Wall clock time and date at job start Tue Mar 31 2020 17:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 C 1.50702 * 109.47312 * 180.02562 * 8 6 5 10 10 C 1.35445 * 126.77472 * 90.00381 * 9 8 6 11 11 C 1.41382 * 103.98684 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.80593 * 179.97438 * 11 10 9 13 13 C 1.53003 * 117.49568 * 343.74092 * 12 11 10 14 14 C 1.53004 * 117.49743 * 275.08549 * 12 11 10 15 15 N 1.30178 * 106.39330 * 359.97438 * 11 10 9 16 16 O 1.20919 * 111.60427 * 359.72900 * 15 11 10 17 17 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 18 18 C 1.53191 * 108.89109 * 53.54119 * 17 5 4 19 19 C 1.53035 * 109.31327 * 305.29292 * 18 17 5 20 20 H 1.09003 * 109.46332 * 181.39145 * 19 18 17 21 21 N 1.46505 * 109.46145 * 301.35706 * 19 18 17 22 22 C 1.36937 * 120.00261 * 275.00453 * 21 19 18 23 23 H 1.07999 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00104 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00043 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99949 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47289 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47087 * 119.99822 * 26 24 22 29 29 H 1.48497 * 109.47272 * 239.99615 * 26 24 22 30 30 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 32 32 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 33 33 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 34 34 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08001 * 128.00867 * 359.97438 * 10 9 8 38 38 H 1.08996 * 115.55556 * 129.41117 * 12 11 10 39 39 H 1.08997 * 117.49960 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49666 * 145.02014 * 13 12 11 41 41 H 1.08993 * 117.49970 * 214.97811 * 14 12 11 42 42 H 1.09005 * 117.49456 * 359.97277 * 14 12 11 43 43 H 1.09002 * 109.58861 * 293.68122 * 17 5 4 44 44 H 1.08996 * 109.58519 * 173.40013 * 17 5 4 45 45 H 1.09003 * 109.49975 * 65.24379 * 18 17 5 46 46 H 1.09004 * 109.49655 * 185.34207 * 18 17 5 47 47 H 0.96995 * 119.99683 * 95.00026 * 21 19 18 48 48 H 0.96995 * 120.00130 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3882 2.1781 7 8 3.7808 0.1021 3.1655 8 6 5.7856 -0.5032 2.0774 9 6 6.4175 0.0588 3.3248 10 6 6.7136 -0.6187 4.4597 11 6 7.2828 0.3618 5.3044 12 6 7.7967 0.1576 6.7063 13 6 7.3701 -1.1176 7.4362 14 6 6.7818 0.2340 7.8487 15 7 7.2752 1.4760 4.6311 16 8 6.8037 1.3262 3.5278 17 6 4.1053 -1.4268 -0.0313 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7227 -1.2486 20 1 1.6581 -0.2238 -2.1390 21 7 1.5782 -2.1127 -1.2312 22 6 1.4467 -2.8053 -2.4051 23 1 1.6836 -2.3267 -3.3439 24 6 1.0090 -4.1224 -2.3886 25 7 0.7207 -4.7058 -1.2445 26 14 0.8289 -5.0670 -3.9901 27 1 1.2125 -4.1918 -5.1268 28 1 1.7127 -6.2601 -3.9631 29 1 -0.5822 -5.4999 -4.1535 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6033 -1.7211 1.2988 35 1 6.0634 -1.5518 1.9707 36 1 6.1354 0.0555 1.2093 37 1 6.5522 -1.6655 4.6706 38 1 8.8006 0.5358 6.8988 39 1 6.7182 -1.8090 6.9023 40 1 8.0934 -1.5780 8.1092 41 1 7.1182 0.6622 8.7929 42 1 5.7426 0.4324 7.5863 43 1 3.8375 -2.4819 -0.0876 44 1 5.1898 -1.3269 0.0118 45 1 3.9159 0.3392 -1.2540 46 1 3.9333 -1.1891 -2.1675 47 1 1.3652 -2.5423 -0.3881 48 1 0.4145 -5.6261 -1.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036072873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:27 Heat of formation + Delta-G solvation = 44.773022 kcal Electronic energy + Delta-G solvation = -28955.211686 eV Core-core repulsion = 25013.844029 eV Total energy + Delta-G solvation = -3941.367657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.94624 -41.33128 -39.15848 -38.50221 -35.85487 -34.88210 -34.36426 -33.85014 -32.91928 -30.88658 -29.89511 -27.36786 -26.28478 -25.63334 -25.22463 -23.83383 -23.02252 -22.97490 -21.55079 -20.43889 -19.62037 -19.21400 -18.82168 -18.22852 -17.87224 -16.99826 -16.75874 -16.55419 -16.26560 -15.87511 -15.53158 -15.48402 -15.03686 -14.90446 -14.74893 -14.62891 -14.26022 -13.96463 -13.57177 -13.32372 -13.05149 -12.95371 -12.87389 -12.82597 -12.64679 -12.54719 -12.43093 -12.36037 -12.05400 -12.03056 -11.93766 -11.86488 -11.55190 -11.37459 -11.14273 -11.06571 -10.82712 -10.69946 -10.33192 -9.59195 -8.88384 -7.85981 -5.11453 0.39659 1.16919 1.50642 1.53126 1.55517 1.60732 1.89810 2.22613 2.62316 2.69555 3.11352 3.42378 3.48439 3.52499 3.83438 3.88825 3.90829 3.96751 4.05117 4.09383 4.09890 4.14715 4.26160 4.34759 4.36109 4.44130 4.53045 4.62042 4.67120 4.71843 4.73739 4.75627 4.87895 4.91555 5.01142 5.05877 5.07099 5.08616 5.17170 5.18987 5.25467 5.33056 5.36804 5.51050 5.64598 5.67075 6.36412 6.44662 7.09607 7.24631 7.44165 8.20820 8.44007 9.37451 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.002462 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.397713 B =11367.995108 C =11716.126648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.125 3.875 5 N -0.596 5.596 6 C 0.515 3.485 7 O -0.586 6.586 8 C -0.055 4.055 9 C -0.009 4.009 10 C -0.221 4.221 11 C 0.042 3.958 12 C -0.105 4.105 13 C -0.145 4.145 14 C -0.168 4.168 15 N -0.392 5.392 16 O 0.086 5.914 17 C 0.114 3.886 18 C -0.144 4.144 19 C 0.170 3.830 20 H 0.045 0.955 21 N -0.724 5.724 22 C -0.221 4.221 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.960 3.040 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.303 1.303 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.190 0.810 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.374 0.626 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 8.574 10.668 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 H 0.103 0.897 4 C 0.002 3.998 5 N -0.328 5.328 6 C 0.304 3.696 7 O -0.467 6.467 8 C -0.095 4.095 9 C -0.073 4.073 10 C -0.242 4.242 11 C -0.116 4.116 12 C -0.124 4.124 13 C -0.182 4.182 14 C -0.206 4.206 15 N -0.098 5.098 16 O 0.022 5.978 17 C -0.008 4.008 18 C -0.184 4.184 19 C 0.061 3.939 20 H 0.063 0.937 21 N -0.365 5.365 22 C -0.353 4.353 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.792 3.208 27 H -0.192 1.192 28 H -0.226 1.226 29 H -0.231 1.231 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.207 0.793 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.135 0.865 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.207 0.793 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.863 10.065 11.211 21.164 hybrid contribution -0.986 -1.740 -0.651 2.104 sum 13.877 8.325 10.560 19.323 Atomic orbital electron populations 1.21608 0.94406 1.01450 1.01614 1.21617 0.96358 0.99345 0.94461 0.89709 1.21496 0.79513 1.00147 0.98610 1.48169 1.06571 1.59552 1.18479 1.20760 0.89774 0.77094 0.81975 1.90707 1.76478 1.46980 1.32550 1.20345 0.89208 1.05936 0.94005 1.24013 1.00051 0.84000 0.99224 1.22616 1.05906 1.03077 0.92646 1.23109 1.00961 0.88931 0.98578 1.20272 1.00252 1.06621 0.85212 1.23159 1.03305 0.89918 1.01813 1.23089 0.97652 1.01673 0.98198 1.73764 1.18050 1.24280 0.93704 1.84763 1.57879 1.28848 1.26301 1.21826 0.98915 0.97228 0.82834 1.22401 0.97817 1.00534 0.97684 1.20466 0.92851 0.85046 0.95504 0.93672 1.42595 1.79141 1.09254 1.05549 1.19591 1.34327 0.93686 0.87733 0.90654 1.25344 1.03804 0.98507 0.98893 1.69799 1.54096 1.12802 1.25335 0.85253 0.76263 0.78690 0.80632 1.19157 1.22582 1.23139 0.94118 0.92025 0.92262 0.90433 0.92994 0.82207 0.83177 0.79298 0.85023 0.88312 0.85322 0.85998 0.90333 0.92435 0.86470 0.90328 0.91123 0.79295 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.05 71.98 0.65 -3.45 16 2 C -0.10 -2.95 2.67 -10.72 -0.03 -2.98 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.13 3.99 5.43 86.31 0.47 4.45 16 5 N -0.60 -16.41 2.98 -818.19 -2.44 -18.85 16 6 C 0.51 13.92 7.70 87.66 0.67 14.60 16 7 O -0.59 -21.01 15.47 -3.03 -0.05 -21.06 16 8 C -0.06 -0.97 4.61 29.10 0.13 -0.83 16 9 C -0.01 -0.21 5.98 25.04 0.15 -0.06 16 10 C -0.22 -4.90 10.40 22.40 0.23 -4.67 16 11 C 0.04 1.04 6.95 43.58 0.30 1.34 16 12 C -0.10 -1.89 6.33 -11.54 -0.07 -1.96 16 13 C -0.14 -1.89 10.05 30.62 0.31 -1.59 16 14 C -0.17 -2.70 10.24 30.62 0.31 -2.39 16 15 N -0.39 -11.38 12.07 -49.55 -0.60 -11.98 16 16 O 0.09 2.40 11.20 71.62 0.80 3.21 16 17 C 0.11 2.84 6.07 86.36 0.52 3.36 16 18 C -0.14 -3.88 5.78 30.67 0.18 -3.70 16 19 C 0.17 5.73 2.53 45.01 0.11 5.85 16 20 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 21 N -0.72 -31.70 3.64 -322.81 -1.17 -32.88 16 22 C -0.22 -11.04 9.93 84.03 0.83 -10.21 16 23 H 0.08 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 25 N -0.97 -56.02 13.06 21.65 0.28 -55.74 16 26 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.56 7.02 -2.39 -0.02 2.54 16 34 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 35 H 0.16 1.80 7.94 -2.39 -0.02 1.78 16 36 H 0.15 1.74 7.69 -2.39 -0.02 1.72 16 37 H 0.19 3.21 7.62 -2.91 -0.02 3.18 16 38 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 1.34 7.34 -2.39 -0.02 1.32 16 40 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.84 7.74 -2.39 -0.02 1.82 16 44 H 0.12 1.84 5.93 -2.39 -0.01 1.82 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.37 18.03 5.93 -92.71 -0.55 17.49 16 48 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -70.03 387.41 4.52 -65.50 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.42 Total: 31.53 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.25 Total: -5.69 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.93 Total: -119.45 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.75 Total: -17.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.03 4.52 -65.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036072873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.274 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds