Wall clock time and date at job start Tue Mar 31 2020 17:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.52523 * 2 1 4 4 C 1.53189 * 109.49750 * 120.08491 * 2 1 3 5 5 N 1.46929 * 108.77660 * 174.58832 * 4 2 1 6 6 C 1.34774 * 120.63395 * 126.36721 * 5 4 2 7 7 O 1.21496 * 119.99920 * 4.81664 * 6 5 4 8 8 C 1.48328 * 120.00121 * 184.54276 * 6 5 4 9 9 N 1.31495 * 127.15504 * 354.82606 * 8 6 5 10 10 O 1.21426 * 111.52530 * 179.97438 * 9 8 6 11 11 C 1.33189 * 111.57089 * 359.96607 * 10 9 8 12 12 C 1.35371 * 106.63534 * 359.79994 * 11 10 9 13 13 C 1.50070 * 124.93488 * 179.40752 * 12 11 10 14 14 C 1.53551 * 108.29560 * 344.49982 * 13 12 11 15 15 C 1.53101 * 109.51116 * 48.95447 * 14 13 12 16 16 C 1.50602 * 129.59960 * 180.18460 * 11 10 9 17 17 C 1.46921 * 118.73509 * 306.63856 * 5 4 2 18 18 C 1.52759 * 109.01178 * 53.31210 * 17 5 4 19 19 C 1.53040 * 109.38213 * 305.58751 * 18 17 5 20 20 H 1.09005 * 109.46123 * 301.22013 * 19 18 17 21 21 N 1.46502 * 109.46384 * 181.25719 * 19 18 17 22 22 C 1.36935 * 119.99753 * 84.92883 * 21 19 18 23 23 H 1.08005 * 120.00195 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00030 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00152 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99525 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.46983 * 90.00397 * 26 24 22 28 28 H 1.48506 * 109.46608 * 209.99668 * 26 24 22 29 29 H 1.48497 * 109.47755 * 329.99592 * 26 24 22 30 30 H 1.08994 * 109.46656 * 299.92004 * 1 2 3 31 31 H 1.09004 * 109.46905 * 59.91806 * 1 2 3 32 32 H 1.08999 * 109.47105 * 179.91681 * 1 2 3 33 33 H 1.08995 * 109.59159 * 54.79947 * 4 2 1 34 34 H 1.08999 * 109.58666 * 294.37272 * 4 2 1 35 35 H 1.09005 * 109.87291 * 224.68031 * 13 12 11 36 36 H 1.08993 * 109.51480 * 104.11254 * 13 12 11 37 37 H 1.08998 * 109.46149 * 288.93976 * 14 13 12 38 38 H 1.08997 * 109.45951 * 168.96578 * 14 13 12 39 39 H 1.08997 * 109.43285 * 170.06219 * 15 14 13 40 40 H 1.09008 * 109.42800 * 50.21639 * 15 14 13 41 41 H 1.09004 * 109.69376 * 282.91424 * 16 11 10 42 42 H 1.08997 * 109.70016 * 43.46803 * 16 11 10 43 43 H 1.09009 * 109.58773 * 173.14764 * 17 5 4 44 44 H 1.09001 * 109.58966 * 293.56958 * 17 5 4 45 45 H 1.09001 * 109.56845 * 185.55052 * 18 17 5 46 46 H 1.09003 * 109.38620 * 65.50755 * 18 17 5 47 47 H 0.96998 * 119.99559 * 264.93405 * 21 19 18 48 48 H 0.97004 * 119.99786 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2812 -0.3857 2.1779 7 8 3.7717 0.0261 3.2011 8 6 5.7580 -0.4060 2.0408 9 7 6.4565 -0.9088 1.0466 10 8 7.6495 -0.7708 1.2257 11 6 7.9033 -0.1499 2.3763 12 6 6.7044 0.1153 2.9462 13 6 6.5139 0.7991 4.2685 14 6 7.8549 0.7846 5.0163 15 6 8.9657 1.2750 4.0838 16 6 9.2247 0.2289 2.9916 17 6 4.1055 -1.4216 -0.0332 18 6 3.5709 -0.6951 -1.2660 19 6 2.0409 -0.7231 -1.2484 20 1 1.6967 -1.7573 -1.2353 21 7 1.5266 -0.0529 -2.4453 22 6 1.3965 -0.7492 -3.6173 23 1 1.6727 -1.7925 -3.6591 24 6 0.9097 -0.1141 -4.7515 25 7 0.7851 -0.7831 -5.8781 26 14 0.4327 1.6905 -4.6793 27 1 1.6110 2.5280 -5.0191 28 1 -0.6584 1.9534 -5.6519 29 1 -0.0340 2.0249 -3.3097 30 1 -0.3632 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 1.2979 34 1 1.7638 -0.1581 2.1388 35 1 5.7609 0.2710 4.8536 36 1 6.1960 1.8285 4.1036 37 1 8.0773 -0.2311 5.3435 38 1 7.7936 1.4406 5.8846 39 1 9.8784 1.4327 4.6585 40 1 8.6625 2.2144 3.6213 41 1 9.6915 -0.6528 3.4309 42 1 9.8789 0.6488 2.2276 43 1 5.1896 -1.3160 0.0100 44 1 3.8412 -2.4775 -0.0915 45 1 3.9335 -1.1897 -2.1671 46 1 3.9159 0.3389 -1.2546 47 1 1.2782 0.8840 -2.4076 48 1 0.4446 -0.3394 -6.6706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036193752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:52 Heat of formation + Delta-G solvation = 40.581240 kcal Electronic energy + Delta-G solvation = -29556.153119 eV Core-core repulsion = 25614.603693 eV Total energy + Delta-G solvation = -3941.549426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.29479 -40.14861 -38.16449 -37.67097 -34.91232 -34.13723 -32.77983 -31.57843 -31.29735 -30.60566 -29.85920 -26.96894 -25.62694 -24.76241 -23.65073 -23.15878 -22.39424 -21.55991 -20.41755 -19.96180 -19.20432 -18.01797 -17.54273 -17.35032 -16.83255 -15.92218 -15.40136 -15.14141 -14.94614 -14.55349 -14.34080 -14.30482 -14.04569 -13.67999 -13.56725 -13.49411 -13.29002 -13.03520 -12.73452 -12.50828 -12.47259 -12.20321 -11.79402 -11.49300 -11.42320 -11.36420 -11.24042 -11.07793 -10.99604 -10.86528 -10.63484 -10.44426 -10.38241 -10.25246 -10.08229 -9.77979 -9.58543 -9.35975 -8.91558 -8.60728 -7.27334 -5.78126 -3.13367 0.92707 1.45902 2.55568 2.83703 3.07618 3.36020 3.39452 3.44403 3.75324 4.13957 4.30586 4.39470 4.57904 4.60024 4.63266 4.75184 4.94931 5.01633 5.02710 5.07673 5.13719 5.23569 5.33194 5.34600 5.39911 5.50661 5.52337 5.58949 5.60261 5.66437 5.68528 5.70146 5.85661 5.90558 5.93797 5.97102 6.12712 6.17430 6.26617 6.31690 6.41165 6.52122 6.67587 6.78922 6.95314 7.30896 7.79232 7.97704 8.04366 8.40989 9.19167 9.91963 10.12175 11.40237 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002880 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.456216 B = 9720.830828 C =10349.968485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.596 3.404 7 O -0.531 6.531 8 C -0.007 4.007 9 N -0.328 5.328 10 O 0.118 5.882 11 C -0.035 4.035 12 C -0.154 4.154 13 C -0.045 4.045 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.036 4.036 17 C 0.076 3.924 18 C -0.148 4.148 19 C 0.188 3.812 20 H 0.057 0.943 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.601 2.297 23.133 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.381 3.619 7 O -0.407 6.407 8 C -0.164 4.164 9 N -0.034 5.034 10 O 0.050 5.950 11 C -0.100 4.100 12 C -0.159 4.159 13 C -0.082 4.082 14 C -0.161 4.161 15 C -0.157 4.157 16 C -0.074 4.074 17 C -0.047 4.047 18 C -0.189 4.189 19 C 0.078 3.922 20 H 0.075 0.925 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.917 1.708 22.341 27.484 hybrid contribution -0.427 1.574 0.160 1.638 sum 15.490 3.282 22.500 27.513 Atomic orbital electron populations 1.21669 0.93916 1.02228 1.01646 1.21797 0.96699 1.00005 0.94893 0.91331 1.21782 0.77689 1.01315 0.99292 1.48055 1.07214 1.58764 1.17982 1.16951 0.83097 0.78230 0.83611 1.90748 1.73417 1.48163 1.28399 1.23037 0.96603 1.03315 0.93474 1.74346 0.88966 1.19322 1.20780 1.84726 1.20064 1.56211 1.33993 1.24122 0.98763 0.99504 0.87578 1.20627 0.90302 1.04851 1.00153 1.20003 0.98094 1.00298 0.89852 1.21717 0.93893 1.02224 0.98240 1.21659 0.99690 0.98166 0.96169 1.20279 0.89224 1.00275 0.97582 1.22627 1.01131 0.97186 0.83742 1.22522 0.99530 1.00364 0.96460 1.20200 0.90653 0.96013 0.85331 0.92472 1.42764 1.78101 1.10194 1.07618 1.19055 1.36276 0.95813 0.85929 0.89196 1.24653 1.01401 0.97399 0.95617 1.69697 1.52184 1.35671 1.00601 0.86585 0.78201 0.86900 0.77022 1.21201 1.21779 1.20327 0.93515 0.91298 0.92478 0.90929 0.89101 0.89137 0.89978 0.91338 0.90593 0.90028 0.90971 0.88676 0.88774 0.86188 0.91312 0.89946 0.92586 0.80659 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.02 37.16 0.34 -1.78 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.12 1.77 5.71 -3.71 -0.02 1.75 16 5 N -0.59 -9.01 2.98 -173.97 -0.52 -9.53 16 6 C 0.60 9.37 7.72 -12.11 -0.09 9.28 16 7 O -0.53 -9.07 15.48 5.37 0.08 -8.98 16 8 C -0.01 -0.10 6.93 -82.82 -0.57 -0.67 16 9 N -0.33 -4.51 8.55 33.29 0.28 -4.22 16 10 O 0.12 1.38 11.18 19.19 0.21 1.59 16 11 C -0.04 -0.34 7.38 -35.38 -0.26 -0.60 16 12 C -0.15 -1.76 6.05 -104.91 -0.63 -2.39 16 13 C -0.05 -0.42 5.70 -27.90 -0.16 -0.57 16 14 C -0.12 -0.72 5.92 -26.39 -0.16 -0.87 16 15 C -0.12 -0.55 5.88 -26.45 -0.16 -0.71 16 16 C -0.04 -0.19 6.31 -27.71 -0.17 -0.36 16 17 C 0.08 1.16 6.30 -3.94 -0.02 1.13 16 18 C -0.15 -2.62 5.64 -26.83 -0.15 -2.77 16 19 C 0.19 3.56 2.20 -67.88 -0.15 3.41 16 20 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 21 N -0.74 -17.26 4.22 -53.38 -0.22 -17.49 16 22 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 23 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 26 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.22 7.36 -51.93 -0.38 0.84 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.32 7.03 -51.93 -0.37 0.95 16 35 H 0.09 0.94 7.76 -51.93 -0.40 0.54 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.37 8.12 -51.92 -0.42 -0.05 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.12 1.82 3.76 -73.70 -0.28 1.54 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.36 8.36 5.36 -40.82 -0.22 8.14 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -32.73 373.63 -8.74 -41.47 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.57 Total: 6.51 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.69 Total: -3.99 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.32 Total: -59.67 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.30 Total: -7.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.73 -8.74 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.052 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds