Wall clock time and date at job start Tue Mar 31 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00250 * 2 1 4 4 C 1.50695 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.38359 * 120.34732 * 269.72760 * 4 3 2 6 6 N 1.31925 * 121.07875 * 179.71958 * 5 4 3 7 7 C 1.31692 * 121.88055 * 0.54101 * 6 5 4 8 8 C 1.39519 * 120.56606 * 359.74554 * 7 6 5 9 9 C 1.47841 * 120.55851 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00030 * 309.82228 * 9 8 7 11 11 N 1.34786 * 119.99815 * 129.82713 * 9 8 7 12 12 C 1.46926 * 120.62925 * 3.50734 * 11 9 8 13 13 C 1.52756 * 109.00409 * 233.58447 * 12 11 9 14 14 C 1.53046 * 109.38763 * 305.58656 * 13 12 11 15 15 H 1.09005 * 109.44614 * 301.23079 * 14 13 12 16 16 N 1.46493 * 109.46380 * 181.26304 * 14 13 12 17 17 C 1.36938 * 120.00284 * 84.92927 * 16 14 13 18 18 H 1.08004 * 119.99417 * 0.02562 * 17 16 14 19 19 C 1.38803 * 120.00152 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00109 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 120.00211 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46877 * 89.99569 * 21 19 17 23 23 H 1.48499 * 109.46959 * 210.00202 * 21 19 17 24 24 H 1.48494 * 109.46690 * 329.99859 * 21 19 17 25 25 C 1.53038 * 109.53232 * 61.24028 * 14 13 12 26 26 H 1.09008 * 109.52793 * 58.60796 * 25 14 13 27 27 C 1.53000 * 109.49689 * 178.68678 * 25 14 13 28 28 C 1.46923 * 120.62589 * 183.78456 * 11 9 8 29 29 C 1.38349 * 120.34921 * 89.99614 * 4 3 2 30 30 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 60.00078 * 1 2 3 32 32 H 1.09001 * 109.47408 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.46749 * 300.00118 * 3 2 1 34 34 H 1.09002 * 109.47245 * 59.99554 * 3 2 1 35 35 H 1.08005 * 119.45613 * 359.96748 * 5 4 3 36 36 H 1.07997 * 119.72156 * 179.72570 * 7 6 5 37 37 H 1.09000 * 109.58968 * 353.41635 * 12 11 9 38 38 H 1.09001 * 109.58406 * 113.84731 * 12 11 9 39 39 H 1.09008 * 109.56557 * 185.55526 * 13 12 11 40 40 H 1.08999 * 109.38777 * 65.51582 * 13 12 11 41 41 H 0.97001 * 119.99658 * 264.93687 * 16 14 13 42 42 H 0.97002 * 120.00145 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47596 * 179.84073 * 27 25 14 44 44 H 1.09002 * 109.46999 * 299.84192 * 27 25 14 45 45 H 1.09000 * 109.47269 * 59.83453 * 27 25 14 46 46 H 1.08999 * 109.58559 * 246.15582 * 28 11 9 47 47 H 1.08996 * 109.59142 * 6.44338 * 28 11 9 48 48 H 1.08001 * 120.85607 * 0.02660 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2093 1.1372 1.1949 6 7 5.5239 1.0276 1.2124 7 6 6.2319 0.9709 0.1034 8 6 5.6048 1.0204 -1.1420 9 6 6.3998 0.9562 -2.3869 10 8 7.3568 1.6906 -2.5354 11 7 6.0631 0.0832 -3.3571 12 6 4.8649 -0.7567 -3.2255 13 6 5.2586 -2.2194 -3.4231 14 6 5.9904 -2.3726 -4.7585 15 1 5.3417 -2.0386 -5.5683 16 7 6.3422 -3.7798 -4.9637 17 6 5.4299 -4.6406 -5.5132 18 1 4.4511 -4.2818 -5.7957 19 6 5.7634 -5.9737 -5.7081 20 7 4.8867 -6.8010 -6.2368 21 14 7.4566 -6.5940 -5.2202 22 1 7.4243 -7.0655 -3.8124 23 1 7.8476 -7.7170 -6.1097 24 1 8.4438 -5.4924 -5.3507 25 6 7.2648 -1.5253 -4.7437 26 1 7.9034 -1.8421 -3.9190 27 6 8.0126 -1.7046 -6.0664 28 6 6.8909 -0.0507 -4.5636 29 6 4.2098 1.1310 -1.1930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.6678 1.1852 2.1282 36 1 7.3071 0.8857 0.1583 37 1 4.4345 -0.6266 -2.2326 38 1 4.1343 -0.4723 -3.9829 39 1 4.3633 -2.8413 -3.4256 40 1 5.9152 -2.5303 -2.6106 41 1 7.2214 -4.1018 -4.7102 42 1 5.1196 -7.7328 -6.3726 43 1 8.9187 -1.0988 -6.0566 44 1 8.2784 -2.7540 -6.1941 45 1 7.3733 -1.3889 -6.8909 46 1 6.3289 0.2925 -5.4322 47 1 7.7957 0.5472 -4.4542 48 1 3.6917 1.1722 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036061568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:20 Heat of formation + Delta-G solvation = -46.719422 kcal Electronic energy + Delta-G solvation = -29207.336678 eV Core-core repulsion = 25262.001611 eV Total energy + Delta-G solvation = -3945.335067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05720 -40.69955 -39.11935 -38.61110 -36.38418 -34.81179 -34.00070 -33.37974 -32.83199 -31.54796 -28.44439 -27.87545 -27.02021 -26.41270 -25.39229 -24.02091 -23.55936 -22.99679 -21.49134 -20.53275 -19.46902 -18.48131 -18.13073 -17.85440 -17.35652 -17.23117 -16.78814 -16.33487 -16.25032 -16.04292 -15.89509 -15.34293 -15.17493 -14.90282 -14.78441 -14.49655 -14.36283 -14.09283 -13.95170 -13.72522 -13.46083 -13.30257 -13.03025 -12.96150 -12.91479 -12.84776 -12.47340 -12.32322 -12.13031 -12.06067 -11.89042 -11.77418 -11.34453 -11.21072 -11.02662 -10.81738 -10.67994 -10.47117 -10.22040 -9.78321 -9.27612 -8.00218 -5.32096 -0.34199 -0.00233 1.37766 1.39235 1.43806 1.46481 1.83894 2.49008 2.51734 3.00502 3.21606 3.31893 3.43392 3.52376 3.66819 3.71528 3.76943 3.85971 3.91926 3.99365 4.04757 4.21332 4.30946 4.33602 4.44483 4.53271 4.56384 4.58428 4.60142 4.65522 4.70859 4.74590 4.79360 4.86097 4.90430 4.95954 4.98786 5.03166 5.13094 5.22765 5.35946 5.40925 5.45866 5.56622 5.80127 6.21287 6.22181 6.24054 6.75682 6.91916 7.10054 7.86853 8.04899 9.21314 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003395 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.342005 B = 8245.516216 C = 9688.245191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.106 3.894 4 C -0.146 4.146 5 C 0.135 3.865 6 N -0.503 5.503 7 C 0.143 3.857 8 C -0.189 4.189 9 C 0.568 3.432 10 O -0.569 6.569 11 N -0.595 5.595 12 C 0.109 3.891 13 C -0.144 4.144 14 C 0.183 3.817 15 H 0.053 0.947 16 N -0.747 5.747 17 C -0.219 4.219 18 H 0.063 0.937 19 C -0.060 4.060 20 N -0.984 5.984 21 Si 0.945 3.055 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.253 1.253 25 C -0.104 4.104 26 H 0.062 0.938 27 C -0.134 4.134 28 C 0.126 3.874 29 C -0.024 4.024 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.163 0.837 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.362 0.638 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 21.362 12.974 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.030 3.970 4 C -0.148 4.148 5 C -0.022 4.022 6 N -0.211 5.211 7 C -0.014 4.014 8 C -0.194 4.194 9 C 0.356 3.644 10 O -0.449 6.449 11 N -0.326 5.326 12 C -0.014 4.014 13 C -0.184 4.184 14 C 0.075 3.925 15 H 0.071 0.929 16 N -0.389 5.389 17 C -0.350 4.350 18 H 0.081 0.919 19 C -0.252 4.252 20 N -0.635 5.635 21 Si 0.773 3.227 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.178 1.178 25 C -0.124 4.124 26 H 0.080 0.920 27 C -0.192 4.192 28 C 0.004 3.996 29 C -0.050 4.050 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.204 0.796 36 H 0.180 0.820 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.195 0.805 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.831 21.472 13.572 25.857 hybrid contribution 0.337 -1.086 -0.745 1.359 sum -4.494 20.386 12.827 24.501 Atomic orbital electron populations 1.22926 0.79094 1.03641 1.01348 1.87952 1.21608 1.27970 1.95713 1.21358 0.86814 0.85337 1.03538 1.20774 0.97203 1.03230 0.93557 1.23404 0.89443 0.90295 0.99022 1.67841 1.09017 1.13631 1.30567 1.22957 1.00844 0.91352 0.86225 1.20821 0.95301 1.08487 0.94758 1.18305 0.83443 0.79792 0.82867 1.90766 1.30365 1.43288 1.80483 1.48132 1.27064 1.38115 1.19297 1.22023 0.86298 0.89177 1.03854 1.22380 1.01197 0.95573 0.99293 1.20408 0.94362 0.82828 0.94881 0.92900 1.42785 1.14295 1.06342 1.75526 1.19013 0.95206 0.89997 1.30752 0.91941 1.25354 1.01095 0.96561 1.02155 1.69862 1.36551 1.04601 1.52464 0.85563 0.81692 0.78094 0.77345 1.21135 1.22564 1.17753 1.21675 0.96900 0.94757 0.99081 0.91960 1.21635 1.00129 1.01576 0.95878 1.21701 0.96132 0.95385 0.86420 1.21911 0.91628 0.91291 1.00137 0.89468 0.92818 0.92299 0.90389 0.89404 0.79561 0.81996 0.88522 0.88931 0.91726 0.93247 0.80497 0.93541 0.91139 0.93775 0.92083 0.89332 0.89029 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.68 10.69 -148.98 -1.59 -8.27 16 3 C 0.11 1.18 6.08 71.23 0.43 1.61 16 4 C -0.15 -2.29 5.52 -19.81 -0.11 -2.40 16 5 C 0.14 2.30 10.85 84.71 0.92 3.22 16 6 N -0.50 -11.16 10.35 -194.75 -2.01 -13.18 16 7 C 0.14 3.34 10.91 85.02 0.93 4.27 16 8 C -0.19 -4.29 5.02 -19.99 -0.10 -4.39 16 9 C 0.57 15.11 7.27 86.78 0.63 15.74 16 10 O -0.57 -18.55 16.48 -3.88 -0.06 -18.61 16 11 N -0.60 -14.68 2.98 -823.15 -2.45 -17.13 16 12 C 0.11 2.53 5.37 86.22 0.46 2.99 16 13 C -0.14 -4.49 5.64 30.53 0.17 -4.31 16 14 C 0.18 6.34 2.20 45.02 0.10 6.44 16 15 H 0.05 1.89 8.08 -2.38 -0.02 1.88 16 16 N -0.75 -33.05 4.21 -322.82 -1.36 -34.41 16 17 C -0.22 -11.90 10.41 84.03 0.87 -11.03 16 18 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 19 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 20 N -0.98 -62.11 13.97 21.65 0.30 -61.81 16 21 Si 0.94 45.28 27.74 68.60 1.90 47.18 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 25 C -0.10 -2.99 2.46 -10.72 -0.03 -3.01 16 26 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 27 C -0.13 -3.73 9.02 71.98 0.65 -3.08 16 28 C 0.13 3.10 5.71 86.36 0.49 3.59 16 29 C -0.02 -0.42 7.18 22.73 0.16 -0.26 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 35 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.10 2.07 4.54 -2.39 -0.01 2.05 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.36 15.88 5.36 -92.71 -0.50 15.38 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.04 1.44 7.36 -2.39 -0.02 1.42 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 2.33 7.02 -2.39 -0.02 2.31 16 48 H 0.16 2.26 7.11 -2.91 -0.02 2.24 16 Total: -1.00 -73.09 386.85 2.43 -70.66 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.41 Total: 27.71 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.30 Total: 7.87 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.52 Total: -126.54 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.66 Total: -26.88 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -73.09 2.43 -70.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036061568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.939 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds