Wall clock time and date at job start Tue Mar 31 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35674 * 116.99389 * 2 1 4 4 C 1.38920 * 119.68069 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.11385 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.75981 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47285 * 89.99938 * 6 5 4 8 8 O 1.21282 * 120.00150 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63529 * 359.97438 * 9 7 6 11 11 C 1.53196 * 108.77653 * 126.36769 * 10 9 7 12 12 C 1.53039 * 109.31095 * 54.64295 * 11 10 9 13 13 H 1.09008 * 109.46242 * 58.63444 * 12 11 10 14 14 N 1.46496 * 109.46257 * 178.61500 * 12 11 10 15 15 C 1.36945 * 119.99718 * 274.99801 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53040 * 109.53726 * 298.63329 * 12 11 10 24 24 H 1.09008 * 109.49787 * 301.41446 * 23 12 11 25 25 C 1.53005 * 109.50042 * 181.31724 * 23 12 11 26 26 C 1.46930 * 120.63362 * 179.97438 * 9 7 6 27 27 C 1.38834 * 118.48341 * 0.27309 * 5 4 3 28 28 C 1.38041 * 119.28793 * 359.45933 * 27 5 4 29 29 N 1.31973 * 120.83590 * 0.55388 * 28 27 5 30 30 H 1.08998 * 109.47343 * 60.00459 * 1 2 3 31 31 H 1.09001 * 109.46681 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47396 * 299.99681 * 1 2 3 33 33 H 1.08007 * 120.44144 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.47155 * 329.99529 * 6 5 4 35 35 H 1.09004 * 109.47102 * 210.00290 * 6 5 4 36 36 H 1.09000 * 109.58074 * 6.58761 * 10 9 7 37 37 H 1.08997 * 109.70590 * 246.23292 * 10 9 7 38 38 H 1.08997 * 109.49638 * 294.68972 * 11 10 9 39 39 H 1.08999 * 109.52207 * 174.60511 * 11 10 9 40 40 H 0.96996 * 120.00499 * 94.99531 * 14 12 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.46613 * 60.00054 * 25 23 12 43 43 H 1.08999 * 109.46921 * 179.97438 * 25 23 12 44 44 H 1.08997 * 109.46827 * 299.99734 * 25 23 12 45 45 H 1.09002 * 109.58562 * 353.41282 * 26 9 7 46 46 H 1.09003 * 109.58981 * 113.69506 * 26 9 7 47 47 H 1.07994 * 120.35098 * 179.69848 * 27 5 4 48 48 H 1.07998 * 119.58371 * 180.27385 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 0.0005 5 6 4.0484 2.5132 0.0000 6 6 5.5511 2.6270 0.0000 7 6 6.0520 2.6643 -1.4208 8 8 5.2662 2.6048 -2.3427 9 7 7.3733 2.7638 -1.6670 10 6 8.3376 2.8374 -0.5609 11 6 9.3948 1.7457 -0.7549 12 6 10.0203 1.8881 -2.1443 13 1 10.4667 2.8778 -2.2419 14 7 11.0550 0.8662 -2.3209 15 6 12.3272 1.0948 -1.8686 16 1 12.5678 2.0285 -1.3822 17 6 13.3075 0.1263 -2.0354 18 7 13.0144 -1.0115 -2.6287 19 14 15.0432 0.4384 -1.4192 20 1 15.8936 -0.7421 -1.7162 21 1 15.6018 1.6350 -2.0982 22 1 15.0136 0.6700 0.0473 23 6 8.9395 1.7092 -3.2129 24 1 8.4752 0.7293 -3.1004 25 6 9.5715 1.8191 -4.6020 26 6 7.8771 2.8008 -3.0468 27 6 3.2503 3.6492 0.0047 28 6 1.8770 3.5097 -0.0015 29 7 1.3185 2.3140 -0.0010 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 4.0228 0.3695 0.0014 34 1 5.9806 1.7673 0.5143 35 1 5.8462 3.5422 0.5135 36 1 7.8203 2.6809 0.3857 37 1 8.8187 3.8154 -0.5571 38 1 8.9263 0.7656 -0.6655 39 1 10.1692 1.8495 0.0051 40 1 10.8390 0.0277 -2.7580 41 1 13.6996 -1.6881 -2.7455 42 1 10.3292 1.0443 -4.7186 43 1 8.8014 1.6911 -5.3627 44 1 10.0340 2.7996 -4.7141 45 1 7.0559 2.6202 -3.7405 46 1 8.3181 3.7769 -3.2488 47 1 3.6992 4.6314 0.0094 48 1 1.2516 4.3902 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036180445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:14 Heat of formation + Delta-G solvation = -49.962351 kcal Electronic energy + Delta-G solvation = -28534.970511 eV Core-core repulsion = 24589.494820 eV Total energy + Delta-G solvation = -3945.475691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79614 -41.10082 -39.24402 -38.66113 -36.14811 -34.95399 -34.30455 -33.01042 -31.71459 -31.03865 -29.98372 -28.13238 -27.31836 -26.49321 -24.52197 -24.33341 -23.13976 -22.94991 -21.23444 -20.16032 -19.01739 -18.80733 -18.18810 -18.09363 -17.04474 -16.95429 -16.74062 -16.70890 -16.36898 -15.68323 -15.51752 -15.32305 -15.17857 -14.96320 -14.79679 -14.37925 -14.20223 -14.02957 -13.86951 -13.51739 -13.23611 -13.12156 -12.96960 -12.80732 -12.79019 -12.71120 -12.50021 -12.43206 -12.19064 -12.16290 -12.00191 -11.82649 -11.64084 -11.12900 -11.10716 -10.83804 -10.67488 -10.49193 -9.63644 -9.48058 -8.94267 -7.89275 -5.16785 0.17114 0.25196 1.49841 1.51851 1.57696 1.61006 2.00812 2.16737 2.59586 2.79558 3.34980 3.43920 3.55476 3.63338 3.81698 3.91601 3.99172 4.07029 4.13535 4.14952 4.19320 4.34468 4.41443 4.43271 4.43813 4.51343 4.54029 4.57527 4.69434 4.73594 4.78877 4.81651 4.83890 4.87169 4.93041 5.02257 5.04244 5.20958 5.32406 5.34849 5.42114 5.48608 5.53692 5.58856 5.67456 6.24953 6.31972 6.44156 6.85735 7.15704 7.38424 8.15486 8.37901 9.34156 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002243 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.932519 B =12477.672928 C =12714.048424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.328 6.328 3 C 0.298 3.702 4 C -0.196 4.196 5 C 0.007 3.993 6 C -0.099 4.099 7 C 0.517 3.483 8 O -0.583 6.583 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.145 4.145 12 C 0.178 3.822 13 H 0.049 0.951 14 N -0.733 5.733 15 C -0.228 4.228 16 H 0.079 0.921 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.968 3.032 20 H -0.303 1.303 21 H -0.279 1.279 22 H -0.277 1.277 23 C -0.100 4.100 24 H 0.049 0.951 25 C -0.131 4.131 26 C 0.128 3.872 27 C -0.195 4.195 28 C 0.130 3.870 29 N -0.558 5.558 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.369 0.631 41 H 0.248 0.752 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.164 0.836 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 11.972 8.474 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.235 6.235 3 C 0.120 3.880 4 C -0.216 4.216 5 C -0.001 4.001 6 C -0.138 4.138 7 C 0.306 3.694 8 O -0.463 6.463 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.186 4.186 12 C 0.069 3.931 13 H 0.067 0.933 14 N -0.372 5.372 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.271 4.271 18 N -0.624 5.624 19 Si 0.798 3.202 20 H -0.229 1.229 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.120 4.120 24 H 0.068 0.932 25 C -0.189 4.189 26 C 0.005 3.995 27 C -0.214 4.214 28 C -0.024 4.024 29 N -0.283 5.283 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.201 0.799 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.182 0.818 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.771 11.684 8.072 26.836 hybrid contribution 1.831 -0.846 -0.250 2.032 sum -20.940 10.838 7.822 24.842 Atomic orbital electron populations 1.23023 0.75885 1.04482 1.02208 1.86217 1.24430 1.24853 1.88030 1.19975 0.89703 0.85079 0.93223 1.21066 0.92173 0.99797 1.08593 1.19733 0.95579 0.92228 0.92557 1.20836 0.90641 1.08579 0.93762 1.20864 0.81558 0.75164 0.91789 1.90707 1.55807 1.51904 1.47874 1.48220 1.05869 1.71809 1.07872 1.21986 0.89812 0.99635 0.89536 1.22491 0.98070 0.98459 0.99573 1.20457 0.87787 0.92226 0.92604 0.93263 1.42613 1.06595 1.17643 1.70344 1.19569 0.87290 1.00099 1.29077 0.90268 1.25503 1.01922 0.96699 1.02982 1.69820 1.33929 1.08048 1.50561 0.85285 0.80375 0.76267 0.78289 1.22933 1.20555 1.20290 1.21610 0.95632 0.98477 0.96262 0.93241 1.21579 1.00024 1.01942 0.95323 1.21547 0.96181 0.98676 0.83138 1.22181 0.94696 1.00101 1.04464 1.22927 0.93557 0.93821 0.92130 1.67315 1.41465 0.99417 1.20094 0.92829 0.86254 0.92118 0.84468 0.85499 0.83353 0.86650 0.89132 0.93671 0.91275 0.79935 0.94362 0.94211 0.92038 0.92195 0.90349 0.89794 0.81815 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.83 16 2 O -0.33 -8.00 10.48 -89.91 -0.94 -8.94 16 3 C 0.30 7.54 7.49 84.79 0.63 8.17 16 4 C -0.20 -4.64 9.75 22.47 0.22 -4.42 16 5 C 0.01 0.14 4.41 -19.69 -0.09 0.05 16 6 C -0.10 -1.52 4.22 29.10 0.12 -1.39 16 7 C 0.52 12.34 7.69 87.66 0.67 13.02 16 8 O -0.58 -19.03 15.45 -3.04 -0.05 -19.08 16 9 N -0.61 -13.94 2.97 -818.83 -2.43 -16.38 16 10 C 0.11 2.13 6.34 86.36 0.55 2.68 16 11 C -0.15 -4.23 5.66 30.67 0.17 -4.05 16 12 C 0.18 6.28 2.19 45.02 0.10 6.38 16 13 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 14 N -0.73 -34.72 4.41 -322.82 -1.42 -36.14 16 15 C -0.23 -11.95 9.93 84.03 0.83 -11.11 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 17 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 18 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 19 Si 0.97 44.92 29.55 68.60 2.03 46.94 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.10 -3.15 2.46 -10.70 -0.03 -3.18 16 24 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 25 C -0.13 -4.20 9.03 71.98 0.65 -3.55 16 26 C 0.13 3.34 5.72 86.37 0.49 3.84 16 27 C -0.19 -3.23 9.81 22.37 0.22 -3.01 16 28 C 0.13 2.31 11.18 84.62 0.95 3.25 16 29 N -0.56 -12.92 9.22 -308.96 -2.85 -15.77 16 30 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.13 1.58 7.65 -2.39 -0.02 1.56 16 35 H 0.15 1.15 7.90 -2.38 -0.02 1.13 16 36 H 0.12 1.39 5.93 -2.39 -0.01 1.37 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.37 19.50 7.51 -92.71 -0.70 18.81 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 42 H 0.04 1.54 7.36 -2.39 -0.02 1.53 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.08 2.25 7.01 -2.39 -0.02 2.24 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -74.25 391.29 2.02 -72.22 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.26 Total: 31.03 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 7.14 Total: 4.55 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.42 Total: -126.73 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.99 Total: -28.01 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.25 2.02 -72.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036180445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.259 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds