Wall clock time and date at job start Tue Mar 31 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 C 1.50699 * 109.47315 * 265.00709 * 9 8 7 11 11 O 1.21287 * 119.99879 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00270 * 180.02562 * 10 9 8 13 13 C 1.46921 * 120.62844 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77621 * 233.59080 * 13 12 10 15 15 C 1.53038 * 109.31144 * 305.36370 * 14 13 12 16 16 H 1.09000 * 109.46422 * 301.34500 * 15 14 13 17 17 N 1.46503 * 109.46177 * 181.38324 * 15 14 13 18 18 C 1.36943 * 119.99826 * 85.00276 * 17 15 14 19 19 H 1.08002 * 119.99911 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99928 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99824 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47170 * 59.99958 * 22 20 18 24 24 H 1.48500 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46986 * 299.99941 * 22 20 18 26 26 C 1.53046 * 109.53829 * 61.36700 * 15 14 13 27 27 H 1.09000 * 109.49409 * 58.58493 * 26 15 14 28 28 C 1.52998 * 109.49782 * 178.65150 * 26 15 14 29 29 C 1.46932 * 120.63211 * 179.71832 * 12 10 9 30 30 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 32 32 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 33 33 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 34 34 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 36 36 H 1.09002 * 109.47116 * 25.00398 * 9 8 7 37 37 H 1.08994 * 109.47415 * 145.00430 * 9 8 7 38 38 H 1.08998 * 109.59096 * 353.37734 * 13 12 10 39 39 H 1.08996 * 109.58898 * 113.66326 * 13 12 10 40 40 H 1.08993 * 109.49984 * 65.31949 * 14 13 12 41 41 H 1.09007 * 109.49670 * 185.41675 * 14 13 12 42 42 H 0.96992 * 120.00365 * 265.00354 * 17 15 14 43 43 H 0.97002 * 120.00105 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.47471 * 59.99982 * 28 26 15 45 45 H 1.09001 * 109.47110 * 180.02562 * 28 26 15 46 46 H 1.09005 * 109.46984 * 299.99666 * 28 26 15 47 47 H 1.08990 * 109.58269 * 246.19624 * 29 12 10 48 48 H 1.09000 * 109.58156 * 6.62425 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 6 4.4642 -0.4258 -1.4168 11 8 3.9530 0.1804 -2.3346 12 7 5.1927 -1.5326 -1.6630 13 6 5.8175 -2.2778 -0.5618 14 6 7.3120 -2.4360 -0.8589 15 6 7.4888 -3.0821 -2.2349 16 1 6.9896 -4.0510 -2.2481 17 7 8.9164 -3.2652 -2.5084 18 6 9.5645 -4.3799 -2.0471 19 1 9.0231 -5.1242 -1.4821 20 6 10.9172 -4.5531 -2.3058 21 7 11.5769 -3.6463 -2.9948 22 14 11.8010 -6.0740 -1.6772 23 1 11.1675 -7.2878 -2.2521 24 1 13.2284 -6.0204 -2.0833 25 1 11.7099 -6.1226 -0.1957 26 6 6.8762 -2.1783 -3.3073 27 1 7.3581 -1.2011 -3.2782 28 6 7.0831 -2.8089 -4.6858 29 6 5.3724 -2.0202 -3.0374 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2244 2.3567 0.0003 34 1 1.4006 4.5174 0.0011 35 1 5.0999 2.6329 0.0011 36 1 5.2581 0.2825 0.4331 37 1 3.7934 -0.7169 0.5881 38 1 5.6866 -1.7295 0.3711 39 1 5.3539 -3.2606 -0.4761 40 1 7.7899 -1.4564 -0.8528 41 1 7.7692 -3.0691 -0.0983 42 1 9.4026 -2.5969 -3.0162 43 1 12.5221 -3.7675 -3.1759 44 1 6.6000 -3.7855 -4.7149 45 1 6.6470 -2.1646 -5.4493 46 1 8.1501 -2.9255 -4.8756 47 1 4.8748 -2.9831 -3.1514 48 1 4.9476 -1.3016 -3.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036083652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:34 Heat of formation + Delta-G solvation = -27.483657 kcal Electronic energy + Delta-G solvation = -29028.245434 eV Core-core repulsion = 25083.744492 eV Total energy + Delta-G solvation = -3944.500942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06936 -39.88754 -38.44202 -37.60822 -34.58763 -33.65153 -32.70273 -31.45131 -31.43918 -29.37259 -28.60179 -27.81067 -26.06076 -24.87610 -23.15447 -23.00620 -22.44110 -21.62604 -19.86600 -18.94994 -18.49772 -17.40620 -17.17784 -17.01764 -16.16016 -15.93664 -15.32572 -15.15650 -14.95715 -14.92650 -14.50321 -14.14298 -13.86971 -13.77319 -13.57296 -13.38764 -13.27809 -13.09273 -12.56318 -12.46381 -12.25079 -12.02113 -11.87898 -11.75068 -11.56176 -11.42485 -11.14799 -10.93150 -10.80818 -10.62057 -10.39485 -10.23637 -9.82648 -9.73189 -9.70073 -9.61819 -9.33591 -8.93934 -8.88564 -8.42925 -6.97369 -5.78274 -3.07037 0.86138 1.14573 2.74658 2.81938 3.11760 3.41791 3.46627 3.47683 3.63611 4.19074 4.38164 4.52545 4.56611 4.62334 4.67551 4.75912 4.79708 4.98679 5.06629 5.08664 5.15164 5.27502 5.29865 5.38052 5.38467 5.47948 5.53706 5.63829 5.68649 5.70597 5.80831 5.82099 5.98614 6.09729 6.15957 6.30555 6.32693 6.40175 6.44284 6.54727 6.65324 6.81722 6.88841 6.93362 7.05921 7.55852 7.67027 7.81553 8.29878 8.40019 9.51294 10.09029 10.43845 11.44143 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002431 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.337206 B =11517.019834 C =11636.872016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.182 3.818 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.146 4.146 9 C -0.090 4.090 10 C 0.520 3.480 11 O -0.544 6.544 12 N -0.607 5.607 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.109 4.109 27 H 0.069 0.931 28 C -0.136 4.136 29 C 0.121 3.879 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.726 9.007 7.781 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.149 4.149 9 C -0.130 4.130 10 C 0.308 3.692 11 O -0.422 6.422 12 N -0.340 5.340 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.129 4.129 27 H 0.088 0.912 28 C -0.194 4.194 29 C -0.002 4.002 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.442 9.726 7.354 25.541 hybrid contribution 0.082 -1.428 0.263 1.454 sum -22.360 8.298 7.618 25.037 Atomic orbital electron populations 1.23132 0.77833 1.04381 1.01524 1.86074 1.21803 1.26270 1.87506 1.19096 0.91808 0.84655 0.91575 1.22156 1.01370 0.93191 1.11676 1.22530 0.90367 0.96880 0.92700 1.67734 1.07064 1.31905 1.15164 1.22548 1.00309 0.86096 0.92077 1.19773 0.90827 0.96511 1.07797 1.20442 1.00934 0.95815 0.95803 1.20373 0.78072 0.79966 0.90815 1.90677 1.48804 1.56332 1.46376 1.48147 1.50788 1.26606 1.08420 1.21880 0.94911 0.96195 0.88694 1.22691 0.92653 1.02176 1.01826 1.20187 0.86905 0.95243 0.90283 0.93479 1.42406 1.03613 1.24875 1.65186 1.19165 0.91790 0.98099 1.27908 0.91309 1.24726 0.96743 0.98391 1.00994 1.69646 1.08940 1.35114 1.44343 0.86303 0.78872 0.82817 0.78384 1.21327 1.21759 1.21333 1.21815 0.94052 1.00295 0.96779 0.91248 1.21658 1.03461 0.99537 0.94742 1.21765 0.96519 0.99428 0.82450 0.87872 0.92427 0.92323 0.84479 0.82640 0.82170 0.87542 0.87631 0.90486 0.91472 0.92121 0.90556 0.78218 0.93461 0.93101 0.93875 0.90764 0.91738 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.16 16 2 O -0.31 -3.26 9.77 -18.94 -0.18 -3.44 16 3 C 0.18 2.08 6.70 -38.82 -0.26 1.82 16 4 C -0.26 -2.50 9.11 -39.30 -0.36 -2.86 16 5 C 0.13 1.32 11.17 -17.60 -0.20 1.12 16 6 N -0.51 -6.21 10.36 -13.33 -0.14 -6.35 16 7 C 0.15 1.72 10.84 -17.59 -0.19 1.53 16 8 C -0.15 -1.74 4.40 -104.34 -0.46 -2.20 16 9 C -0.09 -0.98 3.95 -29.04 -0.11 -1.10 16 10 C 0.52 7.51 7.69 -10.99 -0.08 7.43 16 11 O -0.54 -9.78 15.45 5.55 0.09 -9.69 16 12 N -0.61 -8.47 2.97 -172.52 -0.51 -8.98 16 13 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 14 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 15 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -17.08 4.41 -53.38 -0.24 -17.31 16 18 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 C -0.11 -1.81 2.47 -90.29 -0.22 -2.03 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 C -0.14 -2.24 9.03 37.16 0.34 -1.90 16 29 C 0.12 1.79 5.75 -3.50 -0.02 1.77 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.27 7.71 -51.92 -0.40 -0.13 16 32 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 33 H 0.14 0.90 6.47 -52.49 -0.34 0.56 16 34 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.11 0.95 7.61 -51.93 -0.40 0.55 16 37 H 0.11 1.02 7.57 -51.93 -0.39 0.63 16 38 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.38 9.87 7.50 -40.82 -0.31 9.57 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -33.58 387.79 -8.07 -41.64 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.48 Total: 8.43 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.15 Total: -0.19 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.16 Total: -59.45 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.10 Total: -13.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.58 -8.07 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036083652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.160 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds