Wall clock time and date at job start Tue Mar 31 2020 17:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00250 * 2 1 4 4 C 1.50695 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.38359 * 120.34732 * 269.72760 * 4 3 2 6 6 N 1.31925 * 121.07875 * 179.71958 * 5 4 3 7 7 C 1.31692 * 121.88055 * 0.54101 * 6 5 4 8 8 C 1.39519 * 120.56606 * 359.74554 * 7 6 5 9 9 C 1.47841 * 120.55851 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00030 * 309.82228 * 9 8 7 11 11 N 1.34786 * 119.99815 * 129.82713 * 9 8 7 12 12 C 1.46926 * 120.62925 * 3.50734 * 11 9 8 13 13 C 1.52756 * 109.00409 * 233.58447 * 12 11 9 14 14 C 1.53046 * 109.38763 * 305.58656 * 13 12 11 15 15 H 1.09005 * 109.44614 * 301.23079 * 14 13 12 16 16 N 1.46493 * 109.46380 * 181.26304 * 14 13 12 17 17 C 1.36938 * 120.00284 * 84.92927 * 16 14 13 18 18 H 1.08004 * 119.99417 * 0.02562 * 17 16 14 19 19 C 1.38803 * 120.00152 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00109 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 120.00211 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46877 * 89.99569 * 21 19 17 23 23 H 1.48499 * 109.46959 * 210.00202 * 21 19 17 24 24 H 1.48494 * 109.46690 * 329.99859 * 21 19 17 25 25 C 1.53038 * 109.53232 * 61.24028 * 14 13 12 26 26 H 1.09008 * 109.52793 * 58.60796 * 25 14 13 27 27 C 1.53000 * 109.49689 * 178.68678 * 25 14 13 28 28 C 1.46923 * 120.62589 * 183.78456 * 11 9 8 29 29 C 1.38349 * 120.34921 * 89.99614 * 4 3 2 30 30 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 60.00078 * 1 2 3 32 32 H 1.09001 * 109.47408 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.46749 * 300.00118 * 3 2 1 34 34 H 1.09002 * 109.47245 * 59.99554 * 3 2 1 35 35 H 1.08005 * 119.45613 * 359.96748 * 5 4 3 36 36 H 1.07997 * 119.72156 * 179.72570 * 7 6 5 37 37 H 1.09000 * 109.58968 * 353.41635 * 12 11 9 38 38 H 1.09001 * 109.58406 * 113.84731 * 12 11 9 39 39 H 1.09008 * 109.56557 * 185.55526 * 13 12 11 40 40 H 1.08999 * 109.38777 * 65.51582 * 13 12 11 41 41 H 0.97001 * 119.99658 * 264.93687 * 16 14 13 42 42 H 0.97002 * 120.00145 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47596 * 179.84073 * 27 25 14 44 44 H 1.09002 * 109.46999 * 299.84192 * 27 25 14 45 45 H 1.09000 * 109.47269 * 59.83453 * 27 25 14 46 46 H 1.08999 * 109.58559 * 246.15582 * 28 11 9 47 47 H 1.08996 * 109.59142 * 6.44338 * 28 11 9 48 48 H 1.08001 * 120.85607 * 0.02660 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2093 1.1372 1.1949 6 7 5.5239 1.0276 1.2124 7 6 6.2319 0.9709 0.1034 8 6 5.6048 1.0204 -1.1420 9 6 6.3998 0.9562 -2.3869 10 8 7.3568 1.6906 -2.5354 11 7 6.0631 0.0832 -3.3571 12 6 4.8649 -0.7567 -3.2255 13 6 5.2586 -2.2194 -3.4231 14 6 5.9904 -2.3726 -4.7585 15 1 5.3417 -2.0386 -5.5683 16 7 6.3422 -3.7798 -4.9637 17 6 5.4299 -4.6406 -5.5132 18 1 4.4511 -4.2818 -5.7957 19 6 5.7634 -5.9737 -5.7081 20 7 4.8867 -6.8010 -6.2368 21 14 7.4566 -6.5940 -5.2202 22 1 7.4243 -7.0655 -3.8124 23 1 7.8476 -7.7170 -6.1097 24 1 8.4438 -5.4924 -5.3507 25 6 7.2648 -1.5253 -4.7437 26 1 7.9034 -1.8421 -3.9190 27 6 8.0126 -1.7046 -6.0664 28 6 6.8909 -0.0507 -4.5636 29 6 4.2098 1.1310 -1.1930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.6678 1.1852 2.1282 36 1 7.3071 0.8857 0.1583 37 1 4.4345 -0.6266 -2.2326 38 1 4.1343 -0.4723 -3.9829 39 1 4.3633 -2.8413 -3.4256 40 1 5.9152 -2.5303 -2.6106 41 1 7.2214 -4.1018 -4.7102 42 1 5.1196 -7.7328 -6.3726 43 1 8.9187 -1.0988 -6.0566 44 1 8.2784 -2.7540 -6.1941 45 1 7.3733 -1.3889 -6.8909 46 1 6.3289 0.2925 -5.4322 47 1 7.7957 0.5472 -4.4542 48 1 3.6917 1.1722 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036061568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:21 Heat of formation + Delta-G solvation = -24.356517 kcal Electronic energy + Delta-G solvation = -29206.366950 eV Core-core repulsion = 25262.001611 eV Total energy + Delta-G solvation = -3944.365339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12314 -39.69503 -38.13391 -37.71309 -34.91282 -33.55800 -33.01664 -32.02340 -31.58614 -29.89232 -27.86283 -26.79612 -25.83930 -25.60616 -24.21506 -22.84685 -22.46327 -21.58958 -20.19886 -19.34872 -17.68448 -17.42642 -17.33646 -16.97868 -16.77615 -16.21240 -15.70176 -15.53219 -15.01528 -14.87573 -14.42512 -14.09952 -13.95157 -13.75045 -13.55330 -13.35907 -13.30530 -12.97313 -12.81654 -12.52635 -12.45063 -12.22765 -11.96237 -11.82780 -11.81552 -11.47904 -11.07646 -10.93186 -10.75399 -10.57739 -10.32978 -10.25525 -10.13711 -10.05238 -9.81540 -9.64944 -9.60593 -9.39167 -8.95238 -8.64087 -7.30437 -5.80651 -3.16206 0.48152 0.78029 2.48751 2.86559 3.29013 3.34922 3.38362 3.43627 3.65953 4.04890 4.24472 4.37253 4.46760 4.56003 4.56281 4.64766 4.85478 4.95118 5.00160 5.00562 5.03577 5.12070 5.20476 5.21997 5.26872 5.38102 5.40698 5.48449 5.57025 5.62472 5.66821 5.73271 5.80530 5.91782 5.98915 6.06983 6.19390 6.24390 6.25453 6.35498 6.45670 6.65113 6.70996 6.73347 6.90499 7.29918 7.56389 7.94659 7.99988 8.38428 9.16572 9.89446 10.09221 11.37617 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003395 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.342005 B = 8245.516216 C = 9688.245191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.107 3.893 4 C -0.150 4.150 5 C 0.137 3.863 6 N -0.484 5.484 7 C 0.155 3.845 8 C -0.174 4.174 9 C 0.564 3.436 10 O -0.538 6.538 11 N -0.597 5.597 12 C 0.098 3.902 13 C -0.152 4.152 14 C 0.189 3.811 15 H 0.057 0.943 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.933 5.933 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.114 4.114 26 H 0.069 0.931 27 C -0.137 4.137 28 C 0.121 3.879 29 C -0.024 4.024 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 19.307 11.914 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.020 4.020 6 N -0.192 5.192 7 C -0.002 4.002 8 C -0.180 4.180 9 C 0.351 3.649 10 O -0.416 6.416 11 N -0.328 5.328 12 C -0.025 4.025 13 C -0.193 4.193 14 C 0.079 3.921 15 H 0.075 0.925 16 N -0.386 5.386 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.581 5.581 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.134 4.134 26 H 0.088 0.912 27 C -0.195 4.195 28 C -0.001 4.001 29 C -0.050 4.050 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.194 0.806 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.577 19.358 12.492 23.489 hybrid contribution 0.373 -0.537 -0.461 0.800 sum -4.204 18.820 12.031 22.730 Atomic orbital electron populations 1.22797 0.80428 1.03337 1.00039 1.88009 1.20040 1.26712 1.95420 1.21216 0.88498 0.85711 1.01541 1.20513 0.95875 1.04598 0.94185 1.22882 0.89985 0.91631 0.97535 1.67817 1.07851 1.12812 1.30676 1.22917 1.00606 0.90782 0.85907 1.20953 0.94533 1.06669 0.95795 1.18069 0.83880 0.80402 0.82555 1.90787 1.28921 1.42004 1.79883 1.48119 1.27024 1.38313 1.19373 1.22082 0.86273 0.91815 1.02337 1.22571 1.02535 0.93249 1.00903 1.20169 0.92766 0.84882 0.94262 0.92486 1.42762 1.15075 1.04968 1.75835 1.19043 0.95752 0.89556 1.32918 0.89208 1.24645 0.97306 0.96085 1.00875 1.69696 1.34239 1.04409 1.49763 0.86596 0.85552 0.78431 0.78200 1.21150 1.21770 1.20295 1.21798 0.98560 0.94076 0.98983 0.91246 1.21671 0.98997 1.02738 0.96104 1.21742 0.95632 0.97037 0.85693 1.21694 0.92430 0.91954 0.98904 0.89153 0.93794 0.93954 0.91936 0.91788 0.82231 0.81799 0.89796 0.90982 0.89900 0.92280 0.80608 0.93053 0.93512 0.91330 0.92524 0.91090 0.89093 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.58 10.69 -35.23 -0.38 -3.96 16 3 C 0.11 0.77 6.08 36.00 0.22 0.99 16 4 C -0.15 -1.37 5.52 -104.54 -0.58 -1.95 16 5 C 0.14 1.32 10.85 -17.47 -0.19 1.13 16 6 N -0.48 -5.68 10.35 -12.91 -0.13 -5.81 16 7 C 0.16 1.86 10.91 -17.13 -0.19 1.68 16 8 C -0.17 -2.10 5.02 -104.82 -0.53 -2.63 16 9 C 0.56 7.89 7.27 -12.33 -0.09 7.80 16 10 O -0.54 -9.01 16.48 5.32 0.09 -8.92 16 11 N -0.60 -7.93 2.98 -174.15 -0.52 -8.45 16 12 C 0.10 1.24 5.37 -3.94 -0.02 1.21 16 13 C -0.15 -2.43 5.64 -26.83 -0.15 -2.59 16 14 C 0.19 3.36 2.20 -67.89 -0.15 3.21 16 15 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.74 -16.63 4.21 -53.39 -0.23 -16.85 16 17 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 19 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 20 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 21 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 C -0.11 -1.73 2.46 -90.50 -0.22 -1.95 16 26 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 27 C -0.14 -2.03 9.02 37.16 0.34 -1.70 16 28 C 0.12 1.62 5.71 -3.71 -0.02 1.60 16 29 C -0.02 -0.24 7.18 -38.87 -0.28 -0.52 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.08 0.99 4.54 -51.93 -0.24 0.75 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.36 8.11 5.36 -40.82 -0.22 7.89 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.18 7.36 -51.93 -0.38 0.79 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.25 7.02 -51.93 -0.36 0.89 16 48 H 0.14 1.24 7.11 -52.49 -0.37 0.86 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -33.28 386.85 -7.77 -41.05 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.50 Total: 7.00 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.00 Total: 1.00 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.10 Total: -59.04 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.29 Total: -12.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.28 -7.77 -41.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036061568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.697 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds