Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08999 * 109.52021 * 2 1 4 4 C 1.53195 * 109.49328 * 239.91977 * 2 1 3 5 5 N 1.46927 * 108.76820 * 185.41275 * 4 2 1 6 6 C 1.34779 * 120.62608 * 233.60226 * 5 4 2 7 7 O 1.21490 * 120.00083 * 354.97756 * 6 5 4 8 8 C 1.48328 * 119.99615 * 174.97512 * 6 5 4 9 9 N 1.31500 * 127.15681 * 5.38290 * 8 6 5 10 10 O 1.21428 * 111.52697 * 179.85662 * 9 8 6 11 11 C 1.33196 * 111.56924 * 0.37391 * 10 9 8 12 12 C 1.35370 * 106.63466 * 359.82455 * 11 10 9 13 13 C 1.50066 * 124.94050 * 179.79999 * 12 11 10 14 14 C 1.53558 * 108.22055 * 343.85541 * 13 12 11 15 15 C 1.53104 * 109.50185 * 49.22904 * 14 13 12 16 16 C 1.50598 * 129.60519 * 179.82382 * 11 10 9 17 17 C 1.46924 * 118.74178 * 53.61027 * 5 4 2 18 18 C 1.53191 * 108.77437 * 306.38724 * 17 5 4 19 19 C 1.53037 * 109.49719 * 120.08098 * 2 1 3 20 20 H 1.09000 * 109.44950 * 61.29728 * 19 2 1 21 21 N 1.46502 * 109.45981 * 301.33740 * 19 2 1 22 22 C 1.36934 * 120.00368 * 154.93734 * 21 19 2 23 23 H 1.08005 * 119.99426 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00672 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99328 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00251 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46971 * 60.00625 * 26 24 22 28 28 H 1.48501 * 109.47094 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47627 * 300.00338 * 26 24 22 30 30 H 1.09001 * 109.46632 * 299.92149 * 1 2 3 31 31 H 1.09000 * 109.47143 * 59.92104 * 1 2 3 32 32 H 1.08993 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58444 * 305.19776 * 4 2 1 34 34 H 1.08995 * 109.58882 * 65.48064 * 4 2 1 35 35 H 1.09005 * 109.70980 * 103.58150 * 13 12 11 36 36 H 1.09001 * 109.71095 * 224.21134 * 13 12 11 37 37 H 1.09001 * 109.48838 * 289.20477 * 14 13 12 38 38 H 1.09007 * 109.44971 * 169.22172 * 14 13 12 39 39 H 1.08995 * 109.43018 * 170.05737 * 15 14 13 40 40 H 1.09006 * 109.42789 * 50.21322 * 15 14 13 41 41 H 1.09002 * 109.69475 * 282.99241 * 16 11 10 42 42 H 1.09001 * 109.69208 * 43.57984 * 16 11 10 43 43 H 1.08994 * 109.58826 * 186.59670 * 17 5 4 44 44 H 1.09010 * 109.58600 * 66.17457 * 17 5 4 45 45 H 1.08997 * 109.49620 * 174.58649 * 18 17 5 46 46 H 1.08994 * 109.49749 * 294.65426 * 18 17 5 47 47 H 0.97003 * 120.00212 * 334.93063 * 21 19 2 48 48 H 0.97002 * 119.99693 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2811 -0.3860 -2.1782 7 8 3.7717 0.0218 -3.2030 8 6 5.7576 -0.3963 -2.0370 9 7 6.4567 -0.8928 -1.0400 10 8 7.6494 -0.7501 -1.2175 11 6 7.9021 -0.1252 -2.3664 12 6 6.7031 0.1297 -2.9407 13 6 6.5109 0.8284 -4.2548 14 6 7.8216 1.5427 -4.6151 15 6 8.9928 0.5682 -4.4649 16 6 9.2226 0.2597 -2.9796 17 6 4.1054 -1.4267 0.0307 18 6 3.5709 -0.6950 1.2660 19 6 2.0409 -0.7231 1.2483 20 1 1.6967 -1.7572 1.2351 21 7 1.5266 -0.0529 2.4453 22 6 1.3952 -0.7494 3.6169 23 1 1.6704 -1.7930 3.6584 24 6 0.9084 -0.1144 4.7512 25 7 0.5736 1.1575 4.7006 26 14 0.7286 -1.0648 6.3492 27 1 2.0557 -1.5821 6.7694 28 1 0.1924 -0.1656 7.4023 29 1 -0.2044 -2.2021 6.1465 30 1 -0.3632 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7217 -1.2980 34 1 1.7615 -0.1593 -2.1391 35 1 6.2647 0.0990 -5.0265 36 1 5.7064 1.5589 -4.1685 37 1 7.9680 2.3922 -3.9480 38 1 7.7718 1.8946 -5.6456 39 1 9.8931 1.0156 -4.8858 40 1 8.7658 -0.3562 -4.9962 41 1 9.6171 1.1433 -2.4777 42 1 9.9280 -0.5653 -2.8805 43 1 5.1896 -1.3246 -0.0138 44 1 3.8376 -2.4819 0.0867 45 1 3.9335 -1.1896 2.1670 46 1 3.9164 0.3387 1.2543 47 1 1.2792 0.8843 2.4079 48 1 0.2330 1.6012 5.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036193753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = 18.418179 kcal Electronic energy + Delta-G solvation = -29485.949037 eV Core-core repulsion = 25543.438548 eV Total energy + Delta-G solvation = -3942.510489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.22906 -41.38817 -39.23457 -38.51979 -36.34836 -35.25989 -34.24720 -33.12239 -32.00861 -31.29341 -31.08714 -28.14477 -27.01848 -25.75035 -24.97419 -24.02942 -23.73003 -23.15163 -21.47282 -20.91849 -20.23445 -19.11261 -18.94973 -18.33127 -17.91410 -17.11731 -16.80675 -16.36830 -16.01554 -15.74151 -15.56889 -15.33429 -15.02228 -14.84927 -14.79491 -14.43783 -14.28614 -14.16955 -14.06476 -13.70748 -13.36989 -13.24095 -13.04419 -12.87778 -12.81716 -12.55563 -12.38925 -12.21862 -11.97304 -11.89513 -11.86231 -11.84918 -11.68493 -11.54715 -11.34251 -11.28321 -11.23366 -10.84268 -10.14023 -9.86321 -9.00625 -7.93753 -5.22014 -0.06122 0.60467 1.46334 1.48841 1.54732 1.57013 1.90793 1.94501 2.55536 2.71433 3.34051 3.39007 3.57676 3.70034 3.71260 3.87563 3.94655 3.98451 4.01055 4.06590 4.19465 4.25562 4.30751 4.36705 4.41260 4.48530 4.58593 4.64230 4.68218 4.73002 4.82336 4.89356 4.93146 4.95059 4.97827 5.02057 5.12131 5.18419 5.19423 5.22505 5.34116 5.34704 5.41257 5.44888 5.51105 5.54764 6.08831 6.27284 6.70505 7.01352 7.33753 8.08195 8.32817 9.29570 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.002771 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.058614 B =10101.231826 C =10982.953060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.126 3.874 5 N -0.592 5.592 6 C 0.592 3.408 7 O -0.550 6.550 8 C -0.034 4.034 9 N -0.349 5.349 10 O 0.122 5.878 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.044 4.044 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.036 4.036 17 C 0.086 3.914 18 C -0.135 4.135 19 C 0.180 3.820 20 H 0.050 0.950 21 N -0.730 5.730 22 C -0.234 4.234 23 H 0.076 0.924 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.970 3.030 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.278 1.278 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.220 -2.860 -21.750 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.004 3.996 5 N -0.323 5.323 6 C 0.379 3.621 7 O -0.428 6.428 8 C -0.190 4.190 9 N -0.055 5.055 10 O 0.053 5.947 11 C -0.082 4.082 12 C -0.178 4.178 13 C -0.081 4.081 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.074 4.074 17 C -0.037 4.037 18 C -0.176 4.176 19 C 0.072 3.928 20 H 0.068 0.932 21 N -0.369 5.369 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.799 3.201 27 H -0.206 1.206 28 H -0.224 1.224 29 H -0.204 1.204 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.203 0.797 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.538 -3.420 -21.026 28.239 hybrid contribution -0.860 0.430 1.021 1.402 sum 17.678 -2.989 -20.005 26.864 Atomic orbital electron populations 1.21567 0.93228 1.02265 1.01513 1.21617 0.97173 0.98954 0.94258 0.92926 1.21764 0.77517 1.01965 0.98311 1.48097 1.07492 1.58698 1.17992 1.17217 0.83980 0.77628 0.83311 1.90721 1.74070 1.49020 1.28964 1.23046 0.96068 1.05133 0.94720 1.74223 0.89783 1.20361 1.21130 1.84678 1.19110 1.55845 1.35081 1.24941 1.00093 0.97017 0.86100 1.20964 0.90400 1.05421 1.01037 1.20042 0.99766 0.98423 0.89919 1.21742 0.92425 0.98301 1.03294 1.21691 0.99748 1.00254 0.93485 1.20646 0.87157 1.04278 0.95309 1.22632 1.01464 0.97109 0.82520 1.22420 0.98821 0.99400 0.96998 1.20412 0.91132 0.95488 0.85799 0.93238 1.42552 1.76822 1.10839 1.06673 1.19551 1.34132 0.94372 0.88572 0.90634 1.25512 1.02992 0.96952 1.01323 1.69817 1.51850 1.11057 1.29407 0.85260 0.77880 0.77394 0.79533 1.20556 1.22442 1.20368 0.93887 0.91264 0.92098 0.89300 0.88815 0.90059 0.91564 0.91284 0.89013 0.87071 0.91113 0.86705 0.86400 0.85631 0.90042 0.91696 0.94357 0.79725 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.03 71.99 0.65 -3.58 16 2 C -0.10 -3.46 2.46 -10.71 -0.03 -3.49 16 3 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.13 3.80 5.70 86.36 0.49 4.29 16 5 N -0.59 -18.75 2.97 -821.76 -2.44 -21.19 16 6 C 0.59 19.44 7.72 86.93 0.67 20.11 16 7 O -0.55 -19.64 15.62 -3.68 -0.06 -19.70 16 8 C -0.03 -0.98 6.94 42.55 0.30 -0.69 16 9 N -0.35 -9.74 8.56 -48.94 -0.42 -10.16 16 10 O 0.12 2.77 11.18 78.64 0.88 3.65 16 11 C -0.02 -0.30 7.38 24.99 0.18 -0.11 16 12 C -0.17 -3.95 6.04 -20.05 -0.12 -4.07 16 13 C -0.04 -0.82 5.65 29.84 0.17 -0.65 16 14 C -0.12 -1.21 5.92 30.82 0.18 -1.03 16 15 C -0.11 -0.66 5.88 30.77 0.18 -0.48 16 16 C -0.04 -0.27 6.31 29.96 0.19 -0.08 16 17 C 0.09 2.67 6.34 86.36 0.55 3.22 16 18 C -0.14 -5.07 5.66 30.67 0.17 -4.90 16 19 C 0.18 7.22 2.19 45.02 0.10 7.31 16 20 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 21 N -0.73 -36.86 4.41 -322.81 -1.42 -38.28 16 22 C -0.23 -12.95 9.93 84.03 0.83 -12.11 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 26 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.04 1.70 7.36 -2.39 -0.02 1.68 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.09 2.80 7.04 -2.39 -0.02 2.78 16 35 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 37 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.07 0.47 8.12 -2.38 -0.02 0.45 16 41 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.13 3.89 3.75 -45.43 -0.17 3.72 16 44 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.37 20.45 7.51 -92.71 -0.70 19.76 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.73 377.06 3.95 -66.78 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.12 Total: 30.21 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.99 Total: -0.15 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -4.00 Total: -129.26 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.82 Total: -16.05 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -70.73 3.95 -66.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.198 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds