Wall clock time and date at job start Tue Mar 31 2020 17:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.91625 * 2 1 4 4 C 1.54911 * 111.00572 * 236.09285 * 2 1 3 5 5 N 1.47425 * 104.83222 * 204.91618 * 4 2 1 6 6 C 1.34781 * 125.64620 * 204.09317 * 5 4 2 7 7 O 1.21603 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.47395 * 119.99634 * 180.02562 * 6 5 4 9 9 C 1.37355 * 128.56690 * 359.97438 * 8 6 5 10 10 O 1.33493 * 106.34070 * 180.02562 * 9 8 6 11 11 N 1.20659 * 113.16192 * 359.97438 * 10 9 8 12 12 C 1.30020 * 112.29561 * 0.02562 * 11 10 9 13 13 C 1.50702 * 127.33295 * 180.26037 * 12 11 10 14 14 C 1.54264 * 110.03449 * 56.84747 * 13 12 11 15 15 C 1.54880 * 104.19660 * 217.10603 * 14 13 12 16 16 C 1.54888 * 102.75073 * 37.94337 * 15 14 13 17 17 C 1.53875 * 110.03049 * 299.67962 * 13 12 11 18 18 C 1.47019 * 108.70520 * 24.36018 * 5 4 2 19 19 C 1.54340 * 107.26418 * 358.58422 * 18 5 4 20 20 H 1.09003 * 110.84981 * 219.67395 * 19 18 5 21 21 N 1.46496 * 110.51550 * 96.45268 * 19 18 5 22 22 C 1.36937 * 119.99734 * 91.50139 * 21 19 18 23 23 H 1.07991 * 120.00328 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99514 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00308 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47066 * 90.00058 * 26 24 22 28 28 H 1.48495 * 109.47146 * 209.99940 * 26 24 22 29 29 H 1.48502 * 109.46985 * 330.00181 * 26 24 22 30 30 H 1.09003 * 109.46638 * 182.44986 * 1 2 3 31 31 H 1.08995 * 109.46933 * 302.44665 * 1 2 3 32 32 H 1.08995 * 109.46732 * 62.45265 * 1 2 3 33 33 H 1.09005 * 110.36326 * 86.08068 * 4 2 1 34 34 H 1.08993 * 110.45871 * 323.80528 * 4 2 1 35 35 H 1.07994 * 126.83138 * 359.97438 * 9 8 6 36 36 H 1.08998 * 110.01318 * 178.29043 * 13 12 11 37 37 H 1.09006 * 110.48519 * 335.78572 * 14 13 12 38 38 H 1.09000 * 110.48630 * 98.42578 * 14 13 12 39 39 H 1.08999 * 110.75882 * 279.62397 * 15 14 13 40 40 H 1.09003 * 110.91540 * 156.33192 * 15 14 13 41 41 H 1.08999 * 110.48752 * 203.37536 * 16 15 14 42 42 H 1.09008 * 110.60117 * 80.79146 * 16 15 14 43 43 H 1.08996 * 110.03486 * 238.57204 * 17 13 12 44 44 H 1.09003 * 110.03517 * 0.02562 * 17 13 12 45 45 H 1.08995 * 109.88434 * 118.12440 * 18 5 4 46 46 H 1.08996 * 109.88221 * 239.29536 * 18 5 4 47 47 H 0.96999 * 119.99833 * 271.49553 * 21 19 18 48 48 H 0.97005 * 120.00333 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4478 -1.5617 -1.5939 7 8 4.3006 -1.4999 -2.7994 8 6 5.7422 -1.9850 -1.0301 9 6 6.0998 -2.1154 0.2896 10 8 7.3706 -2.5241 0.2957 11 7 7.8309 -2.6596 -0.8114 12 6 6.9699 -2.3718 -1.7422 13 6 7.1825 -2.4289 -3.2330 14 6 7.6267 -3.8463 -3.6496 15 6 8.6566 -3.6044 -4.7808 16 6 9.4138 -2.3455 -4.2903 17 6 8.3187 -1.4746 -3.6404 18 6 3.4658 -1.2794 0.6960 19 6 2.0861 -0.8079 1.2023 20 1 2.1921 -0.1699 2.0797 21 7 1.2269 -1.9574 1.4963 22 6 1.2058 -2.4918 2.7569 23 1 1.8230 -2.0662 3.5342 24 6 0.3912 -3.5807 3.0356 25 7 -0.3606 -4.0997 2.0881 26 14 0.3630 -4.3102 4.7550 27 1 -0.6850 -3.6351 5.5620 28 1 0.0647 -5.7625 4.6717 29 1 1.6868 -4.1128 5.3982 30 1 -0.3633 -1.0268 0.0439 31 1 -0.3633 0.5513 0.8672 32 1 -0.3632 0.4753 -0.9111 33 1 2.1561 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4042 35 1 5.4771 -1.9245 1.1510 36 1 6.2630 -2.1575 -3.7516 37 1 8.0952 -4.3612 -2.8108 38 1 6.7771 -4.4180 -4.0230 39 1 8.1523 -3.4078 -5.7269 40 1 9.3362 -4.4514 -4.8759 41 1 9.8685 -1.8219 -5.1313 42 1 10.1722 -2.6160 -3.5555 43 1 7.9509 -0.7406 -4.3573 44 1 8.7168 -0.9705 -2.7597 45 1 3.6601 -2.2964 1.0368 46 1 4.2424 -0.6085 1.0631 47 1 0.6728 -2.3399 0.7980 48 1 -0.9301 -4.8604 2.2829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054720861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:07 Heat of formation + Delta-G solvation = 16.785822 kcal Electronic energy + Delta-G solvation = -29412.761400 eV Core-core repulsion = 25470.180126 eV Total energy + Delta-G solvation = -3942.581273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.00213 -41.17639 -39.39022 -38.85727 -35.75013 -34.85970 -34.12047 -32.90901 -32.10310 -29.79671 -29.70521 -29.41943 -27.80600 -25.94029 -25.24264 -23.73066 -23.19342 -21.61106 -21.12453 -20.77587 -20.51930 -19.40919 -18.73893 -18.41753 -17.84311 -17.28707 -16.77279 -16.73857 -16.41655 -16.00740 -15.78138 -15.38170 -15.05452 -14.71258 -14.49424 -14.34999 -14.22379 -14.12764 -13.52770 -13.33907 -13.03874 -12.95313 -12.86365 -12.83528 -12.78660 -12.30347 -12.21985 -12.09638 -12.08270 -12.00256 -11.95454 -11.74942 -11.54876 -11.43870 -11.39341 -11.12801 -10.93653 -10.92244 -10.80210 -9.72398 -8.99407 -7.89729 -5.17780 -0.00010 0.66962 1.52570 1.53432 1.60751 1.65382 2.05696 2.20823 2.60025 2.87432 3.15747 3.41255 3.43417 3.64424 3.66099 3.83585 3.86680 3.87028 3.92020 3.95258 4.10175 4.35975 4.40915 4.42650 4.49378 4.51621 4.56482 4.59988 4.65229 4.70241 4.74798 4.82579 4.86065 4.91307 4.95981 4.99567 5.01592 5.17046 5.18189 5.19817 5.24223 5.32206 5.34179 5.41524 5.59008 5.64041 6.31216 6.40607 6.96205 7.13165 7.39524 8.13588 8.35359 9.33408 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003066 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.902078 B = 9128.824870 C =10048.154684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.112 0.888 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.603 3.397 7 O -0.573 6.573 8 C -0.274 4.274 9 C 0.015 3.985 10 O 0.096 5.904 11 N -0.368 5.368 12 C 0.072 3.928 13 C -0.026 4.026 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.110 4.110 18 C 0.062 3.938 19 C 0.164 3.836 20 H 0.093 0.907 21 N -0.722 5.722 22 C -0.231 4.231 23 H 0.089 0.911 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.964 3.036 27 H -0.292 1.292 28 H -0.307 1.307 29 H -0.264 1.264 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.259 0.741 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.374 0.626 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.682 8.621 -8.022 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.130 0.870 4 C -0.006 4.006 5 N -0.330 5.330 6 C 0.393 3.607 7 O -0.454 6.454 8 C -0.282 4.282 9 C -0.067 4.067 10 O 0.038 5.962 11 N -0.075 5.075 12 C -0.090 4.090 13 C -0.045 4.045 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.063 4.063 19 C 0.054 3.946 20 H 0.111 0.889 21 N -0.361 5.361 22 C -0.363 4.363 23 H 0.106 0.894 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.219 1.219 28 H -0.235 1.235 29 H -0.189 1.189 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.274 0.726 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.208 0.792 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.962 8.198 -8.436 20.642 hybrid contribution -1.676 -0.858 0.629 1.985 sum 15.286 7.340 -7.808 18.668 Atomic orbital electron populations 1.21489 0.93568 1.01592 1.01853 1.22622 0.96701 0.99415 0.93218 0.87040 1.22290 0.81747 0.97969 0.98556 1.48264 1.11801 1.64898 1.08029 1.16653 0.81958 0.76953 0.85108 1.90710 1.83469 1.56215 1.15054 1.22239 0.96739 1.15117 0.94080 1.27576 0.85617 0.93767 0.99710 1.84574 1.24319 1.62527 1.24804 1.73585 1.22593 1.20820 0.90482 1.24992 0.87791 0.97789 0.98468 1.20521 1.01235 0.97948 0.84825 1.22440 0.99488 0.94244 0.99242 1.22482 0.97085 0.98364 0.97499 1.22348 0.96918 0.95847 1.00399 1.22172 0.94583 0.97554 1.00525 1.23552 1.02349 1.02096 0.78309 1.21487 0.87853 0.88752 0.96541 0.88892 1.42644 1.49612 1.34203 1.09685 1.19674 1.18972 1.08733 0.88930 0.89364 1.25463 1.00288 1.00271 1.00558 1.69810 1.31683 1.26953 1.33564 0.85278 0.78121 0.76542 0.80630 1.21901 1.23489 1.18870 0.94240 0.92129 0.91420 0.90167 0.93364 0.72586 0.88744 0.92178 0.91589 0.90355 0.90035 0.89624 0.91714 0.90423 0.92644 0.91414 0.88198 0.79219 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.98 71.98 0.65 -2.94 16 2 C -0.10 -2.63 3.52 -9.40 -0.03 -2.66 16 3 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.12 3.49 6.33 86.86 0.55 4.04 16 5 N -0.60 -18.20 3.33 -815.68 -2.71 -20.92 16 6 C 0.60 20.08 7.85 86.65 0.68 20.76 16 7 O -0.57 -22.04 15.53 -4.04 -0.06 -22.11 16 8 C -0.27 -8.01 6.41 -18.75 -0.12 -8.13 16 9 C 0.02 0.35 10.83 67.61 0.73 1.09 16 10 O 0.10 2.40 11.06 76.99 0.85 3.25 16 11 N -0.37 -10.26 11.82 -44.77 -0.53 -10.79 16 12 C 0.07 2.08 5.80 45.16 0.26 2.34 16 13 C -0.03 -0.67 3.37 -10.82 -0.04 -0.71 16 14 C -0.12 -2.65 6.35 31.67 0.20 -2.44 16 15 C -0.12 -1.98 6.91 31.88 0.22 -1.76 16 16 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 17 C -0.11 -2.33 6.45 31.32 0.20 -2.13 16 18 C 0.06 1.67 4.78 86.74 0.41 2.09 16 19 C 0.16 5.03 3.40 46.19 0.16 5.19 16 20 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 21 N -0.72 -30.75 4.45 -317.30 -1.41 -32.16 16 22 C -0.23 -11.11 9.96 84.03 0.84 -10.27 16 23 H 0.09 3.90 7.83 -2.92 -0.02 3.88 16 24 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 25 N -0.97 -56.18 13.06 21.65 0.28 -55.89 16 26 Si 0.96 43.10 29.55 68.60 2.03 45.12 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 30 H 0.04 1.40 6.27 -2.39 -0.01 1.39 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 2.28 8.04 -2.38 -0.02 2.26 16 34 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 35 H 0.26 4.45 4.83 -2.91 -0.01 4.44 16 36 H 0.09 2.82 6.34 -2.39 -0.02 2.81 16 37 H 0.06 1.47 7.69 -2.38 -0.02 1.46 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 45 H 0.07 2.07 7.03 -2.39 -0.02 2.06 16 46 H 0.10 1.93 6.92 -2.39 -0.02 1.92 16 47 H 0.37 18.03 6.25 -92.71 -0.58 17.45 16 48 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -65.00 379.94 4.24 -60.75 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.40 Total: 33.46 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.40 Total: -0.72 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -4.37 Total: -119.76 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.79 Total: -18.85 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.00 4.24 -60.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054720861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.538 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds