Wall clock time and date at job start Tue Mar 31 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52537 * 2 1 4 4 C 1.53619 * 109.43184 * 120.21481 * 2 1 3 5 5 N 1.46929 * 108.54453 * 174.72782 * 4 2 1 6 6 C 1.34771 * 120.63343 * 126.36500 * 5 4 2 7 7 O 1.21584 * 119.99902 * 174.32457 * 6 5 4 8 8 C 1.47505 * 119.99986 * 354.60201 * 6 5 4 9 9 O 1.35183 * 127.15638 * 353.37538 * 8 6 5 10 10 N 1.21480 * 111.55931 * 179.97438 * 9 8 6 11 11 C 1.29069 * 111.68138 * 359.92210 * 10 9 8 12 12 C 1.35256 * 127.15330 * 173.06984 * 8 6 5 13 13 C 1.50107 * 131.32973 * 1.10233 * 12 8 6 14 14 C 1.53574 * 108.07715 * 163.18250 * 13 12 8 15 15 C 1.53010 * 109.80501 * 49.82520 * 14 13 12 16 16 C 1.50647 * 130.33886 * 180.30445 * 11 10 9 17 17 C 1.46933 * 118.73169 * 306.09109 * 5 4 2 18 18 C 1.53187 * 108.77873 * 53.86058 * 17 5 4 19 19 C 1.53042 * 109.49544 * 239.92440 * 2 1 3 20 20 H 1.09004 * 109.45304 * 58.67131 * 19 2 1 21 21 N 1.46495 * 109.45912 * 298.70276 * 19 2 1 22 22 C 1.36942 * 120.00074 * 154.93689 * 21 19 2 23 23 H 1.07996 * 119.99927 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00149 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99742 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47238 * 59.99695 * 26 24 22 28 28 H 1.48500 * 109.47258 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47294 * 300.00062 * 26 24 22 30 30 H 1.08994 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46765 * 300.08051 * 1 2 3 32 32 H 1.08999 * 109.47060 * 60.07439 * 1 2 3 33 33 H 1.08997 * 109.74068 * 54.98315 * 4 2 1 34 34 H 1.09002 * 109.66293 * 294.41448 * 4 2 1 35 35 H 1.09004 * 109.91536 * 43.42564 * 13 12 8 36 36 H 1.09005 * 109.57799 * 282.74175 * 13 12 8 37 37 H 1.08996 * 109.42035 * 289.71966 * 14 13 12 38 38 H 1.09006 * 109.36058 * 169.88611 * 14 13 12 39 39 H 1.08998 * 109.37926 * 168.10820 * 15 14 13 40 40 H 1.08994 * 109.38178 * 48.44263 * 15 14 13 41 41 H 1.08998 * 109.74315 * 282.88558 * 16 11 10 42 42 H 1.09001 * 109.73862 * 43.59044 * 16 11 10 43 43 H 1.09004 * 109.58446 * 173.65118 * 17 5 4 44 44 H 1.08999 * 109.58705 * 294.07091 * 17 5 4 45 45 H 1.09002 * 109.49340 * 65.31453 * 18 17 5 46 46 H 1.08995 * 109.49708 * 185.37857 * 18 17 5 47 47 H 0.96996 * 120.00418 * 334.93058 * 21 19 2 48 48 H 0.96999 * 119.99484 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7290 1.2519 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3866 2.1782 7 8 5.4829 -0.5678 2.1448 8 6 3.6722 0.3124 3.3256 9 8 2.3824 0.6949 3.4578 10 7 2.1881 1.2502 4.5206 11 6 3.2662 1.3185 5.2270 12 6 4.2871 0.6988 4.4666 13 6 5.7145 0.5751 4.9144 14 6 5.9320 1.5438 6.0861 15 6 4.8290 1.3520 7.1290 16 6 3.5005 1.9054 6.5945 17 6 4.1053 -1.4267 -0.0310 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6581 -0.2241 -2.1389 21 7 1.5783 -2.1129 -1.2310 22 6 1.4468 -2.8056 -2.4050 23 1 1.6836 -2.3271 -3.3437 24 6 1.0080 -4.1225 -2.3885 25 7 0.7189 -4.7055 -1.2444 26 14 0.8280 -5.0671 -3.9899 27 1 2.1439 -5.1359 -4.6747 28 1 0.3478 -6.4425 -3.7021 29 1 -0.1502 -4.3740 -4.8662 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.6084 -1.7284 1.2983 34 1 1.7630 -0.1664 2.1431 35 1 6.3846 0.8328 4.0942 36 1 5.9077 -0.4469 5.2407 37 1 5.9080 2.5693 5.7177 38 1 6.9014 1.3457 6.5435 39 1 5.0993 1.8810 8.0428 40 1 4.7182 0.2899 7.3472 41 1 3.5540 2.9919 6.5246 42 1 2.6882 1.6184 7.2624 43 1 5.1896 -1.3246 0.0135 44 1 3.8375 -2.4818 -0.0870 45 1 3.9159 0.3389 -1.2541 46 1 3.9338 -1.1892 -2.1672 47 1 1.3653 -2.5427 -0.3879 48 1 0.4127 -5.6258 -1.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036115408.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:45 Heat of formation + Delta-G solvation = 19.388298 kcal Electronic energy + Delta-G solvation = -30049.383728 eV Core-core repulsion = 26106.915306 eV Total energy + Delta-G solvation = -3942.468421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.08431 -41.37526 -39.37500 -38.63078 -35.96620 -34.32783 -34.18564 -33.41671 -33.03288 -31.31082 -30.57348 -27.63124 -27.06990 -25.91379 -25.42802 -24.27794 -24.01050 -22.66073 -21.18864 -20.80891 -19.96068 -19.28542 -18.85144 -18.47871 -17.50313 -17.13560 -16.70364 -16.18104 -16.00123 -15.94775 -15.55599 -15.36224 -14.98377 -14.91892 -14.78879 -14.45466 -14.33915 -14.22607 -13.71277 -13.58683 -13.39603 -13.02394 -12.89688 -12.82501 -12.80663 -12.67456 -12.40885 -12.17191 -11.98339 -11.92586 -11.87990 -11.83102 -11.60895 -11.53328 -11.38141 -11.11122 -10.95945 -10.85036 -10.60955 -9.74637 -8.92497 -7.88283 -5.14314 -0.33558 0.98858 1.37823 1.50126 1.51181 1.56884 1.77503 2.01787 2.60251 2.83640 3.14605 3.45460 3.59481 3.71069 3.79816 3.86897 3.93840 3.96166 4.06652 4.10937 4.26403 4.29968 4.34638 4.38748 4.41863 4.48242 4.52994 4.65016 4.73298 4.84880 4.87400 4.92613 4.95082 4.98779 5.07163 5.09738 5.13980 5.15331 5.15630 5.25218 5.29530 5.29720 5.40778 5.48191 5.56871 5.61804 6.13390 6.33714 6.68644 7.02225 7.41369 8.17178 8.40811 9.34802 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.002954 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.646239 B = 9477.556431 C = 9872.131528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.106 3.894 5 N -0.586 5.586 6 C 0.601 3.399 7 O -0.543 6.543 8 C -0.094 4.094 9 O 0.086 5.914 10 N -0.356 5.356 11 C 0.024 3.976 12 C -0.120 4.120 13 C -0.053 4.053 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.042 4.042 17 C 0.128 3.872 18 C -0.140 4.140 19 C 0.172 3.828 20 H 0.052 0.948 21 N -0.724 5.724 22 C -0.227 4.227 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.964 3.036 27 H -0.282 1.282 28 H -0.302 1.302 29 H -0.281 1.281 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.374 0.626 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.190 16.573 16.413 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.017 4.017 5 N -0.316 5.316 6 C 0.387 3.613 7 O -0.422 6.422 8 C -0.157 4.157 9 O 0.023 5.977 10 N -0.065 5.065 11 C -0.137 4.137 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.080 4.080 17 C 0.006 3.994 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.070 0.930 21 N -0.366 5.366 22 C -0.359 4.359 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.208 1.208 28 H -0.229 1.229 29 H -0.207 1.207 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.208 0.792 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.564 16.808 16.327 24.623 hybrid contribution 0.124 -1.604 -1.042 1.917 sum 7.688 15.204 15.285 22.889 Atomic orbital electron populations 1.21603 0.93599 1.01676 1.02062 1.21714 0.96942 0.99373 0.93701 0.89120 1.22348 0.77748 1.01359 1.00218 1.48062 1.07756 1.58176 1.17606 1.16798 0.85593 0.78480 0.80433 1.90787 1.14021 1.59102 1.78308 1.23335 0.85773 1.07317 0.99251 1.85318 1.25920 1.56574 1.29862 1.73410 1.24813 1.13274 0.94969 1.24043 0.87690 1.00959 1.01017 1.21539 1.00379 0.98696 0.91879 1.20254 0.87395 1.01786 0.99589 1.21689 1.00326 0.98917 0.94378 1.21664 0.92249 1.02154 0.99265 1.20418 1.00164 1.01162 0.86245 1.21497 0.98045 0.96920 0.82892 1.22413 0.98893 1.00012 0.96736 1.20456 0.91663 0.85309 0.96207 0.92961 1.42579 1.79040 1.09297 1.05637 1.19530 1.34778 0.93928 0.87697 0.90703 1.25387 1.03600 0.98429 0.99126 1.69790 1.53823 1.12871 1.25494 0.85354 0.77761 0.77413 0.80066 1.20807 1.22863 1.20703 0.94036 0.91296 0.92093 0.92120 0.87305 0.89925 0.89528 0.91043 0.88617 0.87546 0.91659 0.87576 0.88393 0.89573 0.92550 0.90790 0.91394 0.79235 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.05 71.98 0.65 -3.33 16 2 C -0.10 -3.00 2.69 -10.57 -0.03 -3.03 16 3 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.11 3.40 5.35 86.51 0.46 3.86 16 5 N -0.59 -19.47 2.97 -821.87 -2.44 -21.90 16 6 C 0.60 19.76 7.69 86.69 0.67 20.42 16 7 O -0.54 -19.58 15.32 -3.98 -0.06 -19.65 16 8 C -0.09 -2.72 6.94 24.03 0.17 -2.56 16 9 O 0.09 2.46 7.87 59.52 0.47 2.93 16 10 N -0.36 -9.61 12.03 -50.86 -0.61 -10.23 16 11 C 0.02 0.54 7.21 43.77 0.32 0.86 16 12 C -0.12 -2.95 6.03 -19.91 -0.12 -3.07 16 13 C -0.05 -1.02 5.64 29.86 0.17 -0.85 16 14 C -0.12 -1.33 5.87 30.79 0.18 -1.15 16 15 C -0.12 -1.10 5.84 30.77 0.18 -0.93 16 16 C -0.04 -0.55 6.32 30.01 0.19 -0.36 16 17 C 0.13 4.52 6.16 86.36 0.53 5.05 16 18 C -0.14 -4.68 5.78 30.67 0.18 -4.50 16 19 C 0.17 6.28 2.53 45.02 0.11 6.40 16 20 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 21 N -0.72 -33.62 3.64 -322.81 -1.17 -34.79 16 22 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 23 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 25 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 26 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.25 6.63 -2.39 -0.02 2.24 16 34 H 0.11 3.22 3.86 -40.06 -0.15 3.07 16 35 H 0.08 1.79 7.68 -2.39 -0.02 1.77 16 36 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 38 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 41 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 2.94 7.04 -2.39 -0.02 2.93 16 44 H 0.06 2.34 7.74 -2.39 -0.02 2.33 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.37 18.87 5.92 -92.71 -0.55 18.32 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.05 372.53 3.74 -61.31 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.28 Total: 30.19 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.96 Total: 2.14 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -3.94 Total: -124.50 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.41 Total: -16.72 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -65.05 3.74 -61.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115408.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.699 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds