Wall clock time and date at job start Tue Mar 31 2020 17:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52209 * 2 1 4 4 C 1.53619 * 109.43476 * 120.21459 * 2 1 3 5 5 N 1.46931 * 108.54563 * 174.72440 * 4 2 1 6 6 C 1.34777 * 120.62625 * 126.36404 * 5 4 2 7 7 O 1.21584 * 119.99549 * 174.32950 * 6 5 4 8 8 C 1.47505 * 120.00339 * 354.60690 * 6 5 4 9 9 O 1.35183 * 127.15638 * 353.37541 * 8 6 5 10 10 N 1.21480 * 111.56061 * 179.91809 * 9 8 6 11 11 C 1.29076 * 111.67958 * 359.91762 * 10 9 8 12 12 C 1.35256 * 127.15349 * 173.06457 * 8 6 5 13 13 C 1.50111 * 131.33015 * 1.06832 * 12 8 6 14 14 C 1.53582 * 108.07280 * 163.21977 * 13 12 8 15 15 C 1.53009 * 109.80363 * 49.83935 * 14 13 12 16 16 C 1.50646 * 130.33699 * 180.30592 * 11 10 9 17 17 C 1.46923 * 118.73560 * 306.09541 * 5 4 2 18 18 C 1.53194 * 108.77831 * 53.85872 * 17 5 4 19 19 C 1.53042 * 109.49581 * 239.92618 * 2 1 3 20 20 H 1.09001 * 109.46005 * 298.69825 * 19 2 1 21 21 N 1.46499 * 109.46164 * 58.66233 * 19 2 1 22 22 C 1.36941 * 120.00180 * 205.06600 * 21 19 2 23 23 H 1.08007 * 119.99710 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00210 * 179.97438 * 22 21 19 25 25 N 1.31611 * 119.99768 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99897 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47117 * 59.99912 * 26 24 22 28 28 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47026 * 300.00220 * 26 24 22 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47451 * 300.07504 * 1 2 3 32 32 H 1.09002 * 109.47096 * 60.07916 * 1 2 3 33 33 H 1.08997 * 109.74068 * 54.98538 * 4 2 1 34 34 H 1.09002 * 109.66293 * 294.41670 * 4 2 1 35 35 H 1.08998 * 109.89902 * 43.47483 * 13 12 8 36 36 H 1.08991 * 109.59165 * 282.79186 * 13 12 8 37 37 H 1.08996 * 109.41513 * 289.74039 * 14 13 12 38 38 H 1.08996 * 109.41555 * 169.94086 * 14 13 12 39 39 H 1.08990 * 109.37946 * 168.10923 * 15 14 13 40 40 H 1.09002 * 109.37911 * 48.44427 * 15 14 13 41 41 H 1.09000 * 109.74093 * 282.88819 * 16 11 10 42 42 H 1.09003 * 109.73457 * 43.59553 * 16 11 10 43 43 H 1.09004 * 109.58472 * 173.64651 * 17 5 4 44 44 H 1.08999 * 109.58672 * 294.06619 * 17 5 4 45 45 H 1.09002 * 109.49619 * 65.31366 * 18 17 5 46 46 H 1.08995 * 109.49795 * 185.41045 * 18 17 5 47 47 H 0.96998 * 120.00118 * 25.07204 * 21 19 2 48 48 H 0.97000 * 119.99873 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7290 1.2519 5 7 3.5047 -0.8292 1.1694 6 6 4.2811 -0.3865 2.1782 7 8 5.4829 -0.5677 2.1448 8 6 3.6722 0.3124 3.3256 9 8 2.3824 0.6948 3.4578 10 7 2.1878 1.2491 4.5211 11 6 3.2658 1.3166 5.2279 12 6 4.2871 0.6988 4.4667 13 6 5.7143 0.5744 4.9147 14 6 5.9318 1.5427 6.0869 15 6 4.8286 1.3505 7.1295 16 6 3.4997 1.9022 6.5960 17 6 4.1053 -1.4266 -0.0310 18 6 3.5708 -0.6948 -1.2662 19 6 2.0407 -0.7229 -1.2485 20 1 1.6967 -1.7572 -1.2355 21 7 1.5264 -0.0527 -2.4453 22 6 1.3950 -0.7492 -3.6170 23 1 1.6702 -1.7928 -3.6586 24 6 0.9072 -0.1143 -4.7509 25 7 0.5715 1.1573 -4.7000 26 14 0.7273 -1.0646 -6.3491 27 1 -0.2049 -2.2026 -6.1460 28 1 0.1900 -0.1656 -7.4018 29 1 2.0545 -1.5811 -6.7699 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6085 -1.7284 1.2983 34 1 1.7630 -0.1665 2.1431 35 1 6.3845 0.8324 4.0947 36 1 5.9074 -0.4476 5.2405 37 1 5.9078 2.5683 5.7188 38 1 6.9012 1.3456 6.5446 39 1 5.0987 1.8791 8.0436 40 1 4.7178 0.2882 7.3473 41 1 3.5532 2.9887 6.5272 42 1 2.6872 1.6145 7.2633 43 1 5.1896 -1.3245 0.0135 44 1 3.8376 -2.4817 -0.0871 45 1 3.9158 0.3391 -1.2541 46 1 3.9334 -1.1894 -2.1673 47 1 1.2791 0.8845 -2.4079 48 1 0.2310 1.6011 -5.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036115406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:40 Heat of formation + Delta-G solvation = 15.712058 kcal Electronic energy + Delta-G solvation = -29612.531670 eV Core-core repulsion = 25669.903835 eV Total energy + Delta-G solvation = -3942.627835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.09178 -41.33176 -39.29457 -38.62033 -36.26374 -34.32839 -34.19638 -33.42348 -33.07028 -31.46971 -30.56755 -27.65511 -27.04771 -26.02712 -25.04040 -24.29509 -23.61254 -22.66695 -21.35549 -20.95669 -20.47402 -19.18506 -18.85293 -18.46342 -17.56563 -17.18618 -16.69237 -16.33660 -15.99803 -15.72209 -15.49110 -15.46021 -15.05572 -14.89841 -14.79841 -14.45416 -14.26617 -14.04309 -13.87493 -13.52068 -13.39651 -13.14761 -12.87785 -12.81707 -12.79668 -12.74976 -12.49192 -12.19972 -12.03122 -11.90927 -11.87824 -11.85120 -11.66145 -11.54754 -11.38629 -11.11898 -10.96550 -10.85351 -10.61416 -9.81925 -8.96598 -7.90538 -5.18106 -0.33610 0.98509 1.36316 1.48852 1.50933 1.56687 1.79123 1.99236 2.58435 2.83623 3.14665 3.42482 3.59005 3.70853 3.74090 3.84124 3.90075 3.95667 4.02644 4.09247 4.26024 4.31470 4.32861 4.40547 4.42663 4.43956 4.52866 4.68033 4.75449 4.79186 4.82981 4.86504 4.92185 4.97044 4.98508 5.04646 5.10765 5.14502 5.15600 5.27610 5.29566 5.40400 5.43335 5.48175 5.55180 5.58578 6.07840 6.30849 6.67720 7.02563 7.37512 8.13462 8.36623 9.32818 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.002645 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.980453 B =10584.537990 C =11192.281258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.055 0.945 4 C 0.109 3.891 5 N -0.592 5.592 6 C 0.603 3.397 7 O -0.540 6.540 8 C -0.095 4.095 9 O 0.087 5.913 10 N -0.357 5.357 11 C 0.023 3.977 12 C -0.120 4.120 13 C -0.052 4.052 14 C -0.118 4.118 15 C -0.114 4.114 16 C -0.043 4.043 17 C 0.123 3.877 18 C -0.141 4.141 19 C 0.179 3.821 20 H 0.053 0.947 21 N -0.731 5.731 22 C -0.231 4.231 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.278 1.278 28 H -0.300 1.300 29 H -0.280 1.280 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -2.111 26.868 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.074 0.926 4 C -0.014 4.014 5 N -0.323 5.323 6 C 0.389 3.611 7 O -0.419 6.419 8 C -0.159 4.159 9 O 0.024 5.976 10 N -0.065 5.065 11 C -0.139 4.139 12 C -0.125 4.125 13 C -0.089 4.089 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.081 4.081 17 C 0.001 3.999 18 C -0.182 4.182 19 C 0.071 3.929 20 H 0.071 0.929 21 N -0.369 5.369 22 C -0.363 4.363 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.204 1.204 28 H -0.227 1.227 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.931 -1.991 26.847 28.065 hybrid contribution 0.175 0.073 -1.757 1.767 sum 8.106 -1.918 25.091 26.438 Atomic orbital electron populations 1.21576 0.93501 1.02276 1.01413 1.21674 0.97014 0.99103 0.94141 0.92637 1.22453 0.77488 1.02601 0.98852 1.48121 1.07924 1.58700 1.17506 1.16755 0.85541 0.78250 0.80504 1.90800 1.13959 1.58713 1.78401 1.23375 0.85831 1.07451 0.99210 1.85324 1.25981 1.56504 1.29742 1.73421 1.24954 1.13230 0.94924 1.24030 0.87797 1.01033 1.01001 1.21542 1.00290 0.98677 0.91969 1.20245 0.87324 1.01958 0.99387 1.21697 1.00435 0.98837 0.94571 1.21640 0.92062 1.02343 0.99130 1.20404 1.00306 1.00996 0.86415 1.21732 0.98905 0.97500 0.81745 1.22502 0.98907 0.99787 0.97025 1.20441 0.91092 0.95690 0.85708 0.92862 1.42571 1.76790 1.10867 1.06715 1.19563 1.33773 0.94414 0.88542 0.90445 1.25488 1.03194 0.96918 1.01282 1.69809 1.51994 1.11075 1.29313 0.85292 0.77845 0.77397 0.79719 1.20381 1.22703 1.20609 0.92016 0.91367 0.94096 0.88477 0.87490 0.90161 0.88920 0.91546 0.88545 0.87729 0.91217 0.88081 0.88222 0.89251 0.88955 0.94006 0.91371 0.79734 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.03 71.98 0.65 -3.37 16 2 C -0.10 -3.13 2.47 -10.57 -0.03 -3.16 16 3 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.11 2.78 5.66 86.51 0.49 3.27 16 5 N -0.59 -16.31 2.97 -821.87 -2.44 -18.75 16 6 C 0.60 17.47 7.69 86.69 0.67 18.13 16 7 O -0.54 -17.46 15.32 -3.98 -0.06 -17.53 16 8 C -0.10 -2.52 6.94 24.03 0.17 -2.36 16 9 O 0.09 2.32 7.87 59.52 0.47 2.79 16 10 N -0.36 -9.13 12.03 -50.85 -0.61 -9.75 16 11 C 0.02 0.48 7.21 43.77 0.32 0.79 16 12 C -0.12 -2.70 6.03 -19.91 -0.12 -2.82 16 13 C -0.05 -0.90 5.64 29.86 0.17 -0.73 16 14 C -0.12 -1.25 5.88 30.79 0.18 -1.06 16 15 C -0.11 -0.94 5.83 30.75 0.18 -0.76 16 16 C -0.04 -0.53 6.32 29.99 0.19 -0.34 16 17 C 0.12 3.41 6.41 86.36 0.55 3.96 16 18 C -0.14 -4.86 5.66 30.67 0.17 -4.68 16 19 C 0.18 6.66 2.19 45.02 0.10 6.76 16 20 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 21 N -0.73 -35.46 4.41 -322.80 -1.42 -36.88 16 22 C -0.23 -12.39 9.93 84.03 0.83 -11.56 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 26 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 30 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.11 2.66 3.86 -40.07 -0.15 2.50 16 35 H 0.08 1.63 7.68 -2.39 -0.02 1.61 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.51 7.04 -2.39 -0.02 2.49 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.37 19.81 7.51 -92.71 -0.70 19.12 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.49 376.48 3.37 -64.12 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.13 Total: 28.87 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.99 Total: -1.80 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -4.19 Total: -124.28 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.41 Total: -14.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -67.49 3.37 -64.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.835 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds