Wall clock time and date at job start Tue Mar 31 2020 17:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52484 * 2 1 4 4 C 1.53194 * 109.50021 * 239.91065 * 2 1 3 5 5 N 1.46918 * 108.77763 * 185.41356 * 4 2 1 6 6 C 1.34775 * 120.63024 * 233.59407 * 5 4 2 7 7 O 1.21608 * 120.00188 * 353.81528 * 6 5 4 8 8 C 1.47423 * 119.99966 * 173.81985 * 6 5 4 9 9 C 1.36096 * 126.44886 * 173.32396 * 8 6 5 10 10 O 1.34253 * 106.95153 * 179.84105 * 9 8 6 11 11 C 1.34055 * 108.22477 * 0.42788 * 10 9 8 12 12 C 1.50703 * 125.37841 * 179.76529 * 11 10 9 13 13 C 1.53777 * 113.61298 * 37.45607 * 12 11 10 14 14 C 1.53778 * 87.08043 * 220.01664 * 13 12 11 15 15 C 1.53777 * 113.61389 * 299.95747 * 12 11 10 16 16 N 1.29938 * 109.24259 * 359.72858 * 11 10 9 17 17 C 1.46925 * 118.74266 * 53.61201 * 5 4 2 18 18 C 1.53203 * 108.77244 * 306.39279 * 17 5 4 19 19 C 1.53045 * 109.31368 * 54.63209 * 18 17 5 20 20 H 1.09002 * 109.45919 * 58.65151 * 19 18 17 21 21 N 1.46494 * 109.45937 * 178.61465 * 19 18 17 22 22 C 1.36933 * 119.99825 * 274.99711 * 21 19 18 23 23 H 1.07997 * 120.00519 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99826 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00069 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00084 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47234 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47582 * 120.00203 * 26 24 22 29 29 H 1.48503 * 109.47461 * 240.00481 * 26 24 22 30 30 H 1.08998 * 109.46993 * 299.92506 * 1 2 3 31 31 H 1.08999 * 109.46929 * 59.92754 * 1 2 3 32 32 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.57941 * 65.62722 * 4 2 1 34 34 H 1.08998 * 109.70319 * 305.27671 * 4 2 1 35 35 H 1.07999 * 126.52313 * 0.02562 * 9 8 6 36 36 H 1.08999 * 112.84522 * 168.76110 * 12 11 10 37 37 H 1.09003 * 113.61848 * 334.56739 * 13 12 11 38 38 H 1.08999 * 113.61599 * 105.47239 * 13 12 11 39 39 H 1.09001 * 113.61806 * 270.88289 * 14 13 12 40 40 H 1.09006 * 113.68951 * 139.98617 * 14 13 12 41 41 H 1.08996 * 113.61827 * 254.52787 * 15 12 11 42 42 H 1.09003 * 113.61838 * 25.43296 * 15 12 11 43 43 H 1.08992 * 109.59177 * 186.60800 * 17 5 4 44 44 H 1.09000 * 109.58692 * 66.17267 * 17 5 4 45 45 H 1.09001 * 109.49723 * 294.68269 * 18 17 5 46 46 H 1.09000 * 109.52419 * 174.60056 * 18 17 5 47 47 H 0.97001 * 120.00036 * 95.00048 * 21 19 18 48 48 H 0.97006 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7240 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2811 -0.3866 -2.1781 7 8 3.7721 0.0016 -3.2121 8 6 5.7476 -0.3730 -2.0281 9 6 6.6568 -0.0769 -2.9966 10 8 7.8726 -0.1799 -2.4368 11 6 7.7150 -0.5406 -1.1553 12 6 8.8318 -0.7706 -0.1699 13 6 10.0066 0.2085 -0.3307 14 6 10.9367 -0.9866 -0.0636 15 6 9.8049 -1.8844 -0.5907 16 7 6.4472 -0.6598 -0.8969 17 6 4.1054 -1.4267 0.0309 18 6 3.5709 -0.6949 1.2662 19 6 2.0408 -0.7230 1.2485 20 1 1.6967 -1.7572 1.2355 21 7 1.5265 -0.0528 2.4453 22 6 1.3951 -0.7493 3.6169 23 1 1.6709 -1.7926 3.6588 24 6 0.9083 -0.1141 4.7511 25 7 0.5726 1.1575 4.7003 26 14 0.7296 -1.0641 6.3496 27 1 1.1725 -2.4665 6.1441 28 1 1.5674 -0.4297 7.3988 29 1 -0.6926 -1.0512 6.7768 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1581 -2.1388 34 1 1.6054 -1.7217 -1.3004 35 1 6.4410 0.1928 -4.0199 36 1 8.4776 -0.8650 0.8566 37 1 10.0994 0.6178 -1.3367 38 1 10.0460 0.9742 0.4441 39 1 11.1593 -1.1392 0.9925 40 1 11.8288 -0.9957 -0.6899 41 1 9.6817 -2.8084 -0.0259 42 1 9.8426 -2.0475 -1.6678 43 1 5.1896 -1.3246 -0.0135 44 1 3.8376 -2.4818 0.0870 45 1 3.9159 0.3390 1.2541 46 1 3.9334 -1.1890 2.1676 47 1 1.2791 0.8844 2.4079 48 1 0.2321 1.6013 5.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036247429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:25 Heat of formation + Delta-G solvation = 7.732041 kcal Electronic energy + Delta-G solvation = -29193.197467 eV Core-core repulsion = 25250.223592 eV Total energy + Delta-G solvation = -3942.973875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.58747 -41.21360 -39.53687 -39.02437 -36.44233 -35.89551 -34.32588 -33.05878 -31.78746 -31.01993 -28.04934 -27.23146 -26.74079 -26.56729 -25.11753 -23.89105 -23.17594 -22.78453 -21.55330 -20.84036 -19.87290 -19.08402 -18.61110 -18.03887 -17.81774 -17.05912 -16.79651 -16.61879 -16.19467 -16.09116 -15.72628 -15.48963 -15.19025 -14.89953 -14.66911 -14.38901 -14.03223 -13.75179 -13.67287 -13.51995 -13.35639 -13.31514 -13.01137 -12.88699 -12.79325 -12.51010 -12.41536 -12.22678 -12.08642 -11.92514 -11.87144 -11.74829 -11.50390 -11.41701 -11.38003 -11.18019 -11.08549 -10.58619 -10.10768 -9.67687 -8.95757 -7.91230 -5.19030 0.02108 0.83265 1.48236 1.48421 1.49119 1.58475 1.87073 2.12333 2.57798 2.72357 3.40553 3.43864 3.55590 3.65446 3.76848 3.79934 3.81052 3.93249 4.02073 4.05650 4.16137 4.33644 4.35913 4.42896 4.46552 4.55615 4.66242 4.71195 4.74383 4.75313 4.80534 4.82070 4.89824 4.93695 5.01838 5.07341 5.11985 5.14540 5.15385 5.25311 5.35338 5.46009 5.51527 5.52105 5.55108 5.72356 6.22711 6.30313 6.47015 6.95326 7.36385 8.11612 8.36218 9.32610 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.003202 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.926493 B = 8742.313719 C =10754.446513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.051 0.949 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.596 3.404 7 O -0.571 6.571 8 C -0.098 4.098 9 C 0.033 3.967 10 O -0.187 6.187 11 C 0.218 3.782 12 C -0.033 4.033 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.125 4.125 16 N -0.479 5.479 17 C 0.074 3.926 18 C -0.129 4.129 19 C 0.179 3.821 20 H 0.046 0.954 21 N -0.731 5.731 22 C -0.230 4.230 23 H 0.076 0.924 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.260 0.740 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.061 -6.109 -16.002 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.003 3.997 5 N -0.320 5.320 6 C 0.384 3.616 7 O -0.452 6.452 8 C -0.216 4.216 9 C -0.041 4.041 10 O -0.072 6.072 11 C 0.010 3.990 12 C -0.052 4.052 13 C -0.169 4.169 14 C -0.166 4.166 15 C -0.164 4.164 16 N -0.208 5.208 17 C -0.049 4.049 18 C -0.170 4.170 19 C 0.070 3.930 20 H 0.064 0.936 21 N -0.370 5.370 22 C -0.362 4.362 23 H 0.094 0.906 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.799 3.201 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.224 1.224 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.276 0.724 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.170 0.830 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.202 0.798 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 20.539 -6.254 -15.826 26.673 hybrid contribution -0.693 0.524 0.674 1.099 sum 19.846 -5.730 -15.152 25.618 Atomic orbital electron populations 1.21568 0.93489 1.02143 1.01400 1.21601 0.96954 0.98908 0.94474 0.93063 1.21705 0.78399 1.01578 0.98036 1.48008 1.07005 1.58631 1.18311 1.17098 0.84499 0.76970 0.82999 1.90757 1.74709 1.50955 1.28746 1.21679 0.95237 1.12806 0.91925 1.25763 0.79460 0.98239 1.00666 1.84382 1.32194 1.65812 1.24855 1.26911 0.93686 0.95945 0.82464 1.21705 0.87208 1.01198 0.95130 1.23042 0.93143 0.97283 1.03451 1.22802 0.96990 0.94027 1.02821 1.23029 0.94003 0.97050 1.02285 1.70279 1.03459 1.20692 1.26371 1.22959 1.04093 0.95864 0.81964 1.22333 0.98058 0.99405 0.97244 1.20444 0.91689 0.95173 0.85651 0.93634 1.42579 1.76870 1.10804 1.06726 1.19626 1.33680 0.94347 0.88533 0.90630 1.25501 1.03142 0.96950 1.01297 1.69833 1.52100 1.11111 1.29211 0.85124 0.76649 0.78302 0.80021 1.18925 1.22333 1.22352 0.93967 0.91378 0.92210 0.89165 0.89746 0.72435 0.84620 0.89351 0.89875 0.88482 0.89564 0.89495 0.89507 0.82964 0.91455 0.94516 0.92058 0.79811 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.03 71.98 0.65 -3.67 16 2 C -0.10 -3.50 2.46 -10.71 -0.03 -3.53 16 3 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.13 3.83 5.70 86.36 0.49 4.32 16 5 N -0.59 -18.59 2.97 -822.79 -2.45 -21.04 16 6 C 0.60 18.81 7.68 86.66 0.67 19.47 16 7 O -0.57 -19.84 16.34 -4.06 -0.07 -19.91 16 8 C -0.10 -2.61 6.72 40.41 0.27 -2.34 16 9 C 0.03 0.64 11.95 67.32 0.80 1.44 16 10 O -0.19 -3.40 10.39 0.36 0.00 -3.40 16 11 C 0.22 4.34 7.33 88.39 0.65 4.99 16 12 C -0.03 -0.45 4.29 -11.02 -0.05 -0.50 16 13 C -0.13 -1.32 7.62 31.12 0.24 -1.09 16 14 C -0.13 -0.90 8.08 31.12 0.25 -0.65 16 15 C -0.13 -1.19 7.63 31.12 0.24 -0.95 16 16 N -0.48 -12.31 7.74 -293.02 -2.27 -14.57 16 17 C 0.07 2.28 6.33 86.37 0.55 2.83 16 18 C -0.13 -4.85 5.66 30.68 0.17 -4.68 16 19 C 0.18 7.24 2.19 45.02 0.10 7.33 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -37.11 4.41 -322.81 -1.42 -38.53 16 22 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 23 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 26 Si 0.97 46.37 29.55 68.60 2.03 48.39 16 27 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 30 H 0.04 1.69 7.36 -2.39 -0.02 1.68 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.75 7.05 -2.39 -0.02 2.74 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.26 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.14 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.09 0.92 7.81 -2.39 -0.02 0.90 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 43 H 0.15 4.56 3.67 -51.33 -0.19 4.37 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.37 20.55 7.51 -92.71 -0.70 19.85 16 48 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -70.68 385.35 2.51 -68.17 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.09 Total: 33.50 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.30 Total: 7.14 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -5.85 Total: -133.90 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.68 2.51 -68.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036247429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.900 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds