Wall clock time and date at job start Tue Mar 31 2020 17:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.52428 * 2 1 4 4 C 1.52761 * 109.56421 * 240.04747 * 2 1 3 5 5 N 1.46929 * 109.01020 * 185.55333 * 4 2 1 6 6 C 1.34780 * 120.62776 * 233.58628 * 5 4 2 7 7 O 1.21690 * 120.00135 * 6.50612 * 6 5 4 8 8 C 1.46674 * 119.99527 * 186.51341 * 6 5 4 9 9 C 1.38160 * 126.18895 * 203.76037 * 8 6 5 10 10 C 1.38868 * 106.97538 * 180.02562 * 9 8 6 11 11 C 1.36348 * 108.02032 * 359.97438 * 10 9 8 12 12 N 1.34741 * 108.81631 * 359.96503 * 11 10 9 13 13 H 0.97004 * 125.71624 * 180.02562 * 12 11 10 14 14 C 1.51087 * 122.60117 * 179.91048 * 11 10 9 15 15 C 1.53539 * 107.72168 * 344.13410 * 14 11 10 16 16 O 1.42988 * 109.68721 * 48.02657 * 15 14 11 17 17 C 1.43416 * 114.34171 * 288.97388 * 16 15 14 18 18 C 1.46920 * 118.73751 * 53.30700 * 5 4 2 19 19 C 1.53191 * 108.77731 * 306.64689 * 18 5 4 20 20 C 1.53035 * 109.49779 * 120.08075 * 2 1 3 21 21 H 1.09005 * 109.45015 * 61.30681 * 20 2 1 22 22 N 1.46495 * 109.46221 * 301.33368 * 20 2 1 23 23 C 1.36943 * 119.99847 * 154.92651 * 22 20 2 24 24 H 1.07994 * 120.00093 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99630 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00467 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99491 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47189 * 90.00666 * 27 25 23 29 29 H 1.48504 * 109.46870 * 209.99949 * 27 25 23 30 30 H 1.48496 * 109.47433 * 329.99849 * 27 25 23 31 31 H 1.09003 * 109.47162 * 299.92203 * 1 2 3 32 32 H 1.09000 * 109.47102 * 59.91351 * 1 2 3 33 33 H 1.08997 * 109.47558 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.50798 * 65.66786 * 4 2 1 35 35 H 1.08994 * 109.43054 * 305.38911 * 4 2 1 36 36 H 1.08004 * 126.52146 * 0.02562 * 9 8 6 37 37 H 1.09009 * 109.80753 * 224.57668 * 14 11 10 38 38 H 1.09007 * 109.85876 * 103.72095 * 14 11 10 39 39 H 1.08996 * 109.43613 * 287.95959 * 15 14 11 40 40 H 1.08994 * 109.43407 * 168.09017 * 15 14 11 41 41 H 1.09004 * 109.76600 * 170.34816 * 17 16 15 42 42 H 1.09000 * 109.76932 * 291.07604 * 17 16 15 43 43 H 1.09004 * 109.58820 * 66.43087 * 18 5 4 44 44 H 1.08996 * 109.58428 * 186.71527 * 18 5 4 45 45 H 1.09000 * 109.49961 * 174.58953 * 19 18 5 46 46 H 1.09002 * 109.49645 * 294.64974 * 19 18 5 47 47 H 0.97000 * 120.00394 * 334.93303 * 22 20 2 48 48 H 0.96995 * 120.00040 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2472 5 7 3.5046 -0.8291 -1.1696 6 6 4.2811 -0.3855 -2.1780 7 8 3.7825 0.2179 -3.1098 8 6 5.7270 -0.6303 -2.1523 9 6 6.6911 0.1076 -2.8117 10 6 7.9183 -0.4697 -2.5131 11 6 7.6948 -1.5333 -1.6897 12 7 6.3705 -1.6379 -1.4646 13 1 5.9414 -2.3099 -0.9120 14 6 8.8119 -2.4030 -1.1619 15 6 10.0607 -2.1263 -2.0113 16 8 10.2561 -0.7153 -2.1352 17 6 9.2947 -0.0566 -2.9710 18 6 4.1052 -1.4267 0.0307 19 6 3.5708 -0.6951 1.2659 20 6 2.0407 -0.7231 1.2483 21 1 1.6967 -1.7573 1.2350 22 7 1.5266 -0.0529 2.4452 23 6 1.3951 -0.7497 3.6168 24 1 1.6708 -1.7930 3.6585 25 6 0.9074 -0.1148 4.7508 26 7 0.5708 1.1566 4.7000 27 14 0.7287 -1.0650 6.3492 28 1 1.9857 -0.9570 7.1324 29 1 -0.3958 -0.5002 7.1377 30 1 0.4541 -2.4930 6.0481 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7645 -0.1496 -2.1346 35 1 1.6020 -1.7148 -1.2975 36 1 6.5226 0.9697 -3.4402 37 1 8.5333 -3.4535 -1.2459 38 1 9.0122 -2.1562 -0.1192 39 1 9.9299 -2.5627 -3.0015 40 1 10.9318 -2.5723 -1.5314 41 1 9.4049 1.0240 -2.8787 42 1 9.4428 -0.3548 -4.0089 43 1 3.8375 -2.4818 0.0867 44 1 5.1897 -1.3268 -0.0151 45 1 3.9334 -1.1897 2.1670 46 1 3.9164 0.3387 1.2543 47 1 1.2792 0.8842 2.4079 48 1 0.2297 1.6001 5.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036069630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:04 Heat of formation + Delta-G solvation = -33.795591 kcal Electronic energy + Delta-G solvation = -29243.314302 eV Core-core repulsion = 25298.539655 eV Total energy + Delta-G solvation = -3944.774648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91304 -41.02352 -39.15277 -38.76386 -36.29739 -34.61529 -33.43226 -33.18639 -32.47792 -31.16028 -30.06025 -28.12124 -26.92357 -25.93413 -24.98132 -24.09469 -23.17778 -22.52663 -21.39278 -20.80948 -20.07218 -19.12790 -18.62468 -17.56469 -17.26050 -16.83483 -16.75303 -16.68261 -16.06345 -15.76224 -15.66192 -15.39270 -15.12547 -15.04040 -14.76914 -14.59766 -14.38686 -14.10601 -13.96276 -13.68938 -13.50122 -13.26719 -13.07990 -12.88946 -12.86002 -12.77805 -12.51377 -12.36972 -12.18142 -12.12407 -11.88753 -11.75268 -11.70085 -11.25684 -11.20326 -10.89217 -10.74319 -9.95767 -9.79360 -9.03371 -8.97259 -7.92660 -5.20932 0.36000 1.47716 1.48460 1.48609 1.56836 1.73443 1.91326 2.27709 2.56635 2.97896 3.38892 3.40621 3.66713 3.72397 3.75132 3.86598 3.97464 3.98287 4.04259 4.17814 4.20560 4.26846 4.35841 4.42042 4.53597 4.55717 4.65183 4.67377 4.72701 4.75500 4.77904 4.82116 4.87133 4.90234 4.97587 5.01677 5.10722 5.16131 5.25439 5.34276 5.44128 5.53051 5.56236 5.67269 5.77806 6.22415 6.23935 6.28344 6.37582 6.95344 7.34774 8.10176 8.33471 9.30976 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.002847 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.929986 B = 9831.191155 C =11184.743346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 H 0.048 0.952 4 C 0.128 3.872 5 N -0.605 5.605 6 C 0.588 3.412 7 O -0.572 6.572 8 C -0.074 4.074 9 C -0.102 4.102 10 C -0.236 4.236 11 C 0.059 3.941 12 N -0.514 5.514 13 H 0.431 0.569 14 C -0.086 4.086 15 C 0.062 3.938 16 O -0.398 6.398 17 C 0.137 3.863 18 C 0.099 3.901 19 C -0.141 4.141 20 C 0.181 3.819 21 H 0.055 0.945 22 N -0.732 5.732 23 C -0.231 4.231 24 H 0.080 0.920 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.969 3.031 28 H -0.290 1.290 29 H -0.301 1.301 30 H -0.266 1.266 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.370 0.630 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 -11.212 -15.957 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 H 0.066 0.934 4 C 0.005 3.995 5 N -0.336 5.336 6 C 0.379 3.621 7 O -0.452 6.452 8 C -0.186 4.186 9 C -0.128 4.128 10 C -0.242 4.242 11 C -0.062 4.062 12 N -0.115 5.115 13 H 0.276 0.724 14 C -0.124 4.124 15 C -0.015 4.015 16 O -0.317 6.317 17 C 0.061 3.939 18 C -0.024 4.024 19 C -0.182 4.182 20 C 0.073 3.927 21 H 0.073 0.927 22 N -0.370 5.370 23 C -0.363 4.363 24 H 0.098 0.902 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.798 3.202 28 H -0.217 1.217 29 H -0.228 1.228 30 H -0.191 1.191 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.201 0.799 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.319 -11.092 -16.126 26.134 hybrid contribution -1.168 0.270 1.409 1.850 sum 16.151 -10.822 -14.716 24.383 Atomic orbital electron populations 1.21567 0.93628 1.02236 1.01256 1.21541 0.96936 0.99011 0.94683 0.93387 1.21585 0.78150 1.01765 0.97963 1.48107 1.07308 1.60405 1.17821 1.17350 0.84797 0.78118 0.81865 1.90784 1.74471 1.43180 1.36805 1.20134 0.91536 0.98868 1.08070 1.20935 0.90785 1.00454 1.00654 1.20194 0.96575 1.00464 1.06954 1.20925 0.84494 0.99764 1.00988 1.42297 1.06168 1.25088 1.37954 0.72438 1.21213 0.90641 0.99193 1.01355 1.22794 0.97570 0.81247 0.99844 1.88004 1.51800 1.21727 1.70159 1.21101 0.81468 0.97934 0.93446 1.22277 0.98572 0.98438 0.83106 1.22463 0.98865 0.99716 0.97136 1.20406 0.91249 0.95607 0.85480 0.92727 1.42600 1.76813 1.10843 1.06778 1.19606 1.33792 0.94472 0.88400 0.90181 1.25519 1.03129 0.96909 1.01390 1.69823 1.51947 1.11227 1.29281 0.85204 0.76610 0.78273 0.80066 1.21710 1.22839 1.19119 0.94088 0.91714 0.91923 0.89631 0.89034 0.83723 0.86790 0.88452 0.91713 0.85711 0.87687 0.90718 0.88104 0.88713 0.90964 0.94347 0.79883 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.03 71.98 0.65 -3.46 16 2 C -0.10 -3.30 2.44 -10.86 -0.03 -3.33 16 3 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.13 3.50 5.70 86.22 0.49 3.99 16 5 N -0.61 -16.25 2.98 -824.46 -2.46 -18.70 16 6 C 0.59 17.75 7.62 86.45 0.66 18.41 16 7 O -0.57 -21.08 16.39 -4.32 -0.07 -21.15 16 8 C -0.07 -1.89 6.39 40.37 0.26 -1.63 16 9 C -0.10 -2.53 10.71 22.40 0.24 -2.29 16 10 C -0.24 -4.85 6.02 -20.11 -0.12 -4.97 16 11 C 0.06 1.03 7.14 41.79 0.30 1.33 16 12 N -0.51 -9.52 4.73 -171.05 -0.81 -10.33 16 13 H 0.43 5.85 6.40 -92.71 -0.59 5.25 16 14 C -0.09 -0.87 6.56 30.15 0.20 -0.67 16 15 C 0.06 0.63 6.78 72.16 0.49 1.12 16 16 O -0.40 -6.75 10.74 -148.98 -1.60 -8.35 16 17 C 0.14 2.26 7.25 71.28 0.52 2.78 16 18 C 0.10 2.25 5.33 86.36 0.46 2.71 16 19 C -0.14 -4.48 5.66 30.67 0.17 -4.30 16 20 C 0.18 6.56 2.19 45.02 0.10 6.66 16 21 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 22 N -0.73 -35.04 4.41 -322.82 -1.42 -36.46 16 23 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 25 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 26 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 27 Si 0.97 44.93 29.55 68.60 2.03 46.95 16 28 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.04 1.58 7.36 -2.39 -0.02 1.56 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 40 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.10 1.88 4.19 -2.39 -0.01 1.87 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.37 19.75 7.51 -92.71 -0.70 19.06 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -72.13 377.95 1.34 -70.80 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.30 Total: 34.65 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.69 Total: 1.20 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -4.40 Total: -124.09 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.67 Total: -29.50 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.13 1.34 -70.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036069630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.003 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds