Wall clock time and date at job start Tue Mar 31 2020 17:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.91625 * 2 1 4 4 C 1.54911 * 111.00572 * 236.09285 * 2 1 3 5 5 N 1.47425 * 104.83222 * 204.91618 * 4 2 1 6 6 C 1.34781 * 125.64620 * 204.09317 * 5 4 2 7 7 O 1.21603 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.47395 * 119.99634 * 180.02562 * 6 5 4 9 9 C 1.37355 * 128.56690 * 359.97438 * 8 6 5 10 10 O 1.33493 * 106.34070 * 180.02562 * 9 8 6 11 11 N 1.20659 * 113.16192 * 359.97438 * 10 9 8 12 12 C 1.30020 * 112.29561 * 0.02562 * 11 10 9 13 13 C 1.50702 * 127.33295 * 180.26037 * 12 11 10 14 14 C 1.54264 * 110.03449 * 56.84747 * 13 12 11 15 15 C 1.54880 * 104.19660 * 217.10603 * 14 13 12 16 16 C 1.54888 * 102.75073 * 37.94337 * 15 14 13 17 17 C 1.53875 * 110.03049 * 299.67962 * 13 12 11 18 18 C 1.47019 * 108.70520 * 24.36018 * 5 4 2 19 19 C 1.54340 * 107.26418 * 358.58422 * 18 5 4 20 20 H 1.09003 * 110.84981 * 219.67395 * 19 18 5 21 21 N 1.46496 * 110.51550 * 96.45268 * 19 18 5 22 22 C 1.36937 * 119.99734 * 91.50139 * 21 19 18 23 23 H 1.07991 * 120.00328 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99514 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47066 * 90.00058 * 26 24 22 28 28 H 1.48495 * 109.47146 * 209.99940 * 26 24 22 29 29 H 1.48502 * 109.46985 * 330.00181 * 26 24 22 30 30 H 1.09003 * 109.46638 * 182.44986 * 1 2 3 31 31 H 1.08995 * 109.46933 * 302.44665 * 1 2 3 32 32 H 1.08995 * 109.46732 * 62.45265 * 1 2 3 33 33 H 1.09005 * 110.36326 * 86.08068 * 4 2 1 34 34 H 1.08993 * 110.45871 * 323.80528 * 4 2 1 35 35 H 1.07994 * 126.83138 * 359.97438 * 9 8 6 36 36 H 1.08998 * 110.01318 * 178.29043 * 13 12 11 37 37 H 1.09006 * 110.48519 * 335.78572 * 14 13 12 38 38 H 1.09000 * 110.48630 * 98.42578 * 14 13 12 39 39 H 1.08999 * 110.75882 * 279.62397 * 15 14 13 40 40 H 1.09003 * 110.91540 * 156.33192 * 15 14 13 41 41 H 1.08999 * 110.48752 * 203.37536 * 16 15 14 42 42 H 1.09008 * 110.60117 * 80.79146 * 16 15 14 43 43 H 1.08996 * 110.03486 * 238.57204 * 17 13 12 44 44 H 1.09003 * 110.03517 * 0.02562 * 17 13 12 45 45 H 1.08995 * 109.88434 * 118.12440 * 18 5 4 46 46 H 1.08996 * 109.88221 * 239.29536 * 18 5 4 47 47 H 0.96999 * 119.99833 * 271.49553 * 21 19 18 48 48 H 0.97005 * 120.00333 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4478 -1.5617 -1.5939 7 8 4.3006 -1.4999 -2.7994 8 6 5.7422 -1.9850 -1.0301 9 6 6.0998 -2.1154 0.2896 10 8 7.3706 -2.5241 0.2957 11 7 7.8309 -2.6596 -0.8114 12 6 6.9699 -2.3718 -1.7422 13 6 7.1825 -2.4289 -3.2330 14 6 7.6267 -3.8463 -3.6496 15 6 8.6566 -3.6044 -4.7808 16 6 9.4138 -2.3455 -4.2903 17 6 8.3187 -1.4746 -3.6404 18 6 3.4658 -1.2794 0.6960 19 6 2.0861 -0.8079 1.2023 20 1 2.1921 -0.1699 2.0797 21 7 1.2269 -1.9574 1.4963 22 6 1.2058 -2.4918 2.7569 23 1 1.8230 -2.0662 3.5342 24 6 0.3912 -3.5807 3.0356 25 7 -0.3606 -4.0997 2.0881 26 14 0.3630 -4.3102 4.7550 27 1 -0.6850 -3.6351 5.5620 28 1 0.0647 -5.7625 4.6717 29 1 1.6868 -4.1128 5.3982 30 1 -0.3633 -1.0268 0.0439 31 1 -0.3633 0.5513 0.8672 32 1 -0.3632 0.4753 -0.9111 33 1 2.1561 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4042 35 1 5.4771 -1.9245 1.1510 36 1 6.2630 -2.1575 -3.7516 37 1 8.0952 -4.3612 -2.8108 38 1 6.7771 -4.4180 -4.0230 39 1 8.1523 -3.4078 -5.7269 40 1 9.3362 -4.4514 -4.8759 41 1 9.8685 -1.8219 -5.1313 42 1 10.1722 -2.6160 -3.5555 43 1 7.9509 -0.7406 -4.3573 44 1 8.7168 -0.9705 -2.7597 45 1 3.6601 -2.2964 1.0368 46 1 4.2424 -0.6085 1.0631 47 1 0.6728 -2.3399 0.7980 48 1 -0.9301 -4.8604 2.2829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054720861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:08 Heat of formation + Delta-G solvation = 33.006433 kcal Electronic energy + Delta-G solvation = -29412.058021 eV Core-core repulsion = 25470.180126 eV Total energy + Delta-G solvation = -3941.877895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.88738 -39.87829 -38.42628 -37.57034 -34.14078 -33.71652 -32.79435 -31.62149 -30.55267 -28.85876 -28.84914 -27.95437 -26.57757 -24.45017 -23.73588 -22.62259 -21.97991 -20.81736 -19.96674 -19.59805 -19.32448 -17.70302 -17.62216 -17.20583 -16.61907 -15.94669 -15.85430 -15.50750 -15.01269 -14.71516 -14.34938 -13.91082 -13.79315 -13.60411 -13.50169 -13.08555 -13.00809 -12.72462 -12.24048 -12.02728 -11.99397 -11.81818 -11.68207 -11.32304 -11.25476 -11.20699 -11.15711 -11.00268 -10.83586 -10.80325 -10.70390 -10.54156 -10.34047 -10.06627 -9.85485 -9.85136 -9.75097 -9.67752 -9.11056 -8.41916 -7.17525 -5.92575 -3.23671 1.11763 1.79038 2.82793 3.30425 3.34228 3.34860 3.39733 3.42006 3.94844 4.21111 4.44908 4.49495 4.52585 4.67954 4.79144 4.94698 5.02384 5.05846 5.25394 5.28386 5.29696 5.37281 5.37775 5.45618 5.51215 5.53277 5.60533 5.64223 5.68111 5.74178 5.77711 5.84707 5.87718 6.00093 6.05354 6.05831 6.11625 6.16185 6.23329 6.25168 6.30344 6.40344 6.49648 6.61119 6.88001 7.54979 7.68348 8.18999 8.24484 8.28569 9.36946 9.90184 10.24661 11.29109 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003066 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.902078 B = 9128.824870 C =10048.154684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.606 3.394 7 O -0.543 6.543 8 C -0.246 4.246 9 C -0.011 4.011 10 O 0.092 5.908 11 N -0.358 5.358 12 C 0.079 3.921 13 C -0.021 4.021 14 C -0.116 4.116 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.113 4.113 18 C 0.056 3.944 19 C 0.174 3.826 20 H 0.076 0.924 21 N -0.710 5.710 22 C -0.252 4.252 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.927 5.927 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.234 0.766 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 6.939 -8.609 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.331 5.331 6 C 0.395 3.605 7 O -0.423 6.423 8 C -0.253 4.253 9 C -0.093 4.093 10 O 0.033 5.967 11 N -0.065 5.065 12 C -0.084 4.084 13 C -0.041 4.041 14 C -0.154 4.154 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.070 4.070 19 C 0.061 3.939 20 H 0.094 0.906 21 N -0.351 5.351 22 C -0.383 4.383 23 H 0.091 0.909 24 C -0.203 4.203 25 N -0.574 5.574 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.223 0.777 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.925 6.465 -9.052 18.614 hybrid contribution -1.079 -0.419 0.833 1.426 sum 13.846 6.046 -8.219 17.200 Atomic orbital electron populations 1.21565 0.93178 1.03620 1.00650 1.22660 0.97160 0.98475 0.95226 0.90260 1.22299 0.82085 0.98562 0.97521 1.48212 1.11968 1.65256 1.07622 1.16422 0.81322 0.77386 0.85364 1.90730 1.82841 1.54885 1.13810 1.22289 0.97103 1.13030 0.92913 1.27229 0.86044 0.96057 0.99936 1.84580 1.24121 1.62811 1.25152 1.73586 1.22402 1.20239 0.90302 1.24711 0.87882 0.98159 0.97692 1.20465 1.01320 0.96607 0.85679 1.22444 0.99012 0.95241 0.98672 1.22479 0.97558 0.97800 0.98177 1.22356 0.97610 0.96131 0.99916 1.22179 0.94740 0.97588 1.00612 1.23663 1.02401 1.01949 0.78974 1.21190 0.87868 0.89957 0.94902 0.90574 1.42466 1.48813 1.32894 1.10908 1.19216 1.21144 1.10191 0.87707 0.90892 1.24766 0.99146 0.98698 0.97688 1.69650 1.29797 1.26127 1.31806 0.86207 0.77711 0.78387 0.83917 1.21600 1.21765 1.20629 0.90765 0.92245 0.93626 0.90958 0.90935 0.75036 0.86789 0.91192 0.91061 0.91221 0.91418 0.91605 0.91534 0.91085 0.91769 0.89997 0.92320 0.77672 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.98 37.16 0.33 -1.61 16 2 C -0.12 -1.65 3.52 -88.47 -0.31 -1.96 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.81 6.33 -2.53 -0.02 1.80 16 5 N -0.60 -9.51 3.33 -171.79 -0.57 -10.08 16 6 C 0.61 10.25 7.85 -12.53 -0.10 10.15 16 7 O -0.54 -10.34 15.53 5.27 0.08 -10.26 16 8 C -0.25 -3.71 6.41 -102.90 -0.66 -4.37 16 9 C -0.01 -0.14 10.83 30.41 0.33 0.19 16 10 O 0.09 1.24 11.06 18.65 0.21 1.45 16 11 N -0.36 -5.18 11.82 34.78 0.41 -4.77 16 12 C 0.08 1.15 5.80 -79.76 -0.46 0.68 16 13 C -0.02 -0.28 3.37 -90.65 -0.31 -0.58 16 14 C -0.12 -1.33 6.35 -25.08 -0.16 -1.49 16 15 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 16 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 17 C -0.11 -1.25 6.45 -25.61 -0.17 -1.41 16 18 C 0.06 0.84 4.78 -3.06 -0.01 0.82 16 19 C 0.17 2.87 3.40 -66.09 -0.22 2.65 16 20 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 21 N -0.71 -15.35 4.45 -51.64 -0.23 -15.58 16 22 C -0.25 -6.19 9.96 -15.06 -0.15 -6.34 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 26 Si 0.91 20.90 29.55 -169.99 -5.02 15.87 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.07 1.31 6.27 -51.93 -0.33 0.98 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 35 H 0.23 2.41 4.83 -52.49 -0.25 2.16 16 36 H 0.11 1.66 6.34 -51.93 -0.33 1.33 16 37 H 0.07 0.87 7.69 -51.93 -0.40 0.47 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 45 H 0.08 1.35 7.03 -51.93 -0.37 0.98 16 46 H 0.06 0.70 6.92 -51.93 -0.36 0.34 16 47 H 0.39 9.16 6.25 -40.82 -0.25 8.90 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -29.38 379.94 -8.31 -37.68 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.29 Total: 9.70 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.34 Total: -4.35 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.33 Total: -55.82 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.29 Total: -8.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.38 -8.31 -37.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054720861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.691 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds