Wall clock time and date at job start Tue Mar 31 2020 17:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 C 1.50699 * 109.47315 * 265.00709 * 9 8 7 11 11 O 1.21287 * 119.99879 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00270 * 180.02562 * 10 9 8 13 13 C 1.46921 * 120.62844 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77621 * 233.59080 * 13 12 10 15 15 C 1.53038 * 109.31144 * 305.36370 * 14 13 12 16 16 H 1.09000 * 109.46422 * 301.34500 * 15 14 13 17 17 N 1.46503 * 109.46177 * 181.38324 * 15 14 13 18 18 C 1.36943 * 119.99826 * 85.00276 * 17 15 14 19 19 H 1.08002 * 119.99911 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99928 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99824 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47170 * 59.99958 * 22 20 18 24 24 H 1.48500 * 109.47061 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46986 * 299.99941 * 22 20 18 26 26 C 1.53046 * 109.53829 * 61.36700 * 15 14 13 27 27 H 1.09000 * 109.49409 * 58.58493 * 26 15 14 28 28 C 1.52998 * 109.49782 * 178.65150 * 26 15 14 29 29 C 1.46932 * 120.63211 * 179.71832 * 12 10 9 30 30 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 32 32 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 33 33 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 34 34 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 36 36 H 1.09002 * 109.47116 * 25.00398 * 9 8 7 37 37 H 1.08994 * 109.47415 * 145.00430 * 9 8 7 38 38 H 1.08998 * 109.59096 * 353.37734 * 13 12 10 39 39 H 1.08996 * 109.58898 * 113.66326 * 13 12 10 40 40 H 1.08993 * 109.49984 * 65.31949 * 14 13 12 41 41 H 1.09007 * 109.49670 * 185.41675 * 14 13 12 42 42 H 0.96992 * 120.00365 * 265.00354 * 17 15 14 43 43 H 0.97002 * 120.00105 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.47471 * 59.99982 * 28 26 15 45 45 H 1.09001 * 109.47110 * 180.02562 * 28 26 15 46 46 H 1.09005 * 109.46984 * 299.99666 * 28 26 15 47 47 H 1.08990 * 109.58269 * 246.19624 * 29 12 10 48 48 H 1.09000 * 109.58156 * 6.62425 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 6 4.4642 -0.4258 -1.4168 11 8 3.9530 0.1804 -2.3346 12 7 5.1927 -1.5326 -1.6630 13 6 5.8175 -2.2778 -0.5618 14 6 7.3120 -2.4360 -0.8589 15 6 7.4888 -3.0821 -2.2349 16 1 6.9896 -4.0510 -2.2481 17 7 8.9164 -3.2652 -2.5084 18 6 9.5645 -4.3799 -2.0471 19 1 9.0231 -5.1242 -1.4821 20 6 10.9172 -4.5531 -2.3058 21 7 11.5769 -3.6463 -2.9948 22 14 11.8010 -6.0740 -1.6772 23 1 11.1675 -7.2878 -2.2521 24 1 13.2284 -6.0204 -2.0833 25 1 11.7099 -6.1226 -0.1957 26 6 6.8762 -2.1783 -3.3073 27 1 7.3581 -1.2011 -3.2782 28 6 7.0831 -2.8089 -4.6858 29 6 5.3724 -2.0202 -3.0374 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2244 2.3567 0.0003 34 1 1.4006 4.5174 0.0011 35 1 5.0999 2.6329 0.0011 36 1 5.2581 0.2825 0.4331 37 1 3.7934 -0.7169 0.5881 38 1 5.6866 -1.7295 0.3711 39 1 5.3539 -3.2606 -0.4761 40 1 7.7899 -1.4564 -0.8528 41 1 7.7692 -3.0691 -0.0983 42 1 9.4026 -2.5969 -3.0162 43 1 12.5221 -3.7675 -3.1759 44 1 6.6000 -3.7855 -4.7149 45 1 6.6470 -2.1646 -5.4493 46 1 8.1501 -2.9255 -4.8756 47 1 4.8748 -2.9831 -3.1514 48 1 4.9476 -1.3016 -3.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036083652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:33 Heat of formation + Delta-G solvation = -49.344704 kcal Electronic energy + Delta-G solvation = -29029.193400 eV Core-core repulsion = 25083.744492 eV Total energy + Delta-G solvation = -3945.448908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88623 -40.99231 -39.17661 -38.92747 -36.13611 -34.72839 -34.08100 -32.98595 -32.18597 -31.01402 -29.51458 -28.41239 -27.30983 -26.47734 -24.45920 -23.88858 -23.40505 -23.01983 -21.22007 -20.08952 -19.25508 -19.00518 -18.20991 -18.16025 -17.09240 -16.80641 -16.63726 -16.30409 -15.97119 -15.83247 -15.67331 -15.44003 -15.17570 -14.98298 -14.82397 -14.45051 -14.37739 -14.11482 -14.03229 -13.56613 -13.23401 -13.12486 -12.99032 -12.80225 -12.79040 -12.71979 -12.47245 -12.43878 -12.18809 -12.11350 -11.99384 -11.82874 -11.63723 -11.13176 -10.97519 -10.78753 -10.51735 -10.09428 -9.71812 -9.62317 -8.94122 -7.89013 -5.16485 0.08971 0.36085 1.49839 1.51891 1.57749 1.65470 2.04840 2.19207 2.59727 2.83004 3.43930 3.47138 3.62899 3.67126 3.79833 3.84596 3.89154 3.97533 4.07007 4.13224 4.20637 4.33940 4.34653 4.35645 4.41958 4.42937 4.53154 4.62288 4.68919 4.69806 4.75289 4.80822 4.84529 4.86229 4.94845 5.01599 5.04150 5.07975 5.21300 5.34590 5.41695 5.53636 5.58581 5.59018 5.67425 6.21470 6.32236 6.46048 7.03786 7.19338 7.38787 8.15514 8.38461 9.34454 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002431 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.337206 B =11517.019834 C =11636.872016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.169 3.831 4 C -0.261 4.261 5 C 0.124 3.876 6 N -0.534 5.534 7 C 0.130 3.870 8 C -0.165 4.165 9 C -0.082 4.082 10 C 0.518 3.482 11 O -0.584 6.584 12 N -0.608 5.608 13 C 0.114 3.886 14 C -0.143 4.143 15 C 0.179 3.821 16 H 0.047 0.953 17 N -0.732 5.732 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.302 1.302 25 H -0.277 1.277 26 C -0.099 4.099 27 H 0.052 0.948 28 C -0.130 4.130 29 C 0.128 3.872 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.080 0.920 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.281 8.461 9.489 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.115 3.885 4 C -0.281 4.281 5 C -0.032 4.032 6 N -0.246 5.246 7 C -0.025 4.025 8 C -0.168 4.168 9 C -0.122 4.122 10 C 0.308 3.692 11 O -0.464 6.464 12 N -0.340 5.340 13 C -0.009 4.009 14 C -0.184 4.184 15 C 0.071 3.929 16 H 0.065 0.935 17 N -0.371 5.371 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.228 1.228 25 H -0.203 1.203 26 C -0.119 4.119 27 H 0.070 0.930 28 C -0.188 4.188 29 C 0.005 3.995 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.186 0.814 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.058 9.158 9.104 28.189 hybrid contribution 0.728 -1.225 -0.296 1.455 sum -24.330 7.933 8.808 27.064 Atomic orbital electron populations 1.23424 0.75855 1.05882 1.02580 1.86041 1.23926 1.26086 1.87397 1.19345 0.92043 0.85554 0.91541 1.22471 1.02828 0.92388 1.10438 1.23071 0.89946 0.98391 0.91796 1.67741 1.08322 1.32343 1.16216 1.22761 1.00930 0.86348 0.92466 1.19922 0.91560 0.96682 1.08641 1.20467 1.02231 0.96002 0.93521 1.20976 0.77126 0.79234 0.91875 1.90657 1.50430 1.57367 1.47930 1.48222 1.50704 1.26734 1.08311 1.21937 0.91848 0.97663 0.89403 1.22482 0.95525 1.00862 0.99551 1.20427 0.84171 0.95953 0.92363 0.93477 1.42597 1.05577 1.23898 1.65034 1.19562 0.91918 0.98489 1.26134 0.90388 1.25489 0.97857 1.01295 1.02338 1.69814 1.08639 1.37197 1.46670 0.85292 0.77021 0.79780 0.78162 1.20585 1.22832 1.20325 1.21677 0.95289 0.98779 0.96190 0.92993 1.21577 1.01373 1.00457 0.95413 1.21607 0.94640 1.00007 0.83220 0.86290 0.90562 0.92003 0.81615 0.79833 0.81430 0.85414 0.85827 0.87073 0.89650 0.93386 0.91284 0.79867 0.94324 0.92324 0.92003 0.94080 0.90162 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 113.37 1.12 1.28 16 2 O -0.32 -6.20 9.77 -90.68 -0.89 -7.08 16 3 C 0.17 3.57 6.70 22.76 0.15 3.72 16 4 C -0.26 -4.41 9.11 22.45 0.20 -4.21 16 5 C 0.12 2.27 11.17 84.60 0.95 3.22 16 6 N -0.53 -12.66 10.36 -196.08 -2.03 -14.70 16 7 C 0.13 3.01 10.84 84.62 0.92 3.92 16 8 C -0.16 -3.71 4.40 -19.68 -0.09 -3.80 16 9 C -0.08 -1.62 3.95 29.10 0.12 -1.51 16 10 C 0.52 14.12 7.69 87.66 0.67 14.79 16 11 O -0.58 -20.60 15.45 -3.05 -0.05 -20.64 16 12 N -0.61 -15.71 2.97 -818.13 -2.43 -18.14 16 13 C 0.11 2.49 6.34 86.36 0.55 3.03 16 14 C -0.14 -4.40 5.66 30.67 0.17 -4.22 16 15 C 0.18 6.54 2.19 45.02 0.10 6.64 16 16 H 0.05 1.73 8.08 -2.39 -0.02 1.72 16 17 N -0.73 -35.17 4.41 -322.80 -1.42 -36.59 16 18 C -0.23 -12.13 9.93 84.03 0.83 -11.30 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 22 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.10 -3.26 2.47 -10.58 -0.03 -3.28 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 C -0.13 -4.29 9.03 71.98 0.65 -3.64 16 29 C 0.13 3.62 5.75 86.50 0.50 4.11 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.48 7.71 -2.38 -0.02 0.46 16 32 H 0.06 0.58 7.71 -2.39 -0.02 0.56 16 33 H 0.17 1.67 6.47 -2.91 -0.02 1.65 16 34 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.13 1.93 7.61 -2.39 -0.02 1.91 16 37 H 0.12 1.98 7.57 -2.39 -0.02 1.97 16 38 H 0.11 1.73 5.93 -2.39 -0.01 1.72 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.37 19.70 7.50 -92.71 -0.70 19.01 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.62 7.36 -2.38 -0.02 1.60 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -74.34 387.79 3.04 -71.30 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.27 Total: 32.39 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 7.28 Total: 4.87 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -5.60 Total: -128.13 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.93 Total: -27.73 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.34 3.04 -71.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036083652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.951 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds