Wall clock time and date at job start Tue Mar 31 2020 17:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52209 * 2 1 4 4 C 1.53619 * 109.43476 * 120.21459 * 2 1 3 5 5 N 1.46931 * 108.54563 * 174.72440 * 4 2 1 6 6 C 1.34777 * 120.62625 * 126.36404 * 5 4 2 7 7 O 1.21584 * 119.99549 * 174.32950 * 6 5 4 8 8 C 1.47505 * 120.00339 * 354.60690 * 6 5 4 9 9 O 1.35183 * 127.15638 * 353.37541 * 8 6 5 10 10 N 1.21480 * 111.56061 * 179.91809 * 9 8 6 11 11 C 1.29076 * 111.67958 * 359.91762 * 10 9 8 12 12 C 1.35256 * 127.15349 * 173.06457 * 8 6 5 13 13 C 1.50111 * 131.33015 * 1.06832 * 12 8 6 14 14 C 1.53582 * 108.07280 * 163.21977 * 13 12 8 15 15 C 1.53009 * 109.80363 * 49.83935 * 14 13 12 16 16 C 1.50646 * 130.33699 * 180.30592 * 11 10 9 17 17 C 1.46923 * 118.73560 * 306.09541 * 5 4 2 18 18 C 1.53194 * 108.77831 * 53.85872 * 17 5 4 19 19 C 1.53042 * 109.49581 * 239.92618 * 2 1 3 20 20 H 1.09001 * 109.46005 * 298.69825 * 19 2 1 21 21 N 1.46499 * 109.46164 * 58.66233 * 19 2 1 22 22 C 1.36941 * 120.00180 * 205.06600 * 21 19 2 23 23 H 1.08007 * 119.99710 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00210 * 179.97438 * 22 21 19 25 25 N 1.31611 * 119.99768 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99897 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47117 * 59.99912 * 26 24 22 28 28 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47026 * 300.00220 * 26 24 22 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47451 * 300.07504 * 1 2 3 32 32 H 1.09002 * 109.47096 * 60.07916 * 1 2 3 33 33 H 1.08997 * 109.74068 * 54.98538 * 4 2 1 34 34 H 1.09002 * 109.66293 * 294.41670 * 4 2 1 35 35 H 1.08998 * 109.89902 * 43.47483 * 13 12 8 36 36 H 1.08991 * 109.59165 * 282.79186 * 13 12 8 37 37 H 1.08996 * 109.41513 * 289.74039 * 14 13 12 38 38 H 1.08996 * 109.41555 * 169.94086 * 14 13 12 39 39 H 1.08990 * 109.37946 * 168.10923 * 15 14 13 40 40 H 1.09002 * 109.37911 * 48.44427 * 15 14 13 41 41 H 1.09000 * 109.74093 * 282.88819 * 16 11 10 42 42 H 1.09003 * 109.73457 * 43.59553 * 16 11 10 43 43 H 1.09004 * 109.58472 * 173.64651 * 17 5 4 44 44 H 1.08999 * 109.58672 * 294.06619 * 17 5 4 45 45 H 1.09002 * 109.49619 * 65.31366 * 18 17 5 46 46 H 1.08995 * 109.49795 * 185.41045 * 18 17 5 47 47 H 0.96998 * 120.00118 * 25.07204 * 21 19 2 48 48 H 0.97000 * 119.99873 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7290 1.2519 5 7 3.5047 -0.8292 1.1694 6 6 4.2811 -0.3865 2.1782 7 8 5.4829 -0.5677 2.1448 8 6 3.6722 0.3124 3.3256 9 8 2.3824 0.6948 3.4578 10 7 2.1878 1.2491 4.5211 11 6 3.2658 1.3166 5.2279 12 6 4.2871 0.6988 4.4667 13 6 5.7143 0.5744 4.9147 14 6 5.9318 1.5427 6.0869 15 6 4.8286 1.3505 7.1295 16 6 3.4997 1.9022 6.5960 17 6 4.1053 -1.4266 -0.0310 18 6 3.5708 -0.6948 -1.2662 19 6 2.0407 -0.7229 -1.2485 20 1 1.6967 -1.7572 -1.2355 21 7 1.5264 -0.0527 -2.4453 22 6 1.3950 -0.7492 -3.6170 23 1 1.6702 -1.7928 -3.6586 24 6 0.9072 -0.1143 -4.7509 25 7 0.5715 1.1573 -4.7000 26 14 0.7273 -1.0646 -6.3491 27 1 -0.2049 -2.2026 -6.1460 28 1 0.1900 -0.1656 -7.4018 29 1 2.0545 -1.5811 -6.7699 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6085 -1.7284 1.2983 34 1 1.7630 -0.1665 2.1431 35 1 6.3845 0.8324 4.0947 36 1 5.9074 -0.4476 5.2405 37 1 5.9078 2.5683 5.7188 38 1 6.9012 1.3456 6.5446 39 1 5.0987 1.8791 8.0436 40 1 4.7178 0.2882 7.3473 41 1 3.5532 2.9887 6.5272 42 1 2.6872 1.6145 7.2633 43 1 5.1896 -1.3245 0.0135 44 1 3.8376 -2.4817 -0.0871 45 1 3.9158 0.3391 -1.2541 46 1 3.9334 -1.1894 -2.1673 47 1 1.2791 0.8845 -2.4079 48 1 0.2310 1.6011 -5.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036115406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:41 Heat of formation + Delta-G solvation = 33.328242 kcal Electronic energy + Delta-G solvation = -29611.767774 eV Core-core repulsion = 25669.903835 eV Total energy + Delta-G solvation = -3941.863940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.15248 -40.11692 -38.22860 -37.64267 -34.69191 -33.27089 -32.67281 -32.60150 -31.70740 -30.20460 -29.27285 -26.40453 -25.77771 -24.89692 -23.69819 -23.48518 -22.14369 -21.45350 -20.34490 -20.01702 -19.28441 -17.89760 -17.62351 -16.96846 -16.42651 -16.15430 -15.35241 -15.13894 -14.89010 -14.69535 -14.29408 -14.16184 -13.93395 -13.77965 -13.50662 -13.29395 -13.11027 -12.93045 -12.77480 -12.48004 -12.25033 -12.01640 -11.67261 -11.54879 -11.37361 -11.33090 -11.21232 -10.91948 -10.86049 -10.79001 -10.62184 -10.42125 -10.28724 -10.21680 -10.13514 -9.74716 -9.65827 -9.61738 -8.90766 -8.60799 -6.97286 -5.77909 -3.06678 0.68982 1.87301 2.42360 2.90547 3.07413 3.42862 3.47736 3.48458 3.61692 4.09097 4.40111 4.44880 4.54603 4.57048 4.66510 4.85357 4.99518 5.05921 5.10701 5.14166 5.21884 5.30755 5.39910 5.40724 5.47015 5.53732 5.57615 5.63748 5.65708 5.67623 5.74302 5.77103 5.89245 5.94128 5.97228 6.05467 6.09786 6.28611 6.36850 6.41109 6.45161 6.61842 6.82658 6.87976 7.03813 7.24903 7.67913 7.79519 8.02793 8.40312 9.51734 10.08803 10.43694 11.44507 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.002645 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.980453 B =10584.537990 C =11192.281258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.071 0.929 4 C 0.100 3.900 5 N -0.590 5.590 6 C 0.602 3.398 7 O -0.520 6.520 8 C -0.073 4.073 9 O 0.101 5.899 10 N -0.337 5.337 11 C 0.017 3.983 12 C -0.124 4.124 13 C -0.049 4.049 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.040 4.040 17 C 0.114 3.886 18 C -0.152 4.152 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 -1.037 24.210 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.090 0.910 4 C -0.023 4.023 5 N -0.321 5.321 6 C 0.387 3.613 7 O -0.397 6.397 8 C -0.137 4.137 9 O 0.036 5.964 10 N -0.043 5.043 11 C -0.144 4.144 12 C -0.129 4.129 13 C -0.086 4.086 14 C -0.159 4.159 15 C -0.157 4.157 16 C -0.078 4.078 17 C -0.008 4.008 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.190 -0.867 24.168 25.230 hybrid contribution 0.352 -0.278 -1.048 1.140 sum 7.542 -1.145 23.120 24.346 Atomic orbital electron populations 1.21668 0.93858 1.01885 1.02055 1.21806 0.96798 1.00000 0.94196 0.91023 1.22483 0.77980 1.01704 1.00140 1.48102 1.07635 1.58752 1.17632 1.16640 0.85783 0.78637 0.80240 1.90819 1.13189 1.57923 1.77796 1.23477 0.85279 1.06119 0.98819 1.85384 1.26005 1.55778 1.29268 1.73435 1.23904 1.12329 0.94628 1.23374 0.88790 1.02305 0.99930 1.21099 0.99081 1.00054 0.92624 1.20113 0.89180 1.00691 0.98639 1.21678 0.98924 0.99883 0.95430 1.21621 0.93512 1.01962 0.98585 1.20129 0.98852 1.00399 0.88449 1.21846 0.98976 0.96887 0.83091 1.22716 1.00199 1.00587 0.95807 1.20217 0.90398 0.95742 0.86382 0.93274 1.42388 1.76504 1.11386 1.05735 1.19168 1.36006 0.94069 0.87732 0.91266 1.24726 1.02047 0.96015 0.98046 1.69644 1.49923 1.09462 1.29014 0.86298 0.77746 0.78712 0.83595 1.21301 1.21767 1.21318 0.92966 0.93621 0.90626 0.90586 0.88388 0.88763 0.89597 0.91367 0.90601 0.90457 0.91270 0.89288 0.89452 0.89351 0.91156 0.92119 0.90266 0.78195 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.03 37.16 0.34 -1.81 16 2 C -0.11 -1.71 2.47 -90.28 -0.22 -1.94 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.10 1.34 5.66 -3.49 -0.02 1.32 16 5 N -0.59 -8.42 2.97 -173.74 -0.52 -8.93 16 6 C 0.60 8.89 7.69 -12.48 -0.10 8.79 16 7 O -0.52 -8.52 15.32 5.29 0.08 -8.44 16 8 C -0.07 -0.99 6.94 -36.87 -0.26 -1.25 16 9 O 0.10 1.38 7.87 13.84 0.11 1.49 16 10 N -0.34 -4.50 12.03 33.15 0.40 -4.10 16 11 C 0.02 0.19 7.21 -82.51 -0.60 -0.40 16 12 C -0.12 -1.47 6.03 -104.70 -0.63 -2.10 16 13 C -0.05 -0.46 5.64 -27.87 -0.16 -0.62 16 14 C -0.12 -0.81 5.88 -26.42 -0.16 -0.97 16 15 C -0.12 -0.70 5.83 -26.49 -0.15 -0.85 16 16 C -0.04 -0.30 6.32 -27.67 -0.17 -0.48 16 17 C 0.11 1.64 6.41 -3.71 -0.02 1.61 16 18 C -0.15 -2.60 5.66 -26.61 -0.15 -2.76 16 19 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 N -0.72 -17.10 4.41 -53.38 -0.24 -17.33 16 22 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 23 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 26 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.41 7.36 -51.93 -0.38 1.02 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.28 3.86 -54.31 -0.21 1.07 16 35 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.28 7.04 -51.93 -0.37 0.91 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 47 H 0.38 9.86 7.51 -40.82 -0.31 9.55 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -30.65 376.48 -9.03 -39.68 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.54 Total: 6.96 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.70 Total: -5.12 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.37 Total: -57.24 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.19 Total: -6.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.65 -9.03 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.005 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds