Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.52373 * 2 1 4 4 C 1.53624 * 109.43615 * 120.21029 * 2 1 3 5 5 N 1.46919 * 108.54528 * 174.72224 * 4 2 1 6 6 C 1.34784 * 120.62757 * 126.37106 * 5 4 2 7 7 O 1.21281 * 120.00093 * 359.71898 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.72161 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.38822 * 120.35757 * 269.72238 * 10 9 8 12 12 C 1.38381 * 118.48585 * 179.73187 * 11 10 9 13 13 C 1.38916 * 119.10810 * 0.54205 * 12 11 10 14 14 O 1.35679 * 119.68568 * 179.74337 * 13 12 11 15 15 N 1.32254 * 120.63247 * 359.72065 * 13 12 11 16 16 C 1.31964 * 121.64527 * 0.02562 * 15 13 12 17 17 C 1.46929 * 118.74306 * 306.09318 * 5 4 2 18 18 C 1.53193 * 108.76932 * 53.86103 * 17 5 4 19 19 C 1.53037 * 109.31396 * 305.36370 * 18 17 5 20 20 H 1.09007 * 109.45856 * 181.37305 * 19 18 17 21 21 N 1.46498 * 109.46476 * 301.34576 * 19 18 17 22 22 C 1.36937 * 120.00145 * 275.00280 * 21 19 18 23 23 H 1.07998 * 119.99697 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99710 * 179.97438 * 22 21 19 25 25 N 1.31613 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99736 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46996 * 90.00282 * 26 24 22 28 28 H 1.48494 * 109.47324 * 210.00032 * 26 24 22 29 29 H 1.48497 * 109.47010 * 330.00508 * 26 24 22 30 30 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47288 * 300.07542 * 1 2 3 32 32 H 1.09002 * 109.47186 * 60.07589 * 1 2 3 33 33 H 1.09000 * 109.73549 * 54.98425 * 4 2 1 34 34 H 1.09005 * 109.66406 * 294.42168 * 4 2 1 35 35 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 36 36 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 37 37 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 38 38 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 39 39 H 1.08003 * 120.76006 * 359.97438 * 11 10 9 40 40 H 1.07994 * 120.44530 * 180.24185 * 12 11 10 41 41 H 0.96700 * 113.99972 * 269.98347 * 14 13 12 42 42 H 1.08005 * 119.57705 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.58746 * 173.64648 * 17 5 4 44 44 H 1.09000 * 109.58568 * 293.93419 * 17 5 4 45 45 H 1.09002 * 109.50078 * 65.32032 * 18 17 5 46 46 H 1.08999 * 109.49592 * 185.41170 * 18 17 5 47 47 H 0.97001 * 119.99756 * 94.99885 * 21 19 18 48 48 H 0.97009 * 120.00033 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7289 1.2519 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3865 2.1782 7 8 3.7731 0.1048 3.1639 8 6 5.7805 -0.5020 2.0814 9 6 6.4190 0.0704 3.3485 10 6 7.9185 -0.0457 3.2519 11 6 8.5665 -1.1782 3.7259 12 6 9.9440 -1.2465 3.6126 13 6 10.6287 -0.1809 3.0421 14 8 11.9799 -0.2332 2.9299 15 7 9.9762 0.8839 2.6069 16 6 8.6628 0.9757 2.6967 17 6 4.1053 -1.4267 -0.0309 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6581 -0.2241 -2.1388 21 7 1.5782 -2.1130 -1.2310 22 6 1.4467 -2.8056 -2.4049 23 1 1.6836 -2.3270 -3.3436 24 6 1.0089 -4.1228 -2.3882 25 7 0.7198 -4.7058 -1.2442 26 14 0.8288 -5.0674 -3.9897 27 1 2.1060 -5.7568 -4.3041 28 1 -0.2554 -6.0728 -3.8522 29 1 0.4928 -4.1237 -5.0859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5150 0.8893 32 1 -0.3634 0.5127 -0.8907 33 1 1.6084 -1.7283 1.2984 34 1 1.7630 -0.1664 2.1432 35 1 6.1327 0.0558 1.2137 36 1 6.0581 -1.5508 1.9761 37 1 6.0670 -0.4872 4.2164 38 1 6.1414 1.1192 3.4533 39 1 8.0080 -1.9893 4.1694 40 1 10.4799 -2.1144 3.9673 41 1 12.4521 0.1262 3.6934 42 1 8.1640 1.8611 2.3308 43 1 5.1895 -1.3246 0.0136 44 1 3.8396 -2.4824 -0.0856 45 1 3.9158 0.3390 -1.2542 46 1 3.9333 -1.1895 -2.1672 47 1 1.3652 -2.5427 -0.3878 48 1 0.4135 -5.6262 -1.2327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036153868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = -60.585302 kcal Electronic energy + Delta-G solvation = -28594.648103 eV Core-core repulsion = 24648.711766 eV Total energy + Delta-G solvation = -3945.936337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56640 -41.17837 -39.17489 -38.19141 -35.82828 -35.17110 -34.39014 -33.10318 -32.89003 -30.90602 -30.49198 -27.74631 -26.66039 -25.43302 -24.96982 -24.66943 -23.02640 -22.60815 -20.67470 -19.77216 -19.53788 -19.20924 -18.17596 -17.93247 -16.97323 -16.88683 -16.73200 -16.34303 -16.10827 -15.75007 -15.54051 -15.23158 -14.98530 -14.71720 -14.60995 -14.30102 -14.16868 -14.10894 -13.82465 -13.57074 -13.17560 -12.97765 -12.91747 -12.84597 -12.74846 -12.63543 -12.53655 -12.35624 -12.10347 -12.00490 -11.94147 -11.85409 -11.55998 -11.13604 -10.93012 -10.82715 -10.70491 -10.38709 -9.72116 -9.54235 -8.90647 -7.88045 -5.13748 -0.00450 0.26397 1.49770 1.50650 1.58071 1.67340 2.07784 2.56708 2.60375 2.84679 3.44940 3.47448 3.75670 3.84640 3.89988 3.94356 3.98225 4.04040 4.10340 4.13434 4.19190 4.28626 4.34757 4.43194 4.47688 4.57838 4.67412 4.70509 4.74792 4.76113 4.88107 4.94291 5.00162 5.04230 5.06530 5.16417 5.18465 5.26247 5.31875 5.34375 5.35800 5.50124 5.61424 5.61962 5.68506 6.34198 6.53003 6.64564 6.95721 7.20654 7.41741 8.18668 8.41899 9.35255 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.002501 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.388502 B =11192.667488 C =12309.682534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.124 3.876 5 N -0.604 5.604 6 C 0.511 3.489 7 O -0.585 6.585 8 C -0.128 4.128 9 C -0.049 4.049 10 C -0.139 4.139 11 C -0.057 4.057 12 C -0.181 4.181 13 C 0.287 3.713 14 O -0.497 6.497 15 N -0.533 5.533 16 C 0.119 3.881 17 C 0.120 3.880 18 C -0.143 4.143 19 C 0.170 3.830 20 H 0.045 0.955 21 N -0.724 5.724 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.962 3.038 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.273 1.273 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.418 0.582 42 H 0.174 0.826 43 H 0.106 0.894 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.373 0.627 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.817 11.110 10.345 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.000 4.000 5 N -0.335 5.335 6 C 0.301 3.699 7 O -0.466 6.466 8 C -0.167 4.167 9 C -0.088 4.088 10 C -0.141 4.141 11 C -0.082 4.082 12 C -0.202 4.202 13 C 0.109 3.891 14 O -0.307 6.307 15 N -0.252 5.252 16 C -0.037 4.037 17 C -0.002 4.002 18 C -0.183 4.183 19 C 0.062 3.938 20 H 0.063 0.937 21 N -0.366 5.366 22 C -0.357 4.357 23 H 0.092 0.908 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.218 1.218 28 H -0.230 1.230 29 H -0.198 1.198 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.279 0.721 42 H 0.191 0.809 43 H 0.124 0.876 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.207 0.793 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.981 11.734 9.762 22.833 hybrid contribution -0.800 -1.654 0.035 1.838 sum 16.180 10.080 9.797 21.434 Atomic orbital electron populations 1.21609 0.94348 1.01397 1.01692 1.21691 0.96388 0.99299 0.94324 0.89533 1.21537 0.79837 0.99897 0.98686 1.48205 1.06650 1.59899 1.18734 1.21198 0.90667 0.76513 0.81501 1.90649 1.76613 1.47072 1.32290 1.21707 0.89050 1.04881 1.01092 1.20136 0.88197 1.03214 0.97213 1.20901 0.97048 0.95525 1.00599 1.21784 0.93740 0.97486 0.95218 1.22319 0.95502 1.00835 1.01575 1.19480 0.85230 0.90148 0.94271 1.84740 1.13327 1.84085 1.48506 1.67180 1.11732 1.27310 1.18966 1.22741 0.87386 0.98870 0.94703 1.21663 0.98375 0.96854 0.83349 1.22393 0.98146 1.00354 0.97445 1.20464 0.92533 0.85110 0.95738 0.93689 1.42588 1.79127 1.09301 1.05537 1.19559 1.34586 0.93815 0.87718 0.90763 1.25367 1.03697 0.98467 0.99035 1.69797 1.53966 1.12834 1.25446 0.85299 0.76633 0.78448 0.80332 1.21774 1.23009 1.19771 0.94269 0.91730 0.92333 0.93483 0.89893 0.86844 0.87595 0.90260 0.89813 0.82234 0.82179 0.72131 0.80852 0.87564 0.93144 0.90412 0.91638 0.79307 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.05 71.98 0.65 -3.46 16 2 C -0.10 -2.98 2.69 -10.57 -0.03 -3.01 16 3 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.12 4.01 5.44 86.51 0.47 4.48 16 5 N -0.60 -17.50 2.97 -818.07 -2.43 -19.93 16 6 C 0.51 13.73 7.70 87.65 0.67 14.40 16 7 O -0.59 -19.39 15.39 -3.03 -0.05 -19.43 16 8 C -0.13 -2.28 4.03 29.85 0.12 -2.16 16 9 C -0.05 -0.80 4.66 29.85 0.14 -0.66 16 10 C -0.14 -2.11 5.15 -19.77 -0.10 -2.22 16 11 C -0.06 -0.78 9.85 22.44 0.22 -0.55 16 12 C -0.18 -2.59 10.04 22.47 0.23 -2.37 16 13 C 0.29 5.30 7.74 84.79 0.66 5.96 16 14 O -0.50 -7.94 13.56 -89.97 -1.22 -9.16 16 15 N -0.53 -11.25 10.39 -308.94 -3.21 -14.46 16 16 C 0.12 2.04 10.85 84.63 0.92 2.96 16 17 C 0.12 3.37 6.08 86.36 0.52 3.90 16 18 C -0.14 -4.19 5.78 30.67 0.18 -4.02 16 19 C 0.17 5.99 2.53 45.02 0.11 6.10 16 20 H 0.05 1.64 8.08 -2.38 -0.02 1.62 16 21 N -0.72 -32.85 3.64 -322.81 -1.18 -34.03 16 22 C -0.22 -11.55 9.93 84.03 0.83 -10.71 16 23 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 25 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 26 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 30 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 34 H 0.08 2.70 7.00 -2.38 -0.02 2.69 16 35 H 0.11 1.64 7.69 -2.39 -0.02 1.62 16 36 H 0.11 1.69 7.94 -2.38 -0.02 1.68 16 37 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 38 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.42 2.33 9.06 -74.06 -0.67 1.66 16 42 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.11 2.21 5.93 -2.39 -0.01 2.19 16 44 H 0.05 1.80 7.74 -2.39 -0.02 1.78 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.37 18.61 5.92 -92.71 -0.55 18.06 16 48 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -70.36 387.57 0.06 -70.30 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.24 Total: 31.63 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.06 Total: 5.09 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.53 Total: -125.24 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -1.27 Total: -28.60 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.36 0.06 -70.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.718 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds