Wall clock time and date at job start Tue Mar 31 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99774 * 2 1 4 4 C 1.39137 * 120.47626 * 359.97438 * 3 2 1 5 5 C 1.38540 * 118.37387 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.22328 * 359.97438 * 5 4 3 7 7 N 1.31850 * 120.88505 * 359.74583 * 6 5 4 8 8 C 1.31841 * 121.78072 * 0.52672 * 7 6 5 9 9 C 1.50702 * 119.65799 * 179.75593 * 8 7 6 10 10 C 1.50702 * 109.46553 * 269.72223 * 9 8 7 11 11 O 1.21280 * 120.00608 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99526 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63188 * 359.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 17 17 N 1.46499 * 109.45427 * 181.24460 * 15 14 13 18 18 C 1.36928 * 120.00250 * 84.79108 * 17 15 14 19 19 H 1.08000 * 120.00193 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00515 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99431 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00596 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46788 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47413 * 119.99496 * 22 20 18 25 25 H 1.48498 * 109.46785 * 239.99788 * 22 20 18 26 26 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 27 27 H 1.09001 * 109.49731 * 58.65147 * 26 15 14 28 28 C 1.53005 * 109.49929 * 178.74923 * 26 15 14 29 29 C 1.46928 * 120.62829 * 179.97438 * 12 10 9 30 30 H 1.08998 * 109.47342 * 299.99449 * 1 2 3 31 31 H 1.08998 * 109.47474 * 59.99706 * 1 2 3 32 32 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.80847 * 0.04398 * 4 3 2 34 34 H 1.08001 * 120.38306 * 179.97438 * 5 4 3 35 35 H 1.07994 * 119.55761 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47177 * 149.72560 * 9 8 7 37 37 H 1.08994 * 109.47265 * 29.72016 * 9 8 7 38 38 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 39 39 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 40 40 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 41 41 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 42 42 H 0.97007 * 119.99658 * 264.78640 * 17 15 14 43 43 H 0.97006 * 119.99397 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.47522 * 179.84157 * 28 26 15 45 45 H 1.09006 * 109.47027 * 299.84067 * 28 26 15 46 46 H 1.08998 * 109.46892 * 59.83549 * 28 26 15 47 47 H 1.08998 * 109.58787 * 246.20220 * 29 12 10 48 48 H 1.08999 * 109.58470 * 6.62573 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2978 2.3841 -0.0005 5 6 1.9716 3.5946 -0.0011 6 6 3.3541 3.5976 -0.0005 7 7 4.0333 2.4675 0.0056 8 6 3.4305 1.2950 0.0010 9 6 4.2542 0.0330 0.0027 10 6 4.5294 -0.3890 -1.4176 11 8 4.0986 0.2697 -2.3403 12 7 5.2533 -1.4993 -1.6624 13 6 5.7813 -2.3079 -0.5552 14 6 7.2903 -2.4884 -0.7485 15 6 7.5561 -3.0711 -2.1387 16 1 7.0412 -4.0271 -2.2341 17 7 8.9962 -3.2729 -2.3161 18 6 9.5878 -4.4209 -1.8611 19 1 8.9929 -5.1775 -1.3712 20 6 10.9525 -4.6120 -2.0286 21 7 11.6777 -3.6897 -2.6253 22 14 11.7597 -6.1778 -1.4073 23 1 10.7336 -7.0476 -0.7781 24 1 12.3879 -6.8961 -2.5452 25 1 12.7994 -5.8342 -0.4042 26 6 7.0409 -2.1057 -3.2087 27 1 7.5375 -1.1417 -3.0983 28 6 7.3363 -2.6771 -4.5970 29 6 5.5294 -1.9238 -3.0417 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2183 2.3517 -0.0002 34 1 1.4232 4.5250 -0.0019 35 1 3.8848 4.5382 -0.0005 36 1 3.7073 -0.7571 0.5170 37 1 5.1978 0.2157 0.5167 38 1 5.5922 -1.8002 0.3906 39 1 5.2944 -3.2830 -0.5503 40 1 7.7866 -1.5220 -0.6603 41 1 7.6760 -3.1668 0.0126 42 1 9.5307 -2.5932 -2.7559 43 1 12.6313 -3.8234 -2.7427 44 1 6.9668 -1.9906 -5.3586 45 1 8.4122 -2.8061 -4.7154 46 1 6.8406 -3.6417 -4.7058 47 1 5.0236 -2.8685 -3.2414 48 1 5.1741 -1.1627 -3.7363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036152686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:52 Heat of formation + Delta-G solvation = -25.710922 kcal Electronic energy + Delta-G solvation = -29020.275754 eV Core-core repulsion = 25075.851684 eV Total energy + Delta-G solvation = -3944.424070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07309 -39.83836 -38.37688 -37.54108 -34.54441 -33.46735 -32.70683 -31.63487 -31.39098 -29.34274 -28.68341 -27.74560 -26.08599 -24.86254 -23.12561 -22.99120 -22.42509 -21.58592 -19.84547 -18.88712 -18.31534 -17.39676 -17.16834 -16.98683 -16.46523 -16.07015 -15.48267 -15.13865 -14.90334 -14.63371 -14.17516 -14.12243 -13.86056 -13.71886 -13.55183 -13.33151 -13.22767 -12.90160 -12.59339 -12.43335 -12.18624 -11.92915 -11.76612 -11.72421 -11.60642 -11.51653 -11.11894 -10.92694 -10.77667 -10.58203 -10.35617 -10.14589 -10.03961 -9.76327 -9.72373 -9.59058 -9.56529 -8.88585 -8.55512 -8.37903 -6.93888 -5.75718 -3.04117 0.87548 1.05540 2.80689 2.88258 3.12249 3.43234 3.48767 3.51161 3.62620 4.08536 4.35063 4.43992 4.59146 4.68171 4.71698 4.77907 4.84205 5.00299 5.11215 5.12055 5.18526 5.27884 5.32960 5.36665 5.43454 5.54719 5.59220 5.69646 5.73665 5.75358 5.83576 5.86190 6.03063 6.14020 6.18318 6.21275 6.35525 6.44477 6.48322 6.59220 6.70567 6.85860 6.90718 6.97278 7.10561 7.60527 7.70792 7.81504 8.34920 8.42612 9.53993 10.12179 10.47029 11.46901 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.002428 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.790140 B =11528.642450 C =11583.583816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.091 3.909 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.064 3.936 7 N -0.437 5.437 8 C 0.131 3.869 9 C -0.086 4.086 10 C 0.527 3.473 11 O -0.545 6.545 12 N -0.606 5.606 13 C 0.106 3.894 14 C -0.153 4.153 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.110 4.110 27 H 0.069 0.931 28 C -0.135 4.135 29 C 0.122 3.878 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.251 10.675 6.851 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.043 3.957 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.093 4.093 7 N -0.146 5.146 8 C -0.010 4.010 9 C -0.127 4.127 10 C 0.314 3.686 11 O -0.423 6.423 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.194 4.194 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.130 4.130 27 H 0.088 0.912 28 C -0.193 4.193 29 C -0.001 4.001 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.444 10.664 6.431 26.546 hybrid contribution -0.426 -0.453 0.297 0.689 sum -23.870 10.211 6.727 26.819 Atomic orbital electron populations 1.23105 0.78226 1.04346 1.01253 1.86111 1.21461 1.25935 1.88282 1.19829 0.93047 0.85179 0.97601 1.21637 1.00628 0.92140 1.04824 1.21963 0.95767 0.98165 0.99701 1.22614 0.91419 0.96336 0.98923 1.67474 1.39999 0.97508 1.09644 1.19986 0.87711 0.93451 0.99836 1.20486 1.01635 0.94289 0.96258 1.20187 0.77832 0.79956 0.90597 1.90667 1.51941 1.53445 1.46222 1.48109 1.52341 1.25561 1.07919 1.21879 0.96054 0.95106 0.88655 1.22695 0.92494 1.02252 1.01934 1.20190 0.86943 0.95069 0.90391 0.93490 1.42424 1.01893 1.21541 1.70249 1.19257 0.91131 0.95666 1.30626 0.91194 1.24734 0.96481 0.98197 1.01594 1.69678 1.06049 1.34085 1.48226 0.86156 0.79357 0.82929 0.77973 1.20607 1.21963 1.21971 1.21734 0.94115 1.00270 0.96892 0.91240 1.21655 1.03438 0.99661 0.94582 1.21668 0.95940 1.00118 0.82354 0.92643 0.92555 0.87873 0.84391 0.84556 0.82413 0.87030 0.86848 0.90467 0.91421 0.92085 0.90535 0.78220 0.93602 0.93883 0.90780 0.93096 0.91724 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.83 101.05 0.99 1.16 16 2 O -0.31 -3.28 9.55 -19.46 -0.19 -3.46 16 3 C 0.09 1.08 6.67 -39.07 -0.26 0.81 16 4 C -0.17 -1.55 9.14 -39.14 -0.36 -1.90 16 5 C -0.14 -1.19 10.11 -39.47 -0.40 -1.59 16 6 C 0.06 0.68 11.18 -17.54 -0.20 0.49 16 7 N -0.44 -6.04 10.27 -9.35 -0.10 -6.13 16 8 C 0.13 1.76 5.29 -82.41 -0.44 1.33 16 9 C -0.09 -1.09 4.12 -29.03 -0.12 -1.21 16 10 C 0.53 8.25 7.69 -10.98 -0.08 8.16 16 11 O -0.55 -10.39 15.45 5.56 0.09 -10.30 16 12 N -0.61 -8.97 2.97 -172.79 -0.51 -9.49 16 13 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 14 C -0.15 -2.56 5.67 -26.59 -0.15 -2.71 16 15 C 0.18 3.51 2.19 -67.87 -0.15 3.37 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 N -0.72 -17.40 4.41 -53.37 -0.24 -17.64 16 18 C -0.24 -6.32 9.93 -15.06 -0.15 -6.46 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 22 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.11 -1.88 2.46 -90.52 -0.22 -2.10 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 C -0.14 -2.28 9.02 37.16 0.34 -1.94 16 29 C 0.12 1.87 5.71 -3.73 -0.02 1.85 16 30 H 0.05 0.25 7.70 -51.93 -0.40 -0.14 16 31 H 0.06 0.32 7.70 -51.93 -0.40 -0.08 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 0.87 6.45 -52.49 -0.34 0.53 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.11 1.17 7.32 -51.93 -0.38 0.79 16 37 H 0.11 1.33 7.69 -51.93 -0.40 0.93 16 38 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.38 10.06 7.50 -40.82 -0.31 9.75 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.45 7.36 -51.93 -0.38 1.06 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.41 7.01 -51.93 -0.36 1.04 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -34.28 387.56 -8.21 -42.49 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.47 Total: 8.60 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.34 Total: 0.13 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.12 Total: -60.38 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.10 Total: -13.76 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.28 -8.21 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036152686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds