Wall clock time and date at job start Tue Mar 31 2020 17:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.51964 * 2 1 4 4 C 1.53197 * 109.49555 * 239.92378 * 2 1 3 5 5 N 1.46923 * 108.77496 * 185.40897 * 4 2 1 6 6 C 1.34780 * 120.63235 * 233.63206 * 5 4 2 7 7 O 1.21688 * 119.99583 * 359.83058 * 6 5 4 8 8 C 1.46674 * 119.99809 * 179.83303 * 6 5 4 9 9 C 1.38156 * 126.18929 * 208.90386 * 8 6 5 10 10 C 1.38943 * 106.94981 * 179.85045 * 9 8 6 11 11 C 1.36279 * 108.02089 * 0.47098 * 10 9 8 12 12 N 1.34746 * 108.83820 * 359.65094 * 11 10 9 13 13 H 0.96992 * 125.71732 * 180.10571 * 12 11 10 14 14 C 1.51090 * 122.58123 * 179.56659 * 11 10 9 15 15 C 1.53532 * 107.72291 * 344.18420 * 14 11 10 16 16 O 1.43002 * 109.69319 * 47.99993 * 15 14 11 17 17 C 1.43420 * 114.33103 * 288.96417 * 16 15 14 18 18 C 1.46923 * 118.73583 * 53.60954 * 5 4 2 19 19 C 1.53193 * 108.77940 * 306.38980 * 18 5 4 20 20 C 1.53033 * 109.50034 * 120.08728 * 2 1 3 21 21 H 1.09006 * 109.46051 * 301.33577 * 20 2 1 22 22 N 1.46495 * 109.46228 * 61.29456 * 20 2 1 23 23 C 1.36941 * 120.00047 * 205.07188 * 22 20 2 24 24 H 1.08002 * 120.00314 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00126 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00208 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99812 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47104 * 90.00767 * 27 25 23 29 29 H 1.48508 * 109.47120 * 210.00271 * 27 25 23 30 30 H 1.48498 * 109.47281 * 330.00601 * 27 25 23 31 31 H 1.08998 * 109.46773 * 299.91190 * 1 2 3 32 32 H 1.08994 * 109.47245 * 59.91788 * 1 2 3 33 33 H 1.08999 * 109.46827 * 179.91854 * 1 2 3 34 34 H 1.08993 * 109.58804 * 305.20197 * 4 2 1 35 35 H 1.09000 * 109.58507 * 65.48049 * 4 2 1 36 36 H 1.07998 * 126.52688 * 359.97438 * 9 8 6 37 37 H 1.09006 * 109.80888 * 103.72490 * 14 11 10 38 38 H 1.08998 * 109.80675 * 224.61145 * 14 11 10 39 39 H 1.08997 * 109.43030 * 287.93934 * 15 14 11 40 40 H 1.08998 * 109.40233 * 168.04529 * 15 14 11 41 41 H 1.08998 * 109.76679 * 291.10284 * 17 16 15 42 42 H 1.09007 * 109.80003 * 170.36006 * 17 16 15 43 43 H 1.08998 * 109.58721 * 186.60217 * 18 5 4 44 44 H 1.09008 * 109.58995 * 66.17914 * 18 5 4 45 45 H 1.09000 * 109.49923 * 174.58809 * 19 18 5 46 46 H 1.08997 * 109.49787 * 294.68493 * 19 18 5 47 47 H 0.97000 * 119.99975 * 25.07161 * 22 20 2 48 48 H 0.96998 * 120.00043 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 3.5046 -0.8290 -1.1698 6 6 4.2811 -0.3853 -2.1781 7 8 3.7712 0.1053 -3.1681 8 6 5.7407 -0.4940 -2.0821 9 6 6.6621 0.3451 -2.6785 10 6 7.9225 -0.1193 -2.3230 11 6 7.7597 -1.2213 -1.5380 12 7 6.4417 -1.4558 -1.3851 13 1 6.0512 -2.1796 -0.8709 14 6 8.9265 -1.9975 -0.9732 15 6 10.1843 -1.5807 -1.7487 16 8 10.2506 -0.1544 -1.8289 17 6 9.2741 0.4345 -2.6987 18 6 4.1053 -1.4266 0.0305 19 6 3.5710 -0.6951 1.2658 20 6 2.0409 -0.7232 1.2482 21 1 1.6583 -0.2247 2.1389 22 7 1.5785 -2.1131 1.2306 23 6 1.4470 -2.8059 2.4045 24 1 1.6846 -2.3278 3.3433 25 6 1.0093 -4.1231 2.3878 26 7 0.8824 -4.7888 3.5160 27 14 0.5990 -4.9504 0.7640 28 1 1.8151 -5.6086 0.2226 29 1 -0.4599 -5.9688 0.9809 30 1 0.1157 -3.9317 -0.2024 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6053 -1.7215 -1.2982 35 1 1.7615 -0.1591 -2.1391 36 1 6.4443 1.2006 -3.3007 37 1 9.0497 -1.7621 0.0840 38 1 8.7534 -3.0665 -1.0966 39 1 10.1454 -1.9989 -2.7545 40 1 11.0684 -1.9564 -1.2336 41 1 9.5017 0.1806 -3.7340 42 1 9.2757 1.5176 -2.5760 43 1 5.1896 -1.3245 -0.0140 44 1 3.8376 -2.4818 0.0864 45 1 3.9336 -1.1898 2.1669 46 1 3.9160 0.3388 1.2540 47 1 1.3654 -2.5427 0.3874 48 1 0.5762 -5.7091 3.5044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036069636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:10 Heat of formation + Delta-G solvation = -5.493869 kcal Electronic energy + Delta-G solvation = -29854.901237 eV Core-core repulsion = 25911.353844 eV Total energy + Delta-G solvation = -3943.547393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00159 -39.94317 -38.28993 -37.71336 -34.59948 -33.09006 -32.70538 -31.75998 -31.52838 -29.89738 -29.23552 -27.03107 -25.67241 -24.94147 -23.72521 -23.25081 -21.81868 -21.66381 -20.21851 -19.31202 -18.74604 -17.95470 -17.46548 -16.70079 -16.22675 -15.93869 -15.78082 -15.16766 -14.98129 -14.67622 -14.51755 -14.17670 -13.87553 -13.84307 -13.66262 -13.63889 -13.28248 -13.02861 -12.75932 -12.66281 -12.46788 -12.31652 -11.76347 -11.69301 -11.66775 -11.51357 -11.17932 -11.10239 -11.06172 -10.71613 -10.60524 -10.30797 -10.08201 -9.98727 -9.95444 -9.64786 -9.08809 -8.97215 -8.55670 -8.09524 -7.38819 -5.88172 -3.24042 1.40289 2.38104 2.75818 2.95020 3.24677 3.27970 3.34632 3.35811 3.58855 4.35093 4.44043 4.46878 4.58758 4.82967 4.85892 4.88783 4.98334 5.05045 5.11769 5.20180 5.21884 5.25506 5.32401 5.35636 5.50634 5.51212 5.52106 5.57887 5.62257 5.68037 5.78692 5.85379 5.94194 5.98178 6.11801 6.17238 6.30651 6.36482 6.42347 6.56317 6.56636 6.66470 6.70046 6.77318 6.88281 7.15955 7.44007 7.87998 8.14757 8.30847 9.08635 9.81142 10.00932 11.30106 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.003453 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.201630 B = 8106.356471 C = 9143.699055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.588 3.412 7 O -0.538 6.538 8 C -0.044 4.044 9 C -0.095 4.095 10 C -0.221 4.221 11 C 0.048 3.952 12 N -0.523 5.523 13 H 0.423 0.577 14 C -0.089 4.089 15 C 0.070 3.930 16 O -0.380 6.380 17 C 0.138 3.862 18 C 0.094 3.906 19 C -0.147 4.147 20 C 0.185 3.815 21 H 0.062 0.938 22 N -0.744 5.744 23 C -0.243 4.243 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.877 3.123 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.360 0.640 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.396 8.451 -10.869 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.334 5.334 6 C 0.376 3.624 7 O -0.416 6.416 8 C -0.157 4.157 9 C -0.121 4.121 10 C -0.227 4.227 11 C -0.071 4.071 12 N -0.123 5.123 13 H 0.267 0.733 14 C -0.127 4.127 15 C -0.008 4.008 16 O -0.299 6.299 17 C 0.061 3.939 18 C -0.029 4.029 19 C -0.188 4.188 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.373 4.373 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.579 5.579 27 Si 0.708 3.292 28 H -0.213 1.213 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.091 8.598 -10.953 20.534 hybrid contribution -0.869 -1.418 -0.783 1.838 sum 14.222 7.180 -11.736 19.788 Atomic orbital electron populations 1.21678 0.94032 1.02861 1.01042 1.21762 0.96652 0.99383 0.95384 0.90875 1.21678 0.78112 1.01213 0.99303 1.48083 1.07290 1.60058 1.17934 1.17095 0.84220 0.78275 0.82788 1.90806 1.73821 1.46054 1.30880 1.20411 0.91727 0.97372 1.06180 1.20725 0.89954 1.00264 1.01188 1.19885 0.96015 0.99925 1.06898 1.20298 0.84447 0.99245 1.03123 1.42479 1.05578 1.24841 1.39447 0.73337 1.21035 0.91237 0.99217 1.01186 1.22532 0.96767 0.81834 0.99633 1.88017 1.54775 1.19717 1.67348 1.21029 0.82467 0.97767 0.92661 1.22164 0.97041 0.98838 0.84821 1.22473 1.00167 0.99129 0.97035 1.20182 0.90734 0.86187 0.95405 0.92000 1.42852 1.80596 1.09438 1.05860 1.19061 1.37808 0.94072 0.86323 0.89122 1.24637 1.01448 0.96728 0.95993 1.69685 1.52936 1.10887 1.24408 0.86681 0.78197 0.79614 0.84724 1.21285 1.21604 1.20373 0.92232 0.93421 0.91646 0.91407 0.89147 0.83440 0.89077 0.89506 0.92557 0.88010 0.92111 0.88010 0.90646 0.90041 0.90125 0.92650 0.80628 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 2 C -0.11 -1.70 2.67 -90.50 -0.24 -1.94 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.87 5.41 -3.71 -0.02 1.84 16 5 N -0.60 -9.21 2.97 -174.31 -0.52 -9.73 16 6 C 0.59 9.43 7.63 -12.85 -0.10 9.33 16 7 O -0.54 -10.05 16.42 5.20 0.09 -9.96 16 8 C -0.04 -0.62 6.38 -81.75 -0.52 -1.14 16 9 C -0.10 -1.23 10.75 -39.35 -0.42 -1.65 16 10 C -0.22 -2.52 6.02 -105.01 -0.63 -3.16 16 11 C 0.05 0.52 7.14 -81.83 -0.58 -0.06 16 12 N -0.52 -6.13 4.72 -5.43 -0.03 -6.15 16 13 H 0.42 4.44 6.47 -40.82 -0.26 4.17 16 14 C -0.09 -0.70 6.56 -27.42 -0.18 -0.88 16 15 C 0.07 0.52 6.78 37.43 0.25 0.77 16 16 O -0.38 -3.77 10.75 -35.23 -0.38 -4.15 16 17 C 0.14 1.27 7.25 36.07 0.26 1.54 16 18 C 0.09 1.36 5.31 -3.71 -0.02 1.34 16 19 C -0.15 -2.27 5.78 -26.61 -0.15 -2.43 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 22 N -0.74 -15.69 3.44 -53.39 -0.18 -15.87 16 23 C -0.24 -6.27 10.41 -15.06 -0.16 -6.43 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -27.93 13.97 55.49 0.78 -27.15 16 27 Si 0.88 21.03 27.73 -169.99 -4.71 16.32 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.10 7.54 -51.93 -0.39 0.71 16 34 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 35 H 0.09 1.42 7.01 -51.93 -0.36 1.05 16 36 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.95 3.87 -51.93 -0.20 0.74 16 44 H 0.08 1.30 7.74 -51.92 -0.40 0.90 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.36 7.64 3.79 -40.82 -0.15 7.49 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -31.96 370.97 -9.02 -40.98 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.20 Total: 11.52 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.45 Total: -1.40 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.05 Total: -58.90 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.29 Total: -14.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.96 -9.02 -40.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036069636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.486 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds