0.02 1.28 16 18 C -0.15 -2.53 5.66 -26.61 -0.15 -2.68 16 19 C 0.18 3.44 2.20 -67.89 -0.15 3.29 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -17.23 4.41 -53.38 -0.24 -17.47 16 22 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 26 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.19 7.69 -51.93 -0.40 0.79 16 36 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.10 0.78 7.97 -51.93 -0.41 0.37 16 38 H 0.11 1.40 7.33 -51.93 -0.38 1.02 16 39 H 0.16 0.37 8.04 -52.48 -0.42 -0.05 16 40 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 41 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.38 10.00 7.50 -40.82 -0.31 9.69 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -34.62 389.36 -9.09 -43.71 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.58 Total: 8.31 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.18 Total: 0.89 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.34 Total: -57.92 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.62 -9.09 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036059050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds