Wall clock time and date at job start Tue Mar 31 2020 17:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35674 * 116.99389 * 2 1 4 4 C 1.38920 * 119.68069 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.11385 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.75981 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47285 * 89.99938 * 6 5 4 8 8 O 1.21282 * 120.00150 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63529 * 359.97438 * 9 7 6 11 11 C 1.53196 * 108.77653 * 126.36769 * 10 9 7 12 12 C 1.53039 * 109.31095 * 54.64295 * 11 10 9 13 13 H 1.09008 * 109.46242 * 58.63444 * 12 11 10 14 14 N 1.46496 * 109.46257 * 178.61500 * 12 11 10 15 15 C 1.36945 * 119.99718 * 274.99801 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53040 * 109.53726 * 298.63329 * 12 11 10 24 24 H 1.09008 * 109.49787 * 301.41446 * 23 12 11 25 25 C 1.53005 * 109.50042 * 181.31724 * 23 12 11 26 26 C 1.46930 * 120.63362 * 179.97438 * 9 7 6 27 27 C 1.38834 * 118.48341 * 0.27309 * 5 4 3 28 28 C 1.38041 * 119.28793 * 359.45933 * 27 5 4 29 29 N 1.31973 * 120.83590 * 0.55388 * 28 27 5 30 30 H 1.08998 * 109.47343 * 60.00459 * 1 2 3 31 31 H 1.09001 * 109.46681 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47396 * 299.99681 * 1 2 3 33 33 H 1.08007 * 120.44144 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.47155 * 329.99529 * 6 5 4 35 35 H 1.09004 * 109.47102 * 210.00290 * 6 5 4 36 36 H 1.09000 * 109.58074 * 6.58761 * 10 9 7 37 37 H 1.08997 * 109.70590 * 246.23292 * 10 9 7 38 38 H 1.08997 * 109.49638 * 294.68972 * 11 10 9 39 39 H 1.08999 * 109.52207 * 174.60511 * 11 10 9 40 40 H 0.96996 * 120.00499 * 94.99531 * 14 12 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.46613 * 60.00054 * 25 23 12 43 43 H 1.08999 * 109.46921 * 179.97438 * 25 23 12 44 44 H 1.08997 * 109.46827 * 299.99734 * 25 23 12 45 45 H 1.09002 * 109.58562 * 353.41282 * 26 9 7 46 46 H 1.09003 * 109.58981 * 113.69506 * 26 9 7 47 47 H 1.07994 * 120.35098 * 179.69848 * 27 5 4 48 48 H 1.07998 * 119.58371 * 180.27385 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 0.0005 5 6 4.0484 2.5132 0.0000 6 6 5.5511 2.6270 0.0000 7 6 6.0520 2.6643 -1.4208 8 8 5.2662 2.6048 -2.3427 9 7 7.3733 2.7638 -1.6670 10 6 8.3376 2.8374 -0.5609 11 6 9.3948 1.7457 -0.7549 12 6 10.0203 1.8881 -2.1443 13 1 10.4667 2.8778 -2.2419 14 7 11.0550 0.8662 -2.3209 15 6 12.3272 1.0948 -1.8686 16 1 12.5678 2.0285 -1.3822 17 6 13.3075 0.1263 -2.0354 18 7 13.0144 -1.0115 -2.6287 19 14 15.0432 0.4384 -1.4192 20 1 15.8936 -0.7421 -1.7162 21 1 15.6018 1.6350 -2.0982 22 1 15.0136 0.6700 0.0473 23 6 8.9395 1.7092 -3.2129 24 1 8.4752 0.7293 -3.1004 25 6 9.5715 1.8191 -4.6020 26 6 7.8771 2.8008 -3.0468 27 6 3.2503 3.6492 0.0047 28 6 1.8770 3.5097 -0.0015 29 7 1.3185 2.3140 -0.0010 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 4.0228 0.3695 0.0014 34 1 5.9806 1.7673 0.5143 35 1 5.8462 3.5422 0.5135 36 1 7.8203 2.6809 0.3857 37 1 8.8187 3.8154 -0.5571 38 1 8.9263 0.7656 -0.6655 39 1 10.1692 1.8495 0.0051 40 1 10.8390 0.0277 -2.7580 41 1 13.6996 -1.6881 -2.7455 42 1 10.3292 1.0443 -4.7186 43 1 8.8014 1.6911 -5.3627 44 1 10.0340 2.7996 -4.7141 45 1 7.0559 2.6202 -3.7405 46 1 8.3181 3.7769 -3.2488 47 1 3.6992 4.6314 0.0094 48 1 1.2516 4.3902 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036180445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:15 Heat of formation + Delta-G solvation = -27.652652 kcal Electronic energy + Delta-G solvation = -28534.003090 eV Core-core repulsion = 24589.494820 eV Total energy + Delta-G solvation = -3944.508270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95143 -40.06935 -38.24982 -37.57156 -34.66081 -34.04141 -32.83816 -31.50581 -30.94306 -29.51666 -29.00498 -27.37907 -26.13096 -24.92808 -23.65375 -22.93054 -22.20105 -21.66487 -19.96023 -19.04095 -17.97611 -17.32972 -17.20536 -17.04294 -16.20387 -16.15948 -15.73215 -15.39809 -14.97397 -14.58095 -14.40984 -14.18170 -13.82243 -13.77289 -13.43572 -13.34499 -13.21614 -13.02744 -12.55188 -12.41179 -12.29534 -12.11255 -11.79862 -11.73657 -11.60922 -11.41727 -11.19913 -10.95890 -10.84292 -10.66909 -10.43691 -10.25883 -10.11734 -9.87386 -9.78706 -9.65979 -9.57097 -8.93443 -8.68991 -8.52312 -7.00230 -5.80638 -3.09686 0.96777 1.05357 2.60234 2.85823 3.04798 3.40069 3.44934 3.46123 3.60872 4.09528 4.31104 4.53036 4.54869 4.69458 4.88858 4.92114 4.99913 5.04021 5.07743 5.16050 5.22395 5.23416 5.25747 5.31994 5.39122 5.49094 5.53843 5.56173 5.65457 5.68057 5.75553 5.93314 6.05106 6.07763 6.11435 6.20505 6.26379 6.34548 6.40576 6.49323 6.59476 6.77403 6.89256 7.01523 7.03862 7.44791 7.64580 7.65213 8.16571 8.37528 9.48836 10.06214 10.40890 11.41673 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002243 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.932519 B =12477.672928 C =12714.048424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.175 4.175 5 C 0.016 3.984 6 C -0.106 4.106 7 C 0.518 3.482 8 O -0.541 6.541 9 N -0.605 5.605 10 C 0.105 3.895 11 C -0.153 4.153 12 C 0.184 3.816 13 H 0.048 0.952 14 N -0.720 5.720 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.292 1.292 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.110 4.110 24 H 0.069 0.931 25 C -0.136 4.136 26 C 0.120 3.880 27 C -0.196 4.196 28 C 0.138 3.862 29 N -0.544 5.544 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.136 0.864 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.049 9.167 6.781 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.142 3.858 4 C -0.195 4.195 5 C 0.008 3.992 6 C -0.146 4.146 7 C 0.305 3.695 8 O -0.418 6.418 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.194 4.194 12 C 0.073 3.927 13 H 0.066 0.934 14 N -0.361 5.361 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.130 4.130 24 H 0.087 0.913 25 C -0.194 4.194 26 C -0.002 4.002 27 C -0.216 4.216 28 C -0.017 4.017 29 N -0.268 5.268 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.153 0.847 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.080 8.825 6.340 24.609 hybrid contribution 1.724 -0.032 0.314 1.752 sum -20.356 8.793 6.655 23.151 Atomic orbital electron populations 1.22838 0.77324 1.02866 1.02353 1.86249 1.22842 1.24595 1.87888 1.19729 0.89194 0.84663 0.92237 1.20884 0.92086 0.99029 1.07531 1.19480 0.94580 0.92355 0.92789 1.20757 0.91686 1.05942 0.96168 1.20242 0.82076 0.76523 0.90630 1.90717 1.54835 1.50090 1.46163 1.48159 1.05453 1.72093 1.08099 1.21907 0.90909 1.00447 0.88549 1.22700 0.97191 0.97412 1.02111 1.20190 0.88306 0.93837 0.90336 0.93418 1.42404 1.06040 1.17133 1.70493 1.19160 0.86320 1.00389 1.31195 0.91288 1.24736 0.98167 0.96481 1.01463 1.69649 1.33278 1.07003 1.48057 0.86297 0.84731 0.76866 0.78439 1.21750 1.21306 1.21324 1.21748 0.95743 0.98481 0.96991 0.91262 1.21658 1.00397 1.02826 0.94523 1.21719 0.97368 0.98983 0.82137 1.21812 0.94771 0.99205 1.05857 1.22299 0.92642 0.93573 0.93200 1.67277 1.41012 0.98869 1.19616 0.92340 0.88690 0.92396 0.84194 0.87108 0.87199 0.90464 0.91280 0.92136 0.90484 0.78203 0.93441 0.90734 0.93834 0.93053 0.89425 0.91576 0.84655 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.71 10.48 -18.72 -0.20 -3.91 16 3 C 0.32 4.06 7.49 -17.12 -0.13 3.93 16 4 C -0.17 -2.11 9.75 -39.28 -0.38 -2.49 16 5 C 0.02 0.18 4.41 -104.35 -0.46 -0.28 16 6 C -0.11 -1.01 4.22 -29.04 -0.12 -1.13 16 7 C 0.52 6.88 7.69 -10.99 -0.08 6.79 16 8 O -0.54 -9.19 15.45 5.56 0.09 -9.11 16 9 N -0.61 -7.85 2.97 -172.74 -0.51 -8.36 16 10 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 11 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 12 C 0.18 3.32 2.19 -67.89 -0.15 3.18 16 13 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16 14 N -0.72 -16.85 4.41 -53.39 -0.24 -17.08 16 15 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 16 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 19 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 C -0.11 -1.76 2.46 -90.48 -0.22 -1.98 16 24 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 25 C -0.14 -2.18 9.03 37.16 0.34 -1.85 16 26 C 0.12 1.69 5.72 -3.69 -0.02 1.67 16 27 C -0.20 -1.92 9.81 -39.43 -0.39 -2.31 16 28 C 0.14 1.37 11.18 -17.56 -0.20 1.17 16 29 N -0.54 -6.52 9.22 -13.33 -0.12 -6.64 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.11 0.90 7.65 -51.93 -0.40 0.51 16 35 H 0.11 0.75 7.90 -51.93 -0.41 0.34 16 36 H 0.08 0.67 5.93 -51.93 -0.31 0.37 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.38 9.77 7.51 -40.82 -0.31 9.47 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.41 7.36 -51.93 -0.38 1.02 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -32.87 391.29 -8.20 -41.07 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.63 Total: 8.14 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.19 Total: -0.10 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.15 Total: -58.69 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.11 Total: -13.01 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.87 -8.20 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036180445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.421 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds