Wall clock time and date at job start Tue Mar 31 2020 17:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49280 * 2 1 4 4 C 1.53185 * 109.49859 * 239.90579 * 2 1 3 5 5 N 1.46926 * 108.77627 * 185.41307 * 4 2 1 6 6 C 1.34776 * 120.63682 * 233.63033 * 5 4 2 7 7 O 1.21605 * 120.00327 * 172.84332 * 6 5 4 8 8 C 1.47425 * 119.99359 * 352.84016 * 6 5 4 9 9 C 1.36092 * 126.44846 * 172.76099 * 8 6 5 10 10 O 1.34255 * 106.94943 * 179.97438 * 9 8 6 11 11 C 1.34040 * 108.22982 * 0.02562 * 10 9 8 12 12 C 1.50704 * 125.38191 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47087 * 269.97401 * 12 11 10 14 14 C 1.52992 * 117.49961 * 243.74165 * 13 12 11 15 15 C 1.52995 * 117.49546 * 175.08235 * 13 12 11 16 16 N 1.29939 * 109.24357 * 359.74260 * 11 10 9 17 17 C 1.46998 * 118.75484 * 53.60635 * 5 4 2 18 18 C 1.53199 * 108.73537 * 306.41198 * 17 5 4 19 19 C 1.53031 * 109.49506 * 120.06199 * 2 1 3 20 20 H 1.09007 * 109.46239 * 61.30142 * 19 2 1 21 21 N 1.46505 * 109.45356 * 301.33300 * 19 2 1 22 22 C 1.36936 * 119.99844 * 154.93802 * 21 19 2 23 23 H 1.07998 * 120.00483 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99620 * 180.02562 * 22 21 19 25 25 N 1.31619 * 119.99878 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00031 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47248 * 89.99950 * 26 24 22 28 28 H 1.48505 * 109.47410 * 209.99965 * 26 24 22 29 29 H 1.48497 * 109.47535 * 330.00138 * 26 24 22 30 30 H 1.08994 * 109.47270 * 299.94035 * 1 2 3 31 31 H 1.09010 * 109.46745 * 59.93692 * 1 2 3 32 32 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58738 * 305.19992 * 4 2 1 34 34 H 1.08997 * 109.58879 * 65.62713 * 4 2 1 35 35 H 1.08002 * 126.52246 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.46316 * 29.97866 * 12 11 10 37 37 H 1.09000 * 109.47201 * 149.97473 * 12 11 10 38 38 H 1.09003 * 115.55122 * 29.41623 * 13 12 11 39 39 H 1.09003 * 117.50251 * 0.02562 * 14 13 12 40 40 H 1.09006 * 117.50129 * 145.02379 * 14 13 12 41 41 H 1.09008 * 117.50000 * 214.98022 * 15 13 12 42 42 H 1.08998 * 117.50122 * 359.97438 * 15 13 12 43 43 H 1.08996 * 109.63385 * 186.62337 * 17 5 4 44 44 H 1.09001 * 109.58585 * 66.17142 * 17 5 4 45 45 H 1.08995 * 109.49371 * 294.65018 * 18 17 5 46 46 H 1.09004 * 109.49507 * 174.59143 * 18 17 5 47 47 H 0.96994 * 119.99692 * 334.94117 * 21 19 2 48 48 H 0.97001 * 120.00129 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7241 -1.2493 5 7 3.5046 -0.8293 -1.1693 6 6 4.2813 -0.3861 -2.1777 7 8 5.4900 -0.3582 -2.0472 8 6 3.6654 0.0649 -3.4389 9 6 4.3037 0.6612 -4.4825 10 8 3.3754 0.9051 -5.4213 11 6 2.1929 0.4691 -4.9650 12 6 0.8858 0.5513 -5.7105 13 6 0.1913 1.8734 -5.3780 14 6 -1.1524 1.8020 -4.6501 15 6 -1.1020 2.1999 -6.1273 16 7 2.3526 -0.0412 -3.7807 17 6 4.1060 -1.4268 0.0316 18 6 3.5708 -0.6946 1.2662 19 6 2.0407 -0.7226 1.2485 20 1 1.6967 -1.7569 1.2358 21 7 1.5264 -0.0519 2.4452 22 6 1.3950 -0.7480 3.6171 23 1 1.6708 -1.7913 3.6594 24 6 0.9071 -0.1126 4.7507 25 7 0.7813 -0.7814 5.8773 26 14 0.4307 1.6921 4.6778 27 1 -1.0001 1.8114 4.2983 28 1 0.6432 2.3145 6.0093 29 1 1.2700 2.3853 3.6678 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7219 -1.2976 34 1 1.7639 -0.1584 -2.1388 35 1 5.3567 0.8933 -4.5440 36 1 1.0753 0.4999 -6.7827 37 1 0.2457 -0.2798 -5.4145 38 1 0.8536 2.7034 -5.1317 39 1 -1.5417 0.8131 -4.4077 40 1 -1.3745 2.5852 -3.9252 41 1 -1.2909 3.2449 -6.3737 42 1 -1.4579 1.4731 -6.8574 43 1 5.1903 -1.3247 -0.0123 44 1 3.8383 -2.4819 0.0880 45 1 3.9159 0.3392 1.2540 46 1 3.9334 -1.1885 2.1678 47 1 1.2790 0.8852 2.4073 48 1 0.4400 -0.3376 6.6694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036242000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:36 Heat of formation + Delta-G solvation = 11.799176 kcal Electronic energy + Delta-G solvation = -29341.357504 eV Core-core repulsion = 25398.559994 eV Total energy + Delta-G solvation = -3942.797510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.53247 -41.21460 -39.14059 -38.43429 -36.45047 -35.89821 -34.28122 -33.33686 -32.77838 -31.67172 -28.97597 -27.66958 -26.90584 -25.40814 -23.64857 -23.36845 -23.15582 -22.55373 -21.70907 -21.36182 -20.55147 -19.57665 -18.61425 -17.95830 -17.75175 -17.09028 -16.76595 -16.61992 -16.19640 -16.04104 -15.58689 -15.17898 -15.13479 -14.92016 -14.78210 -14.51363 -14.42149 -14.18893 -13.85871 -13.71051 -13.45360 -13.11654 -12.95559 -12.86226 -12.72313 -12.55225 -12.29004 -12.25864 -12.17808 -12.00487 -11.88289 -11.78540 -11.63566 -11.44763 -11.24934 -10.96493 -10.86970 -10.67389 -10.12951 -9.69484 -9.29068 -8.01221 -5.33484 0.04121 0.87993 1.36404 1.38923 1.45951 1.52918 1.85726 2.13660 2.48214 2.72212 2.96037 3.29664 3.43007 3.56160 3.75415 3.78084 3.84192 4.02469 4.05801 4.09779 4.13640 4.24391 4.30513 4.32038 4.44913 4.46970 4.54887 4.62851 4.69786 4.74991 4.77714 4.79127 4.86112 4.91441 4.94757 5.02021 5.11800 5.13664 5.23644 5.25815 5.32371 5.35429 5.38955 5.51492 5.63878 5.78531 6.22983 6.23705 6.47384 6.95400 7.08567 7.84926 8.04492 9.20569 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.003385 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.261704 B = 8270.183213 C = 9999.291483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 H 0.058 0.942 4 C 0.099 3.901 5 N -0.592 5.592 6 C 0.595 3.405 7 O -0.574 6.574 8 C -0.096 4.096 9 C 0.031 3.969 10 O -0.191 6.191 11 C 0.211 3.789 12 C 0.009 3.991 13 C -0.163 4.163 14 C -0.185 4.185 15 C -0.159 4.159 16 N -0.470 5.470 17 C 0.120 3.880 18 C -0.140 4.140 19 C 0.182 3.818 20 H 0.048 0.952 21 N -0.746 5.746 22 C -0.221 4.221 23 H 0.058 0.942 24 C -0.063 4.063 25 N -0.985 5.985 26 Si 0.950 3.050 27 H -0.275 1.275 28 H -0.299 1.299 29 H -0.259 1.259 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.255 0.745 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.363 0.637 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 5.202 -32.106 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.076 0.924 4 C -0.023 4.023 5 N -0.322 5.322 6 C 0.384 3.616 7 O -0.455 6.455 8 C -0.215 4.215 9 C -0.043 4.043 10 O -0.077 6.077 11 C 0.002 3.998 12 C -0.028 4.028 13 C -0.182 4.182 14 C -0.222 4.222 15 C -0.196 4.196 16 N -0.200 5.200 17 C -0.003 4.003 18 C -0.181 4.181 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.388 5.388 22 C -0.352 4.352 23 H 0.076 0.924 24 C -0.254 4.254 25 N -0.636 5.636 26 Si 0.778 3.222 27 H -0.201 1.201 28 H -0.226 1.226 29 H -0.184 1.184 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.270 0.730 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.196 0.804 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.844 4.754 -31.533 31.900 hybrid contribution 0.565 1.160 1.013 1.641 sum -0.279 5.914 -30.519 31.088 Atomic orbital electron populations 1.21590 0.93123 1.02321 1.01684 1.21683 0.97316 0.99124 0.94186 0.92355 1.22700 0.76993 1.02362 1.00256 1.48035 1.08332 1.58683 1.17117 1.17146 0.85409 0.76746 0.82276 1.90770 1.14582 1.57719 1.82390 1.21581 0.91065 1.10584 0.98251 1.25706 0.96260 0.96962 0.85386 1.84435 1.17754 1.63190 1.42286 1.26983 0.88327 0.94172 0.90297 1.19973 0.84160 0.98629 1.00075 1.22082 0.91046 0.97712 1.07334 1.23170 0.99461 1.03744 0.95782 1.23104 0.98335 1.03333 0.94843 1.70532 1.15678 1.21189 1.12580 1.21635 0.98870 0.97010 0.82789 1.22437 0.98740 0.99992 0.96930 1.20421 0.91057 0.95694 0.85407 0.93398 1.42769 1.78429 1.10026 1.07593 1.19012 1.33927 0.94611 0.87679 0.92354 1.25412 1.02614 1.02098 0.95279 1.69874 1.54403 1.37757 1.01532 0.85484 0.78746 0.81276 0.76706 1.20093 1.22553 1.18412 0.93853 0.90589 0.92437 0.90975 0.83624 0.72961 0.85725 0.86059 0.88633 0.87725 0.89381 0.88206 0.86786 0.89676 0.90102 0.93376 0.92097 0.80409 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.03 71.98 0.65 -3.01 16 2 C -0.10 -3.16 2.46 -10.72 -0.03 -3.19 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.10 2.65 5.38 86.36 0.46 3.11 16 5 N -0.59 -17.49 2.97 -822.60 -2.45 -19.94 16 6 C 0.60 17.77 7.67 86.66 0.67 18.44 16 7 O -0.57 -19.75 16.32 -4.05 -0.07 -19.82 16 8 C -0.10 -2.29 6.66 40.41 0.27 -2.02 16 9 C 0.03 0.55 11.95 67.32 0.80 1.35 16 10 O -0.19 -3.00 10.73 0.50 0.01 -3.00 16 11 C 0.21 3.29 7.51 88.39 0.66 3.96 16 12 C 0.01 0.08 6.12 29.85 0.18 0.26 16 13 C -0.16 -1.55 5.72 -10.80 -0.06 -1.61 16 14 C -0.18 -1.89 10.18 30.61 0.31 -1.58 16 15 C -0.16 -1.09 10.25 30.62 0.31 -0.78 16 16 N -0.47 -9.85 7.85 -293.03 -2.30 -12.15 16 17 C 0.12 3.71 6.45 86.35 0.56 4.26 16 18 C -0.14 -5.10 5.66 30.67 0.17 -4.93 16 19 C 0.18 6.94 2.19 45.01 0.10 7.04 16 20 H 0.05 1.91 8.08 -2.38 -0.02 1.90 16 21 N -0.75 -34.74 4.21 -322.81 -1.36 -36.10 16 22 C -0.22 -12.55 10.41 84.03 0.87 -11.67 16 23 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 24 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.98 -63.52 13.97 21.65 0.30 -63.22 16 26 Si 0.95 46.12 27.73 68.60 1.90 48.02 16 27 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 30 H 0.04 1.42 7.36 -2.39 -0.02 1.40 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.15 3.62 4.14 -16.58 -0.07 3.55 16 35 H 0.25 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.80 7.88 -2.39 -0.02 0.78 16 38 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 39 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.08 2.70 7.00 -2.39 -0.02 2.68 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.36 16.53 5.37 -92.71 -0.50 16.04 16 48 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -73.91 387.58 2.80 -71.11 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.35 Total: 28.73 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.41 Total: 6.37 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -5.80 Total: -131.41 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.06 Total: -22.82 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Total: -73.91 2.80 -71.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036242000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.905 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds