Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 C 1.50702 * 109.47312 * 180.02562 * 8 6 5 10 10 C 1.35445 * 126.77472 * 90.00381 * 9 8 6 11 11 C 1.41382 * 103.98684 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.80593 * 179.97438 * 11 10 9 13 13 C 1.53003 * 117.49568 * 343.74092 * 12 11 10 14 14 C 1.53004 * 117.49743 * 275.08549 * 12 11 10 15 15 N 1.30178 * 106.39330 * 359.97438 * 11 10 9 16 16 O 1.20919 * 111.60427 * 359.72900 * 15 11 10 17 17 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 18 18 C 1.53191 * 108.89109 * 53.54119 * 17 5 4 19 19 C 1.53035 * 109.31327 * 305.29292 * 18 17 5 20 20 H 1.09003 * 109.46332 * 181.39145 * 19 18 17 21 21 N 1.46505 * 109.46145 * 301.35706 * 19 18 17 22 22 C 1.36937 * 120.00261 * 275.00453 * 21 19 18 23 23 H 1.07999 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00104 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00043 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99949 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47289 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47087 * 119.99822 * 26 24 22 29 29 H 1.48497 * 109.47272 * 239.99615 * 26 24 22 30 30 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 32 32 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 33 33 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 34 34 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08001 * 128.00867 * 359.97438 * 10 9 8 38 38 H 1.08996 * 115.55556 * 129.41117 * 12 11 10 39 39 H 1.08997 * 117.49960 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49666 * 145.02014 * 13 12 11 41 41 H 1.08993 * 117.49970 * 214.97811 * 14 12 11 42 42 H 1.09005 * 117.49456 * 359.97277 * 14 12 11 43 43 H 1.09002 * 109.58861 * 293.68122 * 17 5 4 44 44 H 1.08996 * 109.58519 * 173.40013 * 17 5 4 45 45 H 1.09003 * 109.49975 * 65.24379 * 18 17 5 46 46 H 1.09004 * 109.49655 * 185.34207 * 18 17 5 47 47 H 0.96995 * 119.99683 * 95.00026 * 21 19 18 48 48 H 0.96995 * 120.00130 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3882 2.1781 7 8 3.7808 0.1021 3.1655 8 6 5.7856 -0.5032 2.0774 9 6 6.4175 0.0588 3.3248 10 6 6.7136 -0.6187 4.4597 11 6 7.2828 0.3618 5.3044 12 6 7.7967 0.1576 6.7063 13 6 7.3701 -1.1176 7.4362 14 6 6.7818 0.2340 7.8487 15 7 7.2752 1.4760 4.6311 16 8 6.8037 1.3262 3.5278 17 6 4.1053 -1.4268 -0.0313 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7227 -1.2486 20 1 1.6581 -0.2238 -2.1390 21 7 1.5782 -2.1127 -1.2312 22 6 1.4467 -2.8053 -2.4051 23 1 1.6836 -2.3267 -3.3439 24 6 1.0090 -4.1224 -2.3886 25 7 0.7207 -4.7058 -1.2445 26 14 0.8289 -5.0670 -3.9901 27 1 1.2125 -4.1918 -5.1268 28 1 1.7127 -6.2601 -3.9631 29 1 -0.5822 -5.4999 -4.1535 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6033 -1.7211 1.2988 35 1 6.0634 -1.5518 1.9707 36 1 6.1354 0.0555 1.2093 37 1 6.5522 -1.6655 4.6706 38 1 8.8006 0.5358 6.8988 39 1 6.7182 -1.8090 6.9023 40 1 8.0934 -1.5780 8.1092 41 1 7.1182 0.6622 8.7929 42 1 5.7426 0.4324 7.5863 43 1 3.8375 -2.4819 -0.0876 44 1 5.1898 -1.3269 0.0118 45 1 3.9159 0.3392 -1.2540 46 1 3.9333 -1.1891 -2.1675 47 1 1.3652 -2.5423 -0.3881 48 1 0.4145 -5.6261 -1.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036072873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = 62.043201 kcal Electronic energy + Delta-G solvation = -28954.462795 eV Core-core repulsion = 25013.844029 eV Total energy + Delta-G solvation = -3940.618766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.98941 -40.11443 -37.83290 -37.79781 -34.37318 -33.83271 -33.12339 -32.69744 -31.44704 -29.26274 -28.87515 -26.07519 -24.89520 -24.76604 -23.53207 -23.04177 -22.24096 -21.71325 -20.51379 -19.41258 -18.30844 -17.81425 -17.40906 -17.22940 -16.71195 -16.11888 -15.57536 -15.44352 -14.79422 -14.65779 -14.33793 -14.15369 -14.01327 -13.78860 -13.42677 -13.34502 -12.91787 -12.57121 -12.37738 -12.27006 -12.23587 -11.86284 -11.67403 -11.56946 -11.41222 -11.26665 -11.23351 -10.96623 -10.84646 -10.67615 -10.54069 -10.53376 -10.20020 -9.93531 -9.89057 -9.83737 -9.60496 -9.33780 -8.98726 -8.32142 -7.03112 -5.84366 -3.12911 1.34966 2.07372 2.66390 2.86750 3.28130 3.37463 3.39363 3.44096 3.45940 3.88519 4.27859 4.50902 4.52813 4.54017 4.64506 4.81125 4.87100 5.03587 5.08294 5.13944 5.25824 5.29865 5.31959 5.35220 5.45708 5.52278 5.53775 5.56326 5.67110 5.74918 5.76315 5.79584 5.87264 5.91826 6.01731 6.03231 6.18774 6.26564 6.34409 6.46076 6.55858 6.63373 6.70866 6.87344 6.94779 7.59063 7.64522 8.18973 8.24172 8.34190 9.46049 10.02344 10.37361 11.38029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002462 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.397713 B =11367.995108 C =11716.126648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.515 3.485 7 O -0.544 6.544 8 C -0.063 4.063 9 C -0.001 4.001 10 C -0.216 4.216 11 C 0.047 3.953 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.164 4.164 15 N -0.361 5.361 16 O 0.105 5.895 17 C 0.110 3.890 18 C -0.151 4.151 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.169 0.831 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 8.007 10.931 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.302 3.698 7 O -0.422 6.422 8 C -0.103 4.103 9 C -0.065 4.065 10 C -0.237 4.237 11 C -0.111 4.111 12 C -0.105 4.105 13 C -0.200 4.200 14 C -0.202 4.202 15 N -0.063 5.063 16 O 0.038 5.962 17 C -0.012 4.012 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.187 0.813 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.794 9.453 11.526 19.644 hybrid contribution -0.328 -1.659 -0.781 1.862 sum 12.466 7.794 10.746 18.210 Atomic orbital electron populations 1.21667 0.94190 1.03202 1.00487 1.21702 0.96548 0.98874 0.95688 0.91576 1.21711 0.78129 1.01668 0.98670 1.48152 1.07271 1.59601 1.17954 1.20099 0.88166 0.78433 0.83098 1.90717 1.75321 1.45171 1.31027 1.20202 0.92848 1.03598 0.93699 1.23602 1.00187 0.84477 0.98270 1.22250 1.06372 1.02161 0.92963 1.22552 1.01810 0.89265 0.97462 1.20080 0.99618 1.04484 0.86339 1.23041 1.03594 0.90745 1.02642 1.23041 0.98920 1.00373 0.97824 1.73779 1.16452 1.23011 0.93093 1.84812 1.57316 1.27872 1.26217 1.21808 0.96338 0.99327 0.83776 1.22528 1.00541 0.98705 0.97390 1.20222 0.90787 0.87372 0.94894 0.93054 1.42488 1.78992 1.07699 1.06940 1.19260 1.37152 0.93819 0.86584 0.91179 1.24706 1.02266 0.97216 0.96598 1.69654 1.51761 1.13014 1.23610 0.86174 0.77314 0.79957 0.83043 1.20633 1.21983 1.21982 0.91022 0.93766 0.92765 0.89841 0.90483 0.85448 0.86298 0.81304 0.86063 0.88115 0.87826 0.87955 0.88329 0.89373 0.91148 0.93157 0.90582 0.78109 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.80 16 2 C -0.11 -1.69 2.67 -90.50 -0.24 -1.93 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.93 5.43 -3.56 -0.02 1.91 16 5 N -0.60 -8.74 2.98 -172.54 -0.51 -9.26 16 6 C 0.52 7.47 7.70 -10.99 -0.08 7.39 16 7 O -0.54 -9.93 15.47 5.56 0.09 -9.84 16 8 C -0.06 -0.66 4.61 -29.03 -0.13 -0.79 16 9 C 0.00 -0.02 5.98 -35.30 -0.21 -0.23 16 10 C -0.22 -2.56 10.40 -39.38 -0.41 -2.97 16 11 C 0.05 0.60 6.95 -82.10 -0.57 0.03 16 12 C -0.09 -0.84 6.33 -91.77 -0.58 -1.42 16 13 C -0.16 -1.24 10.05 -26.69 -0.27 -1.51 16 14 C -0.16 -1.41 10.24 -26.69 -0.27 -1.69 16 15 N -0.36 -5.27 12.07 33.42 0.40 -4.87 16 16 O 0.11 1.50 11.20 17.17 0.19 1.69 16 17 C 0.11 1.51 6.07 -3.71 -0.02 1.49 16 18 C -0.15 -2.24 5.78 -26.61 -0.15 -2.39 16 19 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -15.69 3.64 -53.39 -0.19 -15.89 16 22 C -0.24 -5.94 9.93 -15.06 -0.15 -6.09 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 26 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 34 H 0.08 1.37 6.64 -51.93 -0.35 1.02 16 35 H 0.13 1.01 7.94 -51.93 -0.41 0.59 16 36 H 0.12 0.98 7.69 -51.93 -0.40 0.58 16 37 H 0.17 1.62 7.62 -52.49 -0.40 1.22 16 38 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 0.78 7.34 -51.93 -0.38 0.40 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.47 7.74 -51.93 -0.40 1.06 16 44 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.38 9.03 5.93 -40.82 -0.24 8.78 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -31.12 387.41 -8.96 -40.08 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.42 Total: 9.10 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.05 Total: -7.47 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.42 Total: -55.58 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.28 Total: -8.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.12 -8.96 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036072873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.122 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds