Wall clock time and date at job start Tue Mar 31 2020 17:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.52523 * 2 1 4 4 C 1.53189 * 109.49750 * 120.08491 * 2 1 3 5 5 N 1.46929 * 108.77660 * 174.58832 * 4 2 1 6 6 C 1.34774 * 120.63395 * 126.36721 * 5 4 2 7 7 O 1.21496 * 119.99920 * 4.81664 * 6 5 4 8 8 C 1.48328 * 120.00121 * 184.54276 * 6 5 4 9 9 N 1.31495 * 127.15504 * 354.82606 * 8 6 5 10 10 O 1.21426 * 111.52530 * 179.97438 * 9 8 6 11 11 C 1.33189 * 111.57089 * 359.96607 * 10 9 8 12 12 C 1.35371 * 106.63534 * 359.79994 * 11 10 9 13 13 C 1.50070 * 124.93488 * 179.40752 * 12 11 10 14 14 C 1.53551 * 108.29560 * 344.49982 * 13 12 11 15 15 C 1.53101 * 109.51116 * 48.95447 * 14 13 12 16 16 C 1.50602 * 129.59960 * 180.18460 * 11 10 9 17 17 C 1.46921 * 118.73509 * 306.63856 * 5 4 2 18 18 C 1.52759 * 109.01178 * 53.31210 * 17 5 4 19 19 C 1.53040 * 109.38213 * 305.58751 * 18 17 5 20 20 H 1.09005 * 109.46123 * 301.22013 * 19 18 17 21 21 N 1.46502 * 109.46384 * 181.25719 * 19 18 17 22 22 C 1.36935 * 119.99753 * 84.92883 * 21 19 18 23 23 H 1.08005 * 120.00195 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00030 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00152 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99525 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.46983 * 90.00397 * 26 24 22 28 28 H 1.48506 * 109.46608 * 209.99668 * 26 24 22 29 29 H 1.48497 * 109.47755 * 329.99592 * 26 24 22 30 30 H 1.08994 * 109.46656 * 299.92004 * 1 2 3 31 31 H 1.09004 * 109.46905 * 59.91806 * 1 2 3 32 32 H 1.08999 * 109.47105 * 179.91681 * 1 2 3 33 33 H 1.08995 * 109.59159 * 54.79947 * 4 2 1 34 34 H 1.08999 * 109.58666 * 294.37272 * 4 2 1 35 35 H 1.09005 * 109.87291 * 224.68031 * 13 12 11 36 36 H 1.08993 * 109.51480 * 104.11254 * 13 12 11 37 37 H 1.08998 * 109.46149 * 288.93976 * 14 13 12 38 38 H 1.08997 * 109.45951 * 168.96578 * 14 13 12 39 39 H 1.08997 * 109.43285 * 170.06219 * 15 14 13 40 40 H 1.09008 * 109.42800 * 50.21639 * 15 14 13 41 41 H 1.09004 * 109.69376 * 282.91424 * 16 11 10 42 42 H 1.08997 * 109.70016 * 43.46803 * 16 11 10 43 43 H 1.09009 * 109.58773 * 173.14764 * 17 5 4 44 44 H 1.09001 * 109.58966 * 293.56958 * 17 5 4 45 45 H 1.09001 * 109.56845 * 185.55052 * 18 17 5 46 46 H 1.09003 * 109.38620 * 65.50755 * 18 17 5 47 47 H 0.96998 * 119.99559 * 264.93405 * 21 19 18 48 48 H 0.97004 * 119.99786 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2812 -0.3857 2.1779 7 8 3.7717 0.0261 3.2011 8 6 5.7580 -0.4060 2.0408 9 7 6.4565 -0.9088 1.0466 10 8 7.6495 -0.7708 1.2257 11 6 7.9033 -0.1499 2.3763 12 6 6.7044 0.1153 2.9462 13 6 6.5139 0.7991 4.2685 14 6 7.8549 0.7846 5.0163 15 6 8.9657 1.2750 4.0838 16 6 9.2247 0.2289 2.9916 17 6 4.1055 -1.4216 -0.0332 18 6 3.5709 -0.6951 -1.2660 19 6 2.0409 -0.7231 -1.2484 20 1 1.6967 -1.7573 -1.2353 21 7 1.5266 -0.0529 -2.4453 22 6 1.3965 -0.7492 -3.6173 23 1 1.6727 -1.7925 -3.6591 24 6 0.9097 -0.1141 -4.7515 25 7 0.7851 -0.7831 -5.8781 26 14 0.4327 1.6905 -4.6793 27 1 1.6110 2.5280 -5.0191 28 1 -0.6584 1.9534 -5.6519 29 1 -0.0340 2.0249 -3.3097 30 1 -0.3632 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 1.2979 34 1 1.7638 -0.1581 2.1388 35 1 5.7609 0.2710 4.8536 36 1 6.1960 1.8285 4.1036 37 1 8.0773 -0.2311 5.3435 38 1 7.7936 1.4406 5.8846 39 1 9.8784 1.4327 4.6585 40 1 8.6625 2.2144 3.6213 41 1 9.6915 -0.6528 3.4309 42 1 9.8789 0.6488 2.2276 43 1 5.1896 -1.3160 0.0100 44 1 3.8412 -2.4775 -0.0915 45 1 3.9335 -1.1897 -2.1671 46 1 3.9159 0.3389 -1.2546 47 1 1.2782 0.8840 -2.4076 48 1 0.4446 -0.3394 -6.6706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036193752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:51 Heat of formation + Delta-G solvation = 21.132119 kcal Electronic energy + Delta-G solvation = -29556.996496 eV Core-core repulsion = 25614.603693 eV Total energy + Delta-G solvation = -3942.392804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.23115 -41.41745 -39.30201 -38.53068 -36.45290 -35.27724 -34.28584 -33.27854 -32.01014 -31.65586 -31.23013 -28.16370 -27.13537 -25.68519 -24.85816 -23.99232 -23.68043 -23.09138 -21.58827 -21.01106 -20.33536 -19.47513 -18.95570 -18.32954 -17.92420 -17.13718 -16.80971 -16.36541 -16.13288 -15.96253 -15.50315 -15.17276 -14.97685 -14.95666 -14.81013 -14.48477 -14.32311 -14.25861 -14.17834 -13.78851 -13.57022 -13.25732 -13.17211 -12.98510 -12.92323 -12.52963 -12.46388 -12.09699 -11.96330 -11.93725 -11.87087 -11.83926 -11.72567 -11.59926 -11.32561 -11.31526 -11.26213 -10.90391 -10.14051 -9.88512 -9.32002 -8.03037 -5.35751 -0.06359 0.60216 1.35076 1.37258 1.44597 1.56449 1.90755 1.93342 2.46360 2.70877 3.28261 3.33091 3.45915 3.57190 3.67723 3.84586 3.91051 3.96622 4.00831 4.03470 4.17979 4.23517 4.24762 4.34558 4.38602 4.47941 4.58308 4.60951 4.63515 4.71105 4.77657 4.89230 4.92199 4.94185 4.97153 5.01862 5.08744 5.16572 5.18510 5.20432 5.31720 5.34088 5.34877 5.44536 5.50960 5.76093 6.07385 6.20768 6.70005 7.01078 7.06163 7.81942 8.01548 9.18513 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002880 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.456216 B = 9720.830828 C =10349.968485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.063 0.937 4 C 0.125 3.875 5 N -0.591 5.591 6 C 0.593 3.407 7 O -0.549 6.549 8 C -0.034 4.034 9 N -0.350 5.350 10 O 0.121 5.879 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.045 4.045 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.036 4.036 17 C 0.086 3.914 18 C -0.137 4.137 19 C 0.183 3.817 20 H 0.050 0.950 21 N -0.746 5.746 22 C -0.221 4.221 23 H 0.059 0.941 24 C -0.062 4.062 25 N -0.983 5.983 26 Si 0.949 3.051 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.252 1.252 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.363 0.637 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.457 3.569 25.831 31.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.082 0.918 4 C 0.003 3.997 5 N -0.323 5.323 6 C 0.380 3.620 7 O -0.426 6.426 8 C -0.189 4.189 9 N -0.056 5.056 10 O 0.052 5.948 11 C -0.082 4.082 12 C -0.178 4.178 13 C -0.083 4.083 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.074 4.074 17 C -0.037 4.037 18 C -0.178 4.178 19 C 0.075 3.925 20 H 0.068 0.932 21 N -0.388 5.388 22 C -0.352 4.352 23 H 0.077 0.923 24 C -0.254 4.254 25 N -0.634 5.634 26 Si 0.777 3.223 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.177 1.177 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.196 0.804 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.776 2.979 25.098 30.900 hybrid contribution -0.893 1.098 -0.607 1.540 sum 16.883 4.077 24.492 30.025 Atomic orbital electron populations 1.21631 0.93043 1.02552 1.01857 1.21672 0.97351 0.99383 0.93921 0.91837 1.21780 0.77450 1.02004 0.98420 1.48092 1.07520 1.58798 1.17857 1.17186 0.83911 0.77605 0.83280 1.90725 1.74030 1.48898 1.28972 1.23050 0.96122 1.04941 0.94837 1.74231 0.89772 1.20284 1.21265 1.84681 1.19108 1.56099 1.34905 1.24941 1.00123 0.97103 0.86022 1.20959 0.90353 1.05537 1.00908 1.20056 0.99878 0.99273 0.89073 1.21724 0.92216 1.03076 0.98563 1.21701 1.00377 0.97437 0.95849 1.20639 0.87068 1.01544 0.98126 1.22517 1.01542 0.97142 0.82539 1.22324 0.98451 1.00003 0.97045 1.20400 0.91274 0.95679 0.85151 0.93232 1.42746 1.78336 1.10201 1.07520 1.18990 1.34133 0.94695 0.87422 0.92290 1.25411 1.02547 1.02089 0.95309 1.69870 1.54338 1.37736 1.01473 0.85501 0.77572 0.81220 0.78021 1.21015 1.22318 1.17682 0.90797 0.93524 0.92144 0.89495 0.88461 0.90943 0.90599 0.90843 0.89097 0.87058 0.91553 0.86309 0.86764 0.85559 0.90439 0.91886 0.93364 0.80370 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.02 71.98 0.65 -3.24 16 2 C -0.10 -3.22 2.46 -10.71 -0.03 -3.25 16 3 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.13 3.49 5.71 86.36 0.49 3.99 16 5 N -0.59 -17.75 2.98 -822.61 -2.45 -20.20 16 6 C 0.59 18.52 7.72 86.93 0.67 19.19 16 7 O -0.55 -18.61 15.48 -3.70 -0.06 -18.66 16 8 C -0.03 -0.94 6.93 42.55 0.30 -0.64 16 9 N -0.35 -9.46 8.55 -48.95 -0.42 -9.88 16 10 O 0.12 2.67 11.18 78.71 0.88 3.55 16 11 C -0.02 -0.29 7.38 24.99 0.18 -0.11 16 12 C -0.17 -3.76 6.05 -20.05 -0.12 -3.88 16 13 C -0.05 -0.79 5.70 29.84 0.17 -0.62 16 14 C -0.12 -1.06 5.92 30.81 0.18 -0.88 16 15 C -0.12 -0.65 5.88 30.77 0.18 -0.46 16 16 C -0.04 -0.25 6.31 29.96 0.19 -0.06 16 17 C 0.09 2.59 6.30 86.22 0.54 3.14 16 18 C -0.14 -4.92 5.64 30.53 0.17 -4.75 16 19 C 0.18 6.94 2.20 45.02 0.10 7.04 16 20 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 21 N -0.75 -34.60 4.22 -322.79 -1.36 -35.96 16 22 C -0.22 -12.51 10.41 84.03 0.87 -11.63 16 23 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 24 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 25 N -0.98 -63.30 13.97 21.65 0.30 -62.99 16 26 Si 0.95 46.09 27.74 68.60 1.90 48.00 16 27 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.58 7.36 -2.39 -0.02 1.56 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.65 7.03 -2.39 -0.02 2.64 16 35 H 0.07 1.51 7.76 -2.38 -0.02 1.49 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.07 0.48 8.12 -2.38 -0.02 0.46 16 41 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.13 3.82 3.76 -45.38 -0.17 3.64 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.36 16.49 5.36 -92.71 -0.50 16.00 16 48 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -73.11 373.63 4.08 -69.03 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.26 Total: 26.50 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.02 Total: 0.61 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -3.93 Total: -129.03 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.82 Total: -15.11 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 48.00 kcal Total: -73.11 4.08 -69.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.167 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds