Wall clock time and date at job start Tue Mar 31 2020 17:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52537 * 2 1 4 4 C 1.53619 * 109.43184 * 120.21481 * 2 1 3 5 5 N 1.46929 * 108.54453 * 174.72782 * 4 2 1 6 6 C 1.34771 * 120.63343 * 126.36500 * 5 4 2 7 7 O 1.21584 * 119.99902 * 174.32457 * 6 5 4 8 8 C 1.47505 * 119.99986 * 354.60201 * 6 5 4 9 9 O 1.35183 * 127.15638 * 353.37538 * 8 6 5 10 10 N 1.21480 * 111.55931 * 179.97438 * 9 8 6 11 11 C 1.29069 * 111.68138 * 359.92210 * 10 9 8 12 12 C 1.35256 * 127.15330 * 173.06984 * 8 6 5 13 13 C 1.50107 * 131.32973 * 1.10233 * 12 8 6 14 14 C 1.53574 * 108.07715 * 163.18250 * 13 12 8 15 15 C 1.53010 * 109.80501 * 49.82520 * 14 13 12 16 16 C 1.50647 * 130.33886 * 180.30445 * 11 10 9 17 17 C 1.46933 * 118.73169 * 306.09109 * 5 4 2 18 18 C 1.53187 * 108.77873 * 53.86058 * 17 5 4 19 19 C 1.53042 * 109.49544 * 239.92440 * 2 1 3 20 20 H 1.09004 * 109.45304 * 58.67131 * 19 2 1 21 21 N 1.46495 * 109.45912 * 298.70276 * 19 2 1 22 22 C 1.36942 * 120.00074 * 154.93689 * 21 19 2 23 23 H 1.07996 * 119.99927 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00149 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99742 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47238 * 59.99695 * 26 24 22 28 28 H 1.48500 * 109.47258 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47294 * 300.00062 * 26 24 22 30 30 H 1.08994 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46765 * 300.08051 * 1 2 3 32 32 H 1.08999 * 109.47060 * 60.07439 * 1 2 3 33 33 H 1.08997 * 109.74068 * 54.98315 * 4 2 1 34 34 H 1.09002 * 109.66293 * 294.41448 * 4 2 1 35 35 H 1.09004 * 109.91536 * 43.42564 * 13 12 8 36 36 H 1.09005 * 109.57799 * 282.74175 * 13 12 8 37 37 H 1.08996 * 109.42035 * 289.71966 * 14 13 12 38 38 H 1.09006 * 109.36058 * 169.88611 * 14 13 12 39 39 H 1.08998 * 109.37926 * 168.10820 * 15 14 13 40 40 H 1.08994 * 109.38178 * 48.44263 * 15 14 13 41 41 H 1.08998 * 109.74315 * 282.88558 * 16 11 10 42 42 H 1.09001 * 109.73862 * 43.59044 * 16 11 10 43 43 H 1.09004 * 109.58446 * 173.65118 * 17 5 4 44 44 H 1.08999 * 109.58705 * 294.07091 * 17 5 4 45 45 H 1.09002 * 109.49340 * 65.31453 * 18 17 5 46 46 H 1.08995 * 109.49708 * 185.37857 * 18 17 5 47 47 H 0.96996 * 120.00418 * 334.93058 * 21 19 2 48 48 H 0.96999 * 119.99484 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7290 1.2519 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3866 2.1782 7 8 5.4829 -0.5678 2.1448 8 6 3.6722 0.3124 3.3256 9 8 2.3824 0.6949 3.4578 10 7 2.1881 1.2502 4.5206 11 6 3.2662 1.3185 5.2270 12 6 4.2871 0.6988 4.4666 13 6 5.7145 0.5751 4.9144 14 6 5.9320 1.5438 6.0861 15 6 4.8290 1.3520 7.1290 16 6 3.5005 1.9054 6.5945 17 6 4.1053 -1.4267 -0.0310 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6581 -0.2241 -2.1389 21 7 1.5783 -2.1129 -1.2310 22 6 1.4468 -2.8056 -2.4050 23 1 1.6836 -2.3271 -3.3437 24 6 1.0080 -4.1225 -2.3885 25 7 0.7189 -4.7055 -1.2444 26 14 0.8280 -5.0671 -3.9899 27 1 2.1439 -5.1359 -4.6747 28 1 0.3478 -6.4425 -3.7021 29 1 -0.1502 -4.3740 -4.8662 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.6084 -1.7284 1.2983 34 1 1.7630 -0.1664 2.1431 35 1 6.3846 0.8328 4.0942 36 1 5.9077 -0.4469 5.2407 37 1 5.9080 2.5693 5.7177 38 1 6.9014 1.3457 6.5435 39 1 5.0993 1.8810 8.0428 40 1 4.7182 0.2899 7.3472 41 1 3.5540 2.9919 6.5246 42 1 2.6882 1.6184 7.2624 43 1 5.1896 -1.3246 0.0135 44 1 3.8375 -2.4818 -0.0870 45 1 3.9159 0.3389 -1.2541 46 1 3.9338 -1.1892 -2.1672 47 1 1.3653 -2.5427 -0.3879 48 1 0.4127 -5.6258 -1.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036115408.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:46 Heat of formation + Delta-G solvation = 35.636233 kcal Electronic energy + Delta-G solvation = -30048.679164 eV Core-core repulsion = 26106.915306 eV Total energy + Delta-G solvation = -3941.763858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.05795 -40.01288 -38.18173 -37.63800 -34.36189 -33.15236 -32.66692 -32.51909 -31.62533 -30.06902 -29.15397 -26.27826 -25.80957 -24.81926 -23.76729 -23.39117 -22.66836 -21.36951 -20.27807 -19.79260 -18.57658 -17.79966 -17.37270 -17.22977 -16.24371 -15.98718 -15.26011 -15.13509 -14.66065 -14.54599 -14.24003 -14.20574 -13.95771 -13.81538 -13.39745 -13.26516 -13.05222 -12.86116 -12.70680 -12.51132 -12.16738 -11.92049 -11.60159 -11.41123 -11.28271 -11.26133 -11.15226 -10.89017 -10.82040 -10.72679 -10.53828 -10.36986 -10.26805 -10.10620 -10.06046 -9.82095 -9.56020 -9.54077 -8.93125 -8.34755 -6.98568 -5.79458 -3.07891 0.80050 1.95623 2.56130 3.04313 3.24638 3.42428 3.47692 3.48132 3.69488 4.19479 4.47463 4.51790 4.57331 4.64580 4.75086 4.92722 5.08125 5.12114 5.17306 5.21796 5.35785 5.38721 5.46359 5.51903 5.57185 5.63520 5.65534 5.70441 5.75550 5.77482 5.84113 5.88007 5.95287 6.02088 6.03173 6.11404 6.23616 6.32783 6.42115 6.48111 6.52495 6.71179 6.75818 6.92748 6.94435 7.45965 7.68268 7.93220 8.15515 8.39130 9.50706 10.06732 10.41745 11.42945 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.002954 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.646239 B = 9477.556431 C = 9872.131528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.099 3.901 5 N -0.584 5.584 6 C 0.598 3.402 7 O -0.524 6.524 8 C -0.069 4.069 9 O 0.101 5.899 10 N -0.340 5.340 11 C 0.017 3.983 12 C -0.126 4.126 13 C -0.049 4.049 14 C -0.121 4.121 15 C -0.119 4.119 16 C -0.040 4.040 17 C 0.121 3.879 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 14.143 14.997 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.086 0.914 4 C -0.024 4.024 5 N -0.314 5.314 6 C 0.383 3.617 7 O -0.401 6.401 8 C -0.133 4.133 9 O 0.036 5.964 10 N -0.046 5.046 11 C -0.145 4.145 12 C -0.131 4.131 13 C -0.086 4.086 14 C -0.158 4.158 15 C -0.157 4.157 16 C -0.078 4.078 17 C 0.000 4.000 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.720 14.336 14.945 21.772 hybrid contribution 0.328 -0.950 -0.686 1.217 sum 7.048 13.386 14.259 20.789 Atomic orbital electron populations 1.21676 0.93982 1.03311 1.00631 1.21770 0.96717 0.98797 0.95325 0.91392 1.22422 0.78166 1.02436 0.99355 1.48084 1.07573 1.58068 1.17707 1.16652 0.85833 0.78886 0.80319 1.90808 1.13245 1.58287 1.77801 1.23554 0.85090 1.05754 0.98916 1.85397 1.26062 1.55747 1.29238 1.73419 1.23858 1.12496 0.94781 1.23358 0.88829 1.02356 0.99911 1.21081 0.99090 1.00299 0.92670 1.20105 0.89222 1.00724 0.98550 1.21674 0.98898 0.99786 0.95474 1.21635 0.93528 1.02028 0.98527 1.20126 0.98862 1.00240 0.88521 1.21711 0.97742 0.98519 0.82063 1.22547 1.00274 0.98791 0.97455 1.20241 0.90843 0.87380 0.94815 0.92922 1.42464 1.79001 1.07701 1.06935 1.19170 1.37287 0.93905 0.86535 0.91272 1.24704 1.02239 0.97183 0.96614 1.69634 1.51646 1.13112 1.23714 0.86305 0.77756 0.79191 0.83124 1.21356 1.21821 1.21368 0.90957 0.93573 0.92682 0.89705 0.88774 0.88825 0.89580 0.91459 0.90660 0.90519 0.91203 0.89383 0.89499 0.90047 0.89420 0.93247 0.90459 0.78140 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.80 16 2 C -0.11 -1.67 2.69 -90.28 -0.24 -1.92 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.10 1.57 5.35 -3.49 -0.02 1.55 16 5 N -0.58 -9.61 2.97 -173.74 -0.52 -10.13 16 6 C 0.60 9.82 7.69 -12.49 -0.10 9.72 16 7 O -0.52 -9.41 15.32 5.29 0.08 -9.33 16 8 C -0.07 -1.03 6.94 -36.87 -0.26 -1.28 16 9 O 0.10 1.48 7.87 13.84 0.11 1.59 16 10 N -0.34 -4.80 12.03 33.15 0.40 -4.40 16 11 C 0.02 0.20 7.21 -82.51 -0.60 -0.40 16 12 C -0.13 -1.63 6.03 -104.70 -0.63 -2.26 16 13 C -0.05 -0.51 5.64 -27.87 -0.16 -0.66 16 14 C -0.12 -0.88 5.87 -26.43 -0.16 -1.04 16 15 C -0.12 -0.79 5.84 -26.46 -0.15 -0.95 16 16 C -0.04 -0.32 6.32 -27.64 -0.17 -0.50 16 17 C 0.12 2.09 6.16 -3.71 -0.02 2.07 16 18 C -0.15 -2.55 5.78 -26.61 -0.15 -2.70 16 19 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.33 3.64 -53.38 -0.19 -16.52 16 22 C -0.24 -6.17 9.93 -15.05 -0.15 -6.32 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 26 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.50 6.63 -51.93 -0.34 1.16 16 34 H 0.09 1.40 3.86 -54.31 -0.21 1.19 16 35 H 0.09 1.05 7.68 -51.93 -0.40 0.66 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 44 H 0.09 1.74 7.74 -51.93 -0.40 1.34 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.38 9.29 5.92 -40.82 -0.24 9.05 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -29.57 372.53 -8.93 -38.50 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.39 Total: 7.93 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.74 Total: -3.78 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.41 Total: -57.30 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.19 Total: -7.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.57 -8.93 -38.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115408.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.140 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds