Wall clock time and date at job start Tue Mar 31 2020 17:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.52373 * 2 1 4 4 C 1.53624 * 109.43615 * 120.21029 * 2 1 3 5 5 N 1.46919 * 108.54528 * 174.72224 * 4 2 1 6 6 C 1.34784 * 120.62757 * 126.37106 * 5 4 2 7 7 O 1.21281 * 120.00093 * 359.71898 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.72161 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.38822 * 120.35757 * 269.72238 * 10 9 8 12 12 C 1.38381 * 118.48585 * 179.73187 * 11 10 9 13 13 C 1.38916 * 119.10810 * 0.54205 * 12 11 10 14 14 O 1.35679 * 119.68568 * 179.74337 * 13 12 11 15 15 N 1.32254 * 120.63247 * 359.72065 * 13 12 11 16 16 C 1.31964 * 121.64527 * 0.02562 * 15 13 12 17 17 C 1.46929 * 118.74306 * 306.09318 * 5 4 2 18 18 C 1.53193 * 108.76932 * 53.86103 * 17 5 4 19 19 C 1.53037 * 109.31396 * 305.36370 * 18 17 5 20 20 H 1.09007 * 109.45856 * 181.37305 * 19 18 17 21 21 N 1.46498 * 109.46476 * 301.34576 * 19 18 17 22 22 C 1.36937 * 120.00145 * 275.00280 * 21 19 18 23 23 H 1.07998 * 119.99697 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99710 * 179.97438 * 22 21 19 25 25 N 1.31613 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99736 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46996 * 90.00282 * 26 24 22 28 28 H 1.48494 * 109.47324 * 210.00032 * 26 24 22 29 29 H 1.48497 * 109.47010 * 330.00508 * 26 24 22 30 30 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47288 * 300.07542 * 1 2 3 32 32 H 1.09002 * 109.47186 * 60.07589 * 1 2 3 33 33 H 1.09000 * 109.73549 * 54.98425 * 4 2 1 34 34 H 1.09005 * 109.66406 * 294.42168 * 4 2 1 35 35 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 36 36 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 37 37 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 38 38 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 39 39 H 1.08003 * 120.76006 * 359.97438 * 11 10 9 40 40 H 1.07994 * 120.44530 * 180.24185 * 12 11 10 41 41 H 0.96700 * 113.99972 * 269.98347 * 14 13 12 42 42 H 1.08005 * 119.57705 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.58746 * 173.64648 * 17 5 4 44 44 H 1.09000 * 109.58568 * 293.93419 * 17 5 4 45 45 H 1.09002 * 109.50078 * 65.32032 * 18 17 5 46 46 H 1.08999 * 109.49592 * 185.41170 * 18 17 5 47 47 H 0.97001 * 119.99756 * 94.99885 * 21 19 18 48 48 H 0.97009 * 120.00033 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7289 1.2519 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3865 2.1782 7 8 3.7731 0.1048 3.1639 8 6 5.7805 -0.5020 2.0814 9 6 6.4190 0.0704 3.3485 10 6 7.9185 -0.0457 3.2519 11 6 8.5665 -1.1782 3.7259 12 6 9.9440 -1.2465 3.6126 13 6 10.6287 -0.1809 3.0421 14 8 11.9799 -0.2332 2.9299 15 7 9.9762 0.8839 2.6069 16 6 8.6628 0.9757 2.6967 17 6 4.1053 -1.4267 -0.0309 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6581 -0.2241 -2.1388 21 7 1.5782 -2.1130 -1.2310 22 6 1.4467 -2.8056 -2.4049 23 1 1.6836 -2.3270 -3.3436 24 6 1.0089 -4.1228 -2.3882 25 7 0.7198 -4.7058 -1.2442 26 14 0.8288 -5.0674 -3.9897 27 1 2.1060 -5.7568 -4.3041 28 1 -0.2554 -6.0728 -3.8522 29 1 0.4928 -4.1237 -5.0859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3634 0.5127 -0.8907 33 1 1.6084 -1.7283 1.2984 34 1 1.7630 -0.1664 2.1432 35 1 6.1327 0.0558 1.2137 36 1 6.0581 -1.5508 1.9761 37 1 6.0670 -0.4872 4.2164 38 1 6.1414 1.1192 3.4533 39 1 8.0080 -1.9893 4.1694 40 1 10.4799 -2.1144 3.9673 41 1 12.4521 0.1262 3.6934 42 1 8.1640 1.8611 2.3308 43 1 5.1895 -1.3246 0.0136 44 1 3.8396 -2.4824 -0.0856 45 1 3.9158 0.3390 -1.2542 46 1 3.9333 -1.1895 -2.1672 47 1 1.3652 -2.5427 -0.3878 48 1 0.4135 -5.6262 -1.2327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036153868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:42 Heat of formation + Delta-G solvation = -37.804330 kcal Electronic energy + Delta-G solvation = -28593.660246 eV Core-core repulsion = 24648.711766 eV Total energy + Delta-G solvation = -3944.948480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83146 -40.03466 -37.93538 -37.46105 -34.36353 -34.27749 -32.87681 -32.36148 -31.41373 -29.71584 -29.18710 -26.57254 -25.30740 -24.17715 -24.01532 -23.47367 -21.88920 -21.65336 -19.45229 -19.15320 -18.16753 -17.41680 -17.25827 -17.00338 -16.29993 -15.72020 -15.53278 -15.26506 -14.70585 -14.58871 -14.23729 -13.98056 -13.81799 -13.65687 -13.54104 -13.32339 -13.24664 -12.73289 -12.55832 -12.33701 -12.22098 -12.13174 -11.87491 -11.53489 -11.35869 -11.23337 -11.20124 -10.93215 -10.81527 -10.51680 -10.48461 -10.21352 -10.18350 -9.86660 -9.74394 -9.59629 -9.56144 -9.04587 -8.96004 -8.24075 -7.01017 -5.82373 -3.10793 0.64066 0.89601 2.80421 3.12747 3.25387 3.39046 3.45297 3.46468 3.50717 4.30673 4.39928 4.54588 4.59611 4.64391 4.76853 4.92575 4.95858 5.10778 5.20906 5.28923 5.33192 5.35378 5.42213 5.52595 5.57355 5.61661 5.65694 5.71133 5.79601 5.90214 5.91457 6.01998 6.04996 6.07034 6.20162 6.23039 6.29706 6.39021 6.48268 6.61198 6.66307 6.74120 6.90891 6.98666 7.12993 7.59327 7.65645 7.70453 8.36232 8.36574 9.47946 10.04578 10.39634 11.40014 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.002501 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.388502 B =11192.667488 C =12309.682534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.512 3.488 7 O -0.556 6.556 8 C -0.135 4.135 9 C -0.059 4.059 10 C -0.139 4.139 11 C -0.056 4.056 12 C -0.182 4.182 13 C 0.300 3.700 14 O -0.484 6.484 15 N -0.502 5.502 16 C 0.127 3.873 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.399 0.601 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.182 9.928 10.551 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.300 3.700 7 O -0.435 6.435 8 C -0.175 4.175 9 C -0.097 4.097 10 C -0.141 4.141 11 C -0.082 4.082 12 C -0.203 4.203 13 C 0.121 3.879 14 O -0.291 6.291 15 N -0.220 5.220 16 C -0.030 4.030 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.256 0.744 42 H 0.178 0.822 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.305 10.498 9.978 21.071 hybrid contribution -0.331 -1.384 -0.082 1.426 sum 14.974 9.113 9.897 20.130 Atomic orbital electron populations 1.21669 0.94292 1.03175 1.00416 1.21773 0.96462 0.98769 0.95751 0.91652 1.21734 0.78660 1.01470 0.98521 1.48156 1.07190 1.59669 1.18218 1.20506 0.89156 0.77733 0.82574 1.90660 1.75690 1.45857 1.31324 1.21674 0.92407 1.03687 0.99703 1.20262 0.88004 1.03480 0.97983 1.20993 0.97596 0.95279 1.00243 1.21503 0.93597 0.97265 0.95855 1.22119 0.95348 1.00725 1.02119 1.19206 0.84753 0.89829 0.94065 1.84796 1.13535 1.83785 1.46954 1.67180 1.10871 1.26259 1.17688 1.22482 0.87688 0.98143 0.94681 1.21746 0.96371 0.99045 0.83791 1.22521 1.00512 0.98617 0.97453 1.20220 0.90776 0.87374 0.94883 0.93146 1.42477 1.78985 1.07711 1.06921 1.19217 1.37207 0.93856 0.86575 0.91260 1.24702 1.02270 0.97203 0.96604 1.69646 1.51723 1.13043 1.23675 0.86239 0.77288 0.79829 0.83103 1.21827 1.21878 1.20849 0.91050 0.93776 0.92840 0.90701 0.89820 0.88784 0.88809 0.89762 0.89647 0.84094 0.84172 0.74398 0.82180 0.91212 0.89702 0.93293 0.90758 0.78103 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.05 37.15 0.34 -1.84 16 2 C -0.11 -1.72 2.69 -90.28 -0.24 -1.96 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.94 5.44 -3.49 -0.02 1.92 16 5 N -0.60 -9.15 2.97 -172.50 -0.51 -9.66 16 6 C 0.51 7.38 7.70 -10.98 -0.08 7.30 16 7 O -0.56 -9.58 15.39 5.56 0.09 -9.49 16 8 C -0.13 -1.40 4.03 -27.89 -0.11 -1.51 16 9 C -0.06 -0.55 4.66 -27.88 -0.13 -0.68 16 10 C -0.14 -1.22 5.15 -104.47 -0.54 -1.76 16 11 C -0.06 -0.46 9.85 -39.31 -0.39 -0.84 16 12 C -0.18 -1.50 10.04 -39.28 -0.39 -1.90 16 13 C 0.30 3.00 7.74 -17.12 -0.13 2.87 16 14 O -0.48 -4.19 13.56 -18.74 -0.25 -4.45 16 15 N -0.50 -5.63 10.39 -13.33 -0.14 -5.77 16 16 C 0.13 1.20 10.85 -17.57 -0.19 1.01 16 17 C 0.11 1.69 6.08 -3.71 -0.02 1.67 16 18 C -0.15 -2.37 5.78 -26.61 -0.15 -2.52 16 19 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -16.14 3.64 -53.38 -0.19 -16.33 16 22 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 26 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.37 6.63 -51.93 -0.34 1.03 16 34 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 36 H 0.09 0.91 7.94 -51.92 -0.41 0.49 16 37 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.40 1.37 9.06 45.56 0.41 1.78 16 42 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.07 0.84 5.93 -51.93 -0.31 0.54 16 44 H 0.08 1.52 7.74 -51.93 -0.40 1.12 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.38 9.27 5.92 -40.82 -0.24 9.02 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -32.26 387.57 -8.59 -40.86 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.63 Total: 10.33 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.49 Total: -1.84 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.12 Total: -57.78 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.17 Total: -13.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.26 -8.59 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.054 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds