Wall clock time and date at job start Tue Mar 31 2020 17:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.52428 * 2 1 4 4 C 1.52761 * 109.56421 * 240.04747 * 2 1 3 5 5 N 1.46929 * 109.01020 * 185.55333 * 4 2 1 6 6 C 1.34780 * 120.62776 * 233.58628 * 5 4 2 7 7 O 1.21690 * 120.00135 * 6.50612 * 6 5 4 8 8 C 1.46674 * 119.99527 * 186.51341 * 6 5 4 9 9 C 1.38160 * 126.18895 * 203.76037 * 8 6 5 10 10 C 1.38868 * 106.97538 * 180.02562 * 9 8 6 11 11 C 1.36348 * 108.02032 * 359.97438 * 10 9 8 12 12 N 1.34741 * 108.81631 * 359.96503 * 11 10 9 13 13 H 0.97004 * 125.71624 * 180.02562 * 12 11 10 14 14 C 1.51087 * 122.60117 * 179.91048 * 11 10 9 15 15 C 1.53539 * 107.72168 * 344.13410 * 14 11 10 16 16 O 1.42988 * 109.68721 * 48.02657 * 15 14 11 17 17 C 1.43416 * 114.34171 * 288.97388 * 16 15 14 18 18 C 1.46920 * 118.73751 * 53.30700 * 5 4 2 19 19 C 1.53191 * 108.77731 * 306.64689 * 18 5 4 20 20 C 1.53035 * 109.49779 * 120.08075 * 2 1 3 21 21 H 1.09005 * 109.45015 * 61.30681 * 20 2 1 22 22 N 1.46495 * 109.46221 * 301.33368 * 20 2 1 23 23 C 1.36943 * 119.99847 * 154.92651 * 22 20 2 24 24 H 1.07994 * 120.00093 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00467 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99491 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47189 * 90.00666 * 27 25 23 29 29 H 1.48504 * 109.46870 * 209.99949 * 27 25 23 30 30 H 1.48496 * 109.47433 * 329.99849 * 27 25 23 31 31 H 1.09003 * 109.47162 * 299.92203 * 1 2 3 32 32 H 1.09000 * 109.47102 * 59.91351 * 1 2 3 33 33 H 1.08997 * 109.47558 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.50798 * 65.66786 * 4 2 1 35 35 H 1.08994 * 109.43054 * 305.38911 * 4 2 1 36 36 H 1.08004 * 126.52146 * 0.02562 * 9 8 6 37 37 H 1.09009 * 109.80753 * 224.57668 * 14 11 10 38 38 H 1.09007 * 109.85876 * 103.72095 * 14 11 10 39 39 H 1.08996 * 109.43613 * 287.95959 * 15 14 11 40 40 H 1.08994 * 109.43407 * 168.09017 * 15 14 11 41 41 H 1.09004 * 109.76600 * 170.34816 * 17 16 15 42 42 H 1.09000 * 109.76932 * 291.07604 * 17 16 15 43 43 H 1.09004 * 109.58820 * 66.43087 * 18 5 4 44 44 H 1.08996 * 109.58428 * 186.71527 * 18 5 4 45 45 H 1.09000 * 109.49961 * 174.58953 * 19 18 5 46 46 H 1.09002 * 109.49645 * 294.64974 * 19 18 5 47 47 H 0.97000 * 120.00394 * 334.93303 * 22 20 2 48 48 H 0.96995 * 120.00040 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2472 5 7 3.5046 -0.8291 -1.1696 6 6 4.2811 -0.3855 -2.1780 7 8 3.7825 0.2179 -3.1098 8 6 5.7270 -0.6303 -2.1523 9 6 6.6911 0.1076 -2.8117 10 6 7.9183 -0.4697 -2.5131 11 6 7.6948 -1.5333 -1.6897 12 7 6.3705 -1.6379 -1.4646 13 1 5.9414 -2.3099 -0.9120 14 6 8.8119 -2.4030 -1.1619 15 6 10.0607 -2.1263 -2.0113 16 8 10.2561 -0.7153 -2.1352 17 6 9.2947 -0.0566 -2.9710 18 6 4.1052 -1.4267 0.0307 19 6 3.5708 -0.6951 1.2659 20 6 2.0407 -0.7231 1.2483 21 1 1.6967 -1.7573 1.2350 22 7 1.5266 -0.0529 2.4452 23 6 1.3951 -0.7497 3.6168 24 1 1.6708 -1.7930 3.6585 25 6 0.9074 -0.1148 4.7508 26 7 0.5708 1.1566 4.7000 27 14 0.7287 -1.0650 6.3492 28 1 1.9857 -0.9570 7.1324 29 1 -0.3958 -0.5002 7.1377 30 1 0.4541 -2.4930 6.0481 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7645 -0.1496 -2.1346 35 1 1.6020 -1.7148 -1.2975 36 1 6.5226 0.9697 -3.4402 37 1 8.5333 -3.4535 -1.2459 38 1 9.0122 -2.1562 -0.1192 39 1 9.9299 -2.5627 -3.0015 40 1 10.9318 -2.5723 -1.5314 41 1 9.4049 1.0240 -2.8787 42 1 9.4428 -0.3548 -4.0089 43 1 3.8375 -2.4818 0.0867 44 1 5.1897 -1.3268 -0.0151 45 1 3.9334 -1.1897 2.1670 46 1 3.9164 0.3387 1.2543 47 1 1.2792 0.8842 2.4079 48 1 0.2297 1.6001 5.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036069630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:05 Heat of formation + Delta-G solvation = -12.747775 kcal Electronic energy + Delta-G solvation = -29242.401601 eV Core-core repulsion = 25298.539655 eV Total energy + Delta-G solvation = -3943.861946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03414 -39.88424 -38.26005 -37.59828 -34.76987 -33.07168 -32.75009 -31.74307 -31.50694 -29.57952 -29.11549 -27.01547 -25.45846 -24.92327 -23.86097 -22.96300 -21.78680 -21.50491 -20.29114 -19.53930 -19.25347 -17.67131 -17.12750 -16.74184 -16.25004 -15.96850 -15.79808 -15.15177 -15.03987 -14.66875 -14.37442 -14.15983 -13.87610 -13.78465 -13.73463 -13.39841 -13.28222 -13.06286 -12.78855 -12.53061 -12.48581 -12.21488 -11.76314 -11.71794 -11.64978 -11.26472 -11.19007 -11.00703 -10.86836 -10.72948 -10.46798 -10.25203 -10.11873 -10.02809 -9.80834 -9.68680 -9.06686 -8.94576 -8.64191 -8.14093 -7.03023 -5.83086 -3.12345 1.33575 2.34880 2.71512 2.91308 3.32008 3.37726 3.42898 3.45029 3.55676 4.29702 4.40473 4.51815 4.54008 4.78706 4.81161 4.82596 4.94925 5.13837 5.17029 5.17896 5.20584 5.21507 5.28595 5.38098 5.44105 5.47794 5.55824 5.61587 5.67019 5.77285 5.87173 5.92353 6.01951 6.05459 6.21091 6.29033 6.36466 6.42686 6.52717 6.55361 6.67200 6.71661 6.85135 6.86986 6.96998 7.11186 7.38586 7.62053 8.11426 8.34843 9.46344 10.03308 10.38212 11.39265 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.002847 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.929986 B = 9831.191155 C =11184.743346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.606 5.606 6 C 0.589 3.411 7 O -0.535 6.535 8 C -0.047 4.047 9 C -0.092 4.092 10 C -0.220 4.220 11 C 0.048 3.952 12 N -0.524 5.524 13 H 0.421 0.579 14 C -0.088 4.088 15 C 0.070 3.930 16 O -0.380 6.380 17 C 0.137 3.863 18 C 0.090 3.910 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.758 -8.170 -15.509 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.338 5.338 6 C 0.378 3.622 7 O -0.412 6.412 8 C -0.159 4.159 9 C -0.118 4.118 10 C -0.227 4.227 11 C -0.072 4.072 12 N -0.124 5.124 13 H 0.264 0.736 14 C -0.126 4.126 15 C -0.008 4.008 16 O -0.298 6.298 17 C 0.060 3.940 18 C -0.034 4.034 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.447 -7.984 -15.662 23.402 hybrid contribution -0.682 -0.658 1.347 1.647 sum 14.765 -8.642 -14.315 22.307 Atomic orbital electron populations 1.21653 0.93932 1.01769 1.01985 1.21670 0.96720 1.00227 0.94483 0.91111 1.21662 0.77743 1.00923 0.99725 1.48070 1.07462 1.60638 1.17635 1.17075 0.83959 0.78883 0.82256 1.90814 1.73598 1.41414 1.35336 1.20430 0.92529 0.97012 1.05921 1.20757 0.89850 1.00386 1.00778 1.19905 0.96281 1.00079 1.06396 1.20314 0.84186 1.00161 1.02491 1.42393 1.06066 1.25570 1.38352 0.73618 1.21029 0.92029 0.98267 1.01274 1.22526 0.96684 0.82555 0.99029 1.88024 1.51721 1.20060 1.70001 1.21043 0.82540 0.97589 0.92813 1.22249 0.97779 0.97579 0.85798 1.22680 1.00684 1.00528 0.95206 1.20171 0.90067 0.95710 0.86591 0.93435 1.42401 1.76413 1.11429 1.05728 1.19194 1.36201 0.94061 0.87736 0.91287 1.24739 1.01937 0.96020 0.98067 1.69654 1.49744 1.09500 1.28949 0.86225 0.77313 0.78877 0.83954 1.21760 1.21763 1.20801 0.90682 0.93700 0.93058 0.89074 0.91471 0.83321 0.89602 0.89084 0.92562 0.88031 0.87929 0.92054 0.91377 0.90387 0.90500 0.91949 0.78142 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.84 16 2 C -0.11 -1.81 2.44 -90.73 -0.22 -2.03 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.12 1.75 5.70 -3.93 -0.02 1.73 16 5 N -0.61 -8.56 2.98 -174.58 -0.52 -9.08 16 6 C 0.59 9.05 7.62 -12.85 -0.10 8.96 16 7 O -0.53 -9.74 16.39 5.20 0.09 -9.65 16 8 C -0.05 -0.62 6.39 -81.75 -0.52 -1.14 16 9 C -0.09 -1.16 10.71 -39.38 -0.42 -1.58 16 10 C -0.22 -2.43 6.02 -105.01 -0.63 -3.06 16 11 C 0.05 0.48 7.14 -81.81 -0.58 -0.10 16 12 N -0.52 -5.50 4.73 -5.42 -0.03 -5.52 16 13 H 0.42 3.57 6.40 -40.82 -0.26 3.31 16 14 C -0.09 -0.61 6.56 -27.41 -0.18 -0.79 16 15 C 0.07 0.47 6.78 37.44 0.25 0.72 16 16 O -0.38 -3.65 10.74 -35.23 -0.38 -4.03 16 17 C 0.14 1.23 7.25 36.07 0.26 1.49 16 18 C 0.09 1.13 5.33 -3.71 -0.02 1.11 16 19 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 20 C 0.19 3.42 2.19 -67.89 -0.15 3.27 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -17.00 4.41 -53.39 -0.24 -17.24 16 23 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 27 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.88 4.19 -51.93 -0.22 0.66 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.38 9.89 7.51 -40.82 -0.31 9.58 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -32.42 377.95 -9.49 -41.91 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.41 Total: 10.65 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.40 Total: -2.78 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.06 Total: -58.53 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.29 Total: -13.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -9.49 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036069630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.163 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds