Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08999 * 109.52021 * 2 1 4 4 C 1.53195 * 109.49328 * 239.91977 * 2 1 3 5 5 N 1.46927 * 108.76820 * 185.41275 * 4 2 1 6 6 C 1.34779 * 120.62608 * 233.60226 * 5 4 2 7 7 O 1.21490 * 120.00083 * 354.97756 * 6 5 4 8 8 C 1.48328 * 119.99615 * 174.97512 * 6 5 4 9 9 N 1.31500 * 127.15681 * 5.38290 * 8 6 5 10 10 O 1.21428 * 111.52697 * 179.85662 * 9 8 6 11 11 C 1.33196 * 111.56924 * 0.37391 * 10 9 8 12 12 C 1.35370 * 106.63466 * 359.82455 * 11 10 9 13 13 C 1.50066 * 124.94050 * 179.79999 * 12 11 10 14 14 C 1.53558 * 108.22055 * 343.85541 * 13 12 11 15 15 C 1.53104 * 109.50185 * 49.22904 * 14 13 12 16 16 C 1.50598 * 129.60519 * 179.82382 * 11 10 9 17 17 C 1.46924 * 118.74178 * 53.61027 * 5 4 2 18 18 C 1.53191 * 108.77437 * 306.38724 * 17 5 4 19 19 C 1.53037 * 109.49719 * 120.08098 * 2 1 3 20 20 H 1.09000 * 109.44950 * 61.29728 * 19 2 1 21 21 N 1.46502 * 109.45981 * 301.33740 * 19 2 1 22 22 C 1.36934 * 120.00368 * 154.93734 * 21 19 2 23 23 H 1.08005 * 119.99426 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00672 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99328 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00251 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46971 * 60.00625 * 26 24 22 28 28 H 1.48501 * 109.47094 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47627 * 300.00338 * 26 24 22 30 30 H 1.09001 * 109.46632 * 299.92149 * 1 2 3 31 31 H 1.09000 * 109.47143 * 59.92104 * 1 2 3 32 32 H 1.08993 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58444 * 305.19776 * 4 2 1 34 34 H 1.08995 * 109.58882 * 65.48064 * 4 2 1 35 35 H 1.09005 * 109.70980 * 103.58150 * 13 12 11 36 36 H 1.09001 * 109.71095 * 224.21134 * 13 12 11 37 37 H 1.09001 * 109.48838 * 289.20477 * 14 13 12 38 38 H 1.09007 * 109.44971 * 169.22172 * 14 13 12 39 39 H 1.08995 * 109.43018 * 170.05737 * 15 14 13 40 40 H 1.09006 * 109.42789 * 50.21322 * 15 14 13 41 41 H 1.09002 * 109.69475 * 282.99241 * 16 11 10 42 42 H 1.09001 * 109.69208 * 43.57984 * 16 11 10 43 43 H 1.08994 * 109.58826 * 186.59670 * 17 5 4 44 44 H 1.09010 * 109.58600 * 66.17457 * 17 5 4 45 45 H 1.08997 * 109.49620 * 174.58649 * 18 17 5 46 46 H 1.08994 * 109.49749 * 294.65426 * 18 17 5 47 47 H 0.97003 * 120.00212 * 334.93063 * 21 19 2 48 48 H 0.97002 * 119.99693 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2811 -0.3860 -2.1782 7 8 3.7717 0.0218 -3.2030 8 6 5.7576 -0.3963 -2.0370 9 7 6.4567 -0.8928 -1.0400 10 8 7.6494 -0.7501 -1.2175 11 6 7.9021 -0.1252 -2.3664 12 6 6.7031 0.1297 -2.9407 13 6 6.5109 0.8284 -4.2548 14 6 7.8216 1.5427 -4.6151 15 6 8.9928 0.5682 -4.4649 16 6 9.2226 0.2597 -2.9796 17 6 4.1054 -1.4267 0.0307 18 6 3.5709 -0.6950 1.2660 19 6 2.0409 -0.7231 1.2483 20 1 1.6967 -1.7572 1.2351 21 7 1.5266 -0.0529 2.4453 22 6 1.3952 -0.7494 3.6169 23 1 1.6704 -1.7930 3.6584 24 6 0.9084 -0.1144 4.7512 25 7 0.5736 1.1575 4.7006 26 14 0.7286 -1.0648 6.3492 27 1 2.0557 -1.5821 6.7694 28 1 0.1924 -0.1656 7.4023 29 1 -0.2044 -2.2021 6.1465 30 1 -0.3632 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7217 -1.2980 34 1 1.7615 -0.1593 -2.1391 35 1 6.2647 0.0990 -5.0265 36 1 5.7064 1.5589 -4.1685 37 1 7.9680 2.3922 -3.9480 38 1 7.7718 1.8946 -5.6456 39 1 9.8931 1.0156 -4.8858 40 1 8.7658 -0.3562 -4.9962 41 1 9.6171 1.1433 -2.4777 42 1 9.9280 -0.5653 -2.8805 43 1 5.1896 -1.3246 -0.0138 44 1 3.8376 -2.4819 0.0867 45 1 3.9335 -1.1896 2.1670 46 1 3.9164 0.3387 1.2543 47 1 1.2792 0.8843 2.4079 48 1 0.2330 1.6012 5.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036193753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = 36.645665 kcal Electronic energy + Delta-G solvation = -29485.158633 eV Core-core repulsion = 25543.438548 eV Total energy + Delta-G solvation = -3941.720086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.25579 -40.06496 -38.10732 -37.56564 -34.78560 -34.06791 -32.71761 -31.46387 -31.25909 -30.56473 -29.31694 -26.86685 -25.44810 -24.71346 -23.69839 -23.12027 -22.51272 -21.63304 -20.36681 -19.80850 -19.06521 -17.99079 -17.32869 -17.07327 -16.78967 -15.84841 -15.36780 -15.06740 -14.93159 -14.50873 -14.26564 -14.17195 -13.85870 -13.72622 -13.48469 -13.46465 -13.30116 -12.99003 -12.69697 -12.45707 -12.32215 -12.03887 -11.62643 -11.40120 -11.32403 -11.19114 -11.10270 -11.03897 -10.89120 -10.77449 -10.52413 -10.38955 -10.33928 -10.21862 -10.05790 -9.71139 -9.61018 -9.32641 -8.87449 -8.52533 -6.95230 -5.76577 -3.05105 0.96765 1.49994 2.59523 2.89186 3.13404 3.43585 3.48282 3.48990 3.79948 4.17656 4.34230 4.42034 4.58439 4.63856 4.66796 4.78874 4.99673 5.06073 5.11175 5.22050 5.25105 5.35152 5.36064 5.42916 5.44714 5.55151 5.56999 5.62062 5.69236 5.72144 5.77902 5.83303 5.89174 6.00256 6.03368 6.06940 6.23085 6.36316 6.40143 6.44185 6.53634 6.65055 6.83397 6.92339 7.07441 7.37858 7.69211 7.83765 8.09835 8.41744 9.52989 10.10366 10.45618 11.45958 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.002771 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.058614 B =10101.231826 C =10982.953060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.595 3.405 7 O -0.531 6.531 8 C -0.006 4.006 9 N -0.328 5.328 10 O 0.117 5.883 11 C -0.036 4.036 12 C -0.154 4.154 13 C -0.044 4.044 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.036 4.036 17 C 0.076 3.924 18 C -0.147 4.147 19 C 0.183 3.817 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.906 -1.754 -20.233 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.380 3.620 7 O -0.407 6.407 8 C -0.163 4.163 9 N -0.035 5.035 10 O 0.049 5.951 11 C -0.100 4.100 12 C -0.159 4.159 13 C -0.081 4.081 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.074 4.074 17 C -0.047 4.047 18 C -0.188 4.188 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.213 -2.271 -19.479 25.445 hybrid contribution -0.229 0.075 0.643 0.687 sum 15.985 -2.195 -18.836 24.801 Atomic orbital electron populations 1.21657 0.93898 1.01836 1.01919 1.21753 0.96690 1.00013 0.94550 0.91246 1.21805 0.77577 1.01204 0.99563 1.48047 1.07275 1.58605 1.17986 1.16953 0.83079 0.78306 0.83639 1.90747 1.73408 1.48292 1.28301 1.23058 0.96642 1.03391 0.93242 1.74346 0.88961 1.19430 1.20738 1.84725 1.20121 1.56016 1.34197 1.24114 0.98744 0.99431 0.87735 1.20629 0.90306 1.04733 1.00257 1.19988 0.98316 0.98917 0.90883 1.21731 0.93739 0.98300 1.02407 1.21651 0.99357 1.00551 0.94041 1.20277 0.89286 1.02675 0.95122 1.22719 1.01044 0.96937 0.84026 1.22633 1.00007 1.00260 0.95908 1.20219 0.90480 0.95658 0.86371 0.93395 1.42393 1.76515 1.11367 1.05764 1.19176 1.35901 0.94050 0.87738 0.91302 1.24726 1.02119 0.96022 0.98034 1.69652 1.50043 1.09447 1.28991 0.86289 0.77743 0.78703 0.83579 1.21325 1.21750 1.21308 0.90649 0.93763 0.92985 0.91186 0.89194 0.89856 0.89340 0.91288 0.90591 0.90053 0.91019 0.88647 0.88839 0.86310 0.91551 0.90527 0.92469 0.78241 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.03 37.16 0.34 -1.91 16 2 C -0.11 -1.89 2.46 -90.49 -0.22 -2.12 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.12 1.86 5.70 -3.71 -0.02 1.84 16 5 N -0.59 -9.39 2.97 -173.70 -0.52 -9.91 16 6 C 0.59 9.71 7.72 -12.11 -0.09 9.62 16 7 O -0.53 -9.39 15.62 5.37 0.08 -9.31 16 8 C -0.01 -0.08 6.94 -82.82 -0.57 -0.66 16 9 N -0.33 -4.65 8.56 33.29 0.28 -4.37 16 10 O 0.12 1.41 11.18 19.18 0.21 1.62 16 11 C -0.04 -0.35 7.38 -35.38 -0.26 -0.61 16 12 C -0.15 -1.82 6.04 -104.91 -0.63 -2.46 16 13 C -0.04 -0.42 5.65 -27.90 -0.16 -0.58 16 14 C -0.12 -0.78 5.92 -26.39 -0.16 -0.93 16 15 C -0.12 -0.57 5.88 -26.46 -0.16 -0.72 16 16 C -0.04 -0.20 6.31 -27.71 -0.17 -0.37 16 17 C 0.08 1.20 6.34 -3.71 -0.02 1.17 16 18 C -0.15 -2.71 5.66 -26.61 -0.15 -2.87 16 19 C 0.18 3.63 2.19 -67.89 -0.15 3.48 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -17.74 4.41 -53.38 -0.24 -17.98 16 22 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 26 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.07 1.46 7.36 -51.93 -0.38 1.08 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.12 1.85 3.75 -73.73 -0.28 1.58 16 44 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 45 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.38 10.16 7.51 -40.82 -0.31 9.86 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -31.80 377.06 -9.09 -40.89 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.63 Total: 7.57 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.68 Total: -4.22 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.26 Total: -59.59 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.30 Total: -7.69 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.80 -9.09 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.537 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds