Wall clock time and date at job start Tue Mar 31 2020 17:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50022 * 2 1 4 4 C 1.52758 * 109.58862 * 240.04883 * 2 1 3 5 5 N 1.46927 * 109.00682 * 185.53961 * 4 2 1 6 6 C 1.34784 * 120.62995 * 233.58186 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72079 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71961 * 6 5 4 9 9 C 1.53001 * 109.47168 * 179.97438 * 8 6 5 10 10 N 1.46504 * 109.47415 * 179.97438 * 9 8 6 11 11 C 1.35766 * 119.61986 * 89.99983 * 10 9 8 12 12 C 1.35345 * 120.69825 * 180.02562 * 11 10 9 13 13 C 1.40196 * 119.95217 * 359.97438 * 12 11 10 14 14 C 1.36398 * 119.26157 * 359.97438 * 13 12 11 15 15 C 1.34650 * 119.62616 * 269.73462 * 10 9 8 16 16 O 1.22064 * 119.98687 * 359.96807 * 15 10 9 17 17 C 1.46923 * 118.73985 * 53.30967 * 5 4 2 18 18 C 1.53194 * 108.77322 * 306.63925 * 17 5 4 19 19 C 1.53039 * 109.49681 * 120.06753 * 2 1 3 20 20 H 1.09000 * 109.45771 * 61.32818 * 19 2 1 21 21 N 1.46502 * 109.44628 * 301.35789 * 19 2 1 22 22 C 1.36940 * 119.99848 * 154.93657 * 21 19 2 23 23 H 1.08003 * 119.99593 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00404 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99494 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00307 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47103 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47258 * 119.99934 * 26 24 22 29 29 H 1.48496 * 109.46984 * 239.99902 * 26 24 22 30 30 H 1.09000 * 109.47013 * 299.93505 * 1 2 3 31 31 H 1.09004 * 109.46826 * 59.93342 * 1 2 3 32 32 H 1.08994 * 109.47695 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.51509 * 65.65348 * 4 2 1 34 34 H 1.09007 * 109.43462 * 305.37306 * 4 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 36 36 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 37 37 H 1.09000 * 109.47339 * 299.99895 * 9 8 6 38 38 H 1.09002 * 109.46926 * 60.00175 * 9 8 6 39 39 H 1.08003 * 119.65196 * 0.02562 * 11 10 9 40 40 H 1.08005 * 120.02719 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.36907 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.34932 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.59009 * 66.42846 * 17 5 4 44 44 H 1.09006 * 109.58796 * 186.85605 * 17 5 4 45 45 H 1.08996 * 109.49478 * 174.58662 * 18 17 5 46 46 H 1.08997 * 109.50001 * 294.65599 * 18 17 5 47 47 H 0.96996 * 120.00273 * 334.94303 * 21 19 2 48 48 H 0.96999 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8284 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4985 -2.0795 9 6 6.4199 0.0738 -3.3467 10 7 7.8777 -0.0364 -3.2515 11 6 8.4978 -1.1525 -3.7132 12 6 9.8433 -1.2775 -3.6357 13 6 10.6108 -0.2472 -3.0745 14 6 9.9861 0.8737 -2.6122 15 6 8.5877 0.9726 -2.7121 16 8 8.0163 1.9720 -2.3064 17 6 4.1058 -1.4256 0.0315 18 6 3.5708 -0.6940 1.2666 19 6 2.0408 -0.7228 1.2485 20 1 1.6971 -1.7571 1.2354 21 7 1.5259 -0.0524 2.4451 22 6 1.3944 -0.7488 3.6169 23 1 1.6707 -1.7920 3.6589 24 6 0.9061 -0.1139 4.7506 25 7 0.5699 1.1577 4.6993 26 14 0.7274 -1.0635 6.3491 27 1 1.1709 -2.4659 6.1440 28 1 1.5638 -0.4279 7.3987 29 1 -0.6951 -1.0521 6.7753 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7652 -0.1497 -2.1346 34 1 1.6031 -1.7150 -1.2974 35 1 6.1324 0.0595 -1.2115 36 1 6.0600 -1.5471 -1.9745 37 1 6.0689 -0.4846 -4.2145 38 1 6.1414 1.1223 -3.4522 39 1 7.9113 -1.9490 -4.1468 40 1 10.3253 -2.1703 -4.0059 41 1 11.6849 -0.3401 -3.0089 42 1 10.5602 1.6782 -2.1770 43 1 3.8385 -2.4808 0.0875 44 1 5.1902 -1.3231 -0.0127 45 1 3.9333 -1.1885 2.1677 46 1 3.9159 0.3398 1.2549 47 1 1.2781 0.8846 2.4073 48 1 0.2283 1.6013 5.4914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036059050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:01 Heat of formation + Delta-G solvation = -49.635791 kcal Electronic energy + Delta-G solvation = -28721.691438 eV Core-core repulsion = 24776.229908 eV Total energy + Delta-G solvation = -3945.461530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37153 -41.29625 -39.13869 -37.96569 -36.22421 -36.03699 -34.53491 -33.13033 -32.14872 -31.03689 -30.71438 -28.00354 -26.87928 -25.81238 -24.65005 -24.28017 -23.17191 -23.01640 -21.25403 -20.10315 -19.07686 -18.84471 -18.27335 -17.78920 -17.30167 -17.06735 -16.74412 -16.71058 -16.39478 -15.73496 -15.51952 -15.40364 -15.15287 -14.99394 -14.84968 -14.60814 -14.31055 -13.92591 -13.75823 -13.53321 -13.23739 -13.17557 -12.97185 -12.89634 -12.84447 -12.77522 -12.63700 -12.47504 -12.29311 -12.08930 -12.07264 -11.85856 -11.68383 -11.19761 -11.17003 -11.00718 -10.94527 -10.80523 -9.70383 -8.98338 -8.94863 -7.92256 -5.20287 -0.04409 0.95596 1.47197 1.47836 1.47960 1.56047 1.57796 2.05157 2.57040 2.71434 3.39647 3.43243 3.64439 3.67405 3.78197 3.81819 3.91047 3.99717 4.01978 4.07615 4.20141 4.25862 4.31350 4.36615 4.38295 4.47956 4.52551 4.64826 4.68875 4.75746 4.78107 4.79566 4.82288 4.95498 4.99959 5.11212 5.17084 5.23602 5.30122 5.38732 5.44313 5.48597 5.54921 5.61433 5.70864 6.13152 6.28929 6.35061 7.00498 7.05511 7.35139 8.11367 8.34252 9.31762 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002469 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.966417 B =11335.660555 C =12277.067475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 H 0.044 0.956 4 C 0.128 3.872 5 N -0.606 5.606 6 C 0.520 3.480 7 O -0.581 6.581 8 C -0.144 4.144 9 C 0.110 3.890 10 N -0.492 5.492 11 C 0.131 3.869 12 C -0.228 4.228 13 C 0.008 3.992 14 C -0.286 4.286 15 C 0.490 3.510 16 O -0.617 6.617 17 C 0.115 3.885 18 C -0.147 4.147 19 C 0.180 3.820 20 H 0.054 0.946 21 N -0.734 5.734 22 C -0.227 4.227 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.969 3.031 27 H -0.261 1.261 28 H -0.299 1.299 29 H -0.298 1.298 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.205 0.795 40 H 0.185 0.815 41 H 0.166 0.834 42 H 0.139 0.861 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.369 0.631 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.273 -13.482 -21.164 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.063 0.937 4 C 0.005 3.995 5 N -0.337 5.337 6 C 0.309 3.691 7 O -0.461 6.461 8 C -0.184 4.184 9 C -0.012 4.012 10 N -0.201 5.201 11 C 0.005 3.995 12 C -0.250 4.250 13 C -0.014 4.014 14 C -0.308 4.308 15 C 0.295 3.705 16 O -0.505 6.505 17 C -0.007 4.007 18 C -0.188 4.188 19 C 0.071 3.929 20 H 0.072 0.928 21 N -0.372 5.372 22 C -0.359 4.359 23 H 0.099 0.901 24 C -0.272 4.272 25 N -0.625 5.625 26 Si 0.799 3.201 27 H -0.185 1.185 28 H -0.227 1.227 29 H -0.225 1.225 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.222 0.778 40 H 0.202 0.798 41 H 0.183 0.817 42 H 0.157 0.843 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.200 0.800 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.606 -12.783 -21.306 31.041 hybrid contribution -0.551 1.020 1.635 2.005 sum 18.055 -11.763 -19.671 29.177 Atomic orbital electron populations 1.21568 0.93840 1.02195 1.01097 1.21552 0.96814 0.98897 0.95036 0.93714 1.21508 0.79069 1.01531 0.97420 1.48227 1.07039 1.60055 1.18425 1.20703 0.89750 0.76559 0.82093 1.90682 1.76381 1.46331 1.32733 1.21916 0.90642 1.05857 0.99979 1.21626 0.76532 1.03888 0.99126 1.45576 1.09069 1.16529 1.48953 1.22836 0.95641 0.88396 0.92577 1.21218 0.92129 1.03012 1.08646 1.21893 1.02386 0.90073 0.86999 1.22095 0.92007 1.03693 1.12964 1.17724 0.90063 0.82791 0.79917 1.90961 1.73482 1.32368 1.53657 1.21926 0.98894 0.97857 0.82035 1.22513 0.98581 0.99755 0.97940 1.20437 0.91566 0.95505 0.85352 0.92783 1.42643 1.76831 1.10842 1.06917 1.19653 1.33401 0.94463 0.88398 0.90139 1.25539 1.03298 0.96936 1.01474 1.69843 1.52168 1.11246 1.29225 0.85121 0.76555 0.78431 0.79981 1.18522 1.22657 1.22516 0.94301 0.91807 0.91889 0.89859 0.89241 0.89400 0.84296 0.85453 0.91220 0.77785 0.79789 0.81655 0.84344 0.88526 0.87883 0.91307 0.94524 0.80000 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.03 71.98 0.65 -3.55 16 2 C -0.10 -3.39 2.44 -10.86 -0.03 -3.41 16 3 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 4 C 0.13 3.41 5.69 86.22 0.49 3.90 16 5 N -0.61 -15.00 2.98 -819.72 -2.44 -17.44 16 6 C 0.52 13.07 7.70 87.65 0.67 13.74 16 7 O -0.58 -18.40 15.40 -3.04 -0.05 -18.45 16 8 C -0.14 -2.60 4.37 29.85 0.13 -2.47 16 9 C 0.11 2.05 4.63 86.38 0.40 2.45 16 10 N -0.49 -8.24 2.58 -650.97 -1.68 -9.93 16 11 C 0.13 0.88 10.28 83.42 0.86 1.74 16 12 C -0.23 -1.08 10.01 22.08 0.22 -0.86 16 13 C 0.01 0.07 10.10 22.32 0.23 0.30 16 14 C -0.29 -5.30 9.99 22.40 0.22 -5.07 16 15 C 0.49 12.37 7.41 84.82 0.63 13.00 16 16 O -0.62 -22.59 16.63 -5.53 -0.09 -22.69 16 17 C 0.12 2.51 6.34 86.36 0.55 3.06 16 18 C -0.15 -4.74 5.66 30.67 0.17 -4.56 16 19 C 0.18 6.64 2.20 45.02 0.10 6.74 16 20 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 21 N -0.73 -35.94 4.41 -322.81 -1.42 -37.36 16 22 C -0.23 -12.16 9.93 84.03 0.83 -11.33 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 24 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 25 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 26 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 27 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 30 H 0.04 1.53 7.36 -2.39 -0.02 1.52 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.37 7.01 -2.39 -0.02 2.36 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 1.96 7.69 -2.39 -0.02 1.94 16 36 H 0.14 1.33 7.94 -2.39 -0.02 1.31 16 37 H 0.13 1.63 7.97 -2.39 -0.02 1.61 16 38 H 0.07 1.90 7.33 -2.39 -0.02 1.88 16 39 H 0.21 -0.43 8.04 -2.91 -0.02 -0.45 16 40 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.74 5.93 -2.38 -0.01 1.72 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.37 20.16 7.50 -92.71 -0.70 19.46 16 48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -83.00 389.36 3.48 -79.52 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.26 Total: 28.81 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.60 Total: 9.55 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.26 Total: -124.52 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.14 Total: -41.13 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -83.00 3.48 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036059050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.886 kcal (2) G-P(sol) polarization free energy of solvation -83.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds